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The map label for this gene is polA [H]

Identifier: 86605802

GI number: 86605802

Start: 1142039

End: 1142671

Strand: Reverse

Name: polA [H]

Synonym: CYA_1113

Alternate gene names: 86605802

Gene position: 1142671-1142039 (Counterclockwise)

Preceding gene: 86605803

Following gene: 86605798

Centisome position: 38.96

GC content: 61.77

Gene sequence:

>633_bases
GTGGCCCTAGAGCCTTTCCAGATCTGCGACGAAGATCTCACCCCCGAAGTGGCAGAGGCGCTGGCCGGGGAAACCCTCTT
GGCTGTGGACACCGAAACAATGGGGCTGATCCCACAGCGGGACAGGCTCTGTGTGGTGCAAATAGCCAACGCTGCCGGCG
AGGTGGTGCTGCTGCGGCTGAGCCGCGGCGTGAAGCAGGCCCCCCATTTGGCGCGGCTGCTGACGGATCCCAACATCGAA
AAGATCTTCCATTACGCCCGTTTTGACCTGGCCATGCTGCGCTACCACTTGGGGATCCAGGCCTGGCCGGTCTTCTGCAC
CAAAATTGCCAGCAAGCTGGCCCGCACCTACACCAGCAAGCACAGCCTGAAGGACGTGGTGGGCGAGCTGTGCGGGGTGG
AGCTGAATAAAACTGCCCAGAGCTCCGACTGGGGAAACGTCCAGGCCCTCTCGCCGGAGCAGTTGGAGTACGCGGCCAAC
GATGTTCGTTACTTGATCCCGGTGCGCCACAAGTTGGCCCAAATGCTGCAGCGGGAAGAGCGCTGGGAGCTGGCACAGCG
CTGTTTTCAACACCTCCCCACCCTGGTGGAGCTGGATCTGCTGGGATATGGCAACGTCTTCGAGCACCAGTAG

Upstream 100 bases:

>100_bases
CGGCCAGCGGCGCTGGTTGAGATGTCAAAAACTTTTGTCTTCAGGCGAGGGAAGTATCTCAGCCGGGCGGCTGCTCTCGC
CAAGTTAGCGAGGGATCCCT

Downstream 100 bases:

>100_bases
CGAAGGCCCTCAGTTGGCCAAGTCGGGGAAGGTGGCCCGCACCGCCGGGTGGATGAGCTTGCCGCCGCAGAGGTTGAGCC
CCTTGGCCAGGGCCGGGTCC

Product: 3'-5' exonuclease family protein

Products: NA

Alternate protein names: POL I [H]

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MALEPFQICDEDLTPEVAEALAGETLLAVDTETMGLIPQRDRLCVVQIANAAGEVVLLRLSRGVKQAPHLARLLTDPNIE
KIFHYARFDLAMLRYHLGIQAWPVFCTKIASKLARTYTSKHSLKDVVGELCGVELNKTAQSSDWGNVQALSPEQLEYAAN
DVRYLIPVRHKLAQMLQREERWELAQRCFQHLPTLVELDLLGYGNVFEHQ

Sequences:

>Translated_210_residues
MALEPFQICDEDLTPEVAEALAGETLLAVDTETMGLIPQRDRLCVVQIANAAGEVVLLRLSRGVKQAPHLARLLTDPNIE
KIFHYARFDLAMLRYHLGIQAWPVFCTKIASKLARTYTSKHSLKDVVGELCGVELNKTAQSSDWGNVQALSPEQLEYAAN
DVRYLIPVRHKLAQMLQREERWELAQRCFQHLPTLVELDLLGYGNVFEHQ
>Mature_209_residues
ALEPFQICDEDLTPEVAEALAGETLLAVDTETMGLIPQRDRLCVVQIANAAGEVVLLRLSRGVKQAPHLARLLTDPNIEK
IFHYARFDLAMLRYHLGIQAWPVFCTKIASKLARTYTSKHSLKDVVGELCGVELNKTAQSSDWGNVQALSPEQLEYAAND
VRYLIPVRHKLAQMLQREERWELAQRCFQHLPTLVELDLLGYGNVFEHQ

Specific function: Cleaves Multimeric tRNA Precursor At The Spacer Region. [C]

COG id: COG0349

COG function: function code J; Ribonuclease D

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 3'-5' exonuclease domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002562
- InterPro:   IPR019760
- InterPro:   IPR001098
- InterPro:   IPR002298
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01612 3_5_exonuc; PF00476 DNA_pol_A [H]

EC number: =2.7.7.7 [H]

Molecular weight: Translated: 23749; Mature: 23617

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALEPFQICDEDLTPEVAEALAGETLLAVDTETMGLIPQRDRLCVVQIANAAGEVVLLRL
CCCCCHHHCCCCCCHHHHHHHCCCEEEEECCHHHCCCCCCCCEEEEEECCCCCCEEHHHH
SRGVKQAPHLARLLTDPNIEKIFHYARFDLAMLRYHLGIQAWPVFCTKIASKLARTYTSK
HHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
HSLKDVVGELCGVELNKTAQSSDWGNVQALSPEQLEYAANDVRYLIPVRHKLAQMLQREE
HHHHHHHHHHHCCCCCCCCCCCCCCCEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
RWELAQRCFQHLPTLVELDLLGYGNVFEHQ
HHHHHHHHHHHCCHHEEHHHCCCCCHHCCC
>Mature Secondary Structure 
ALEPFQICDEDLTPEVAEALAGETLLAVDTETMGLIPQRDRLCVVQIANAAGEVVLLRL
CCCCHHHCCCCCCHHHHHHHCCCEEEEECCHHHCCCCCCCCEEEEEECCCCCCEEHHHH
SRGVKQAPHLARLLTDPNIEKIFHYARFDLAMLRYHLGIQAWPVFCTKIASKLARTYTSK
HHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
HSLKDVVGELCGVELNKTAQSSDWGNVQALSPEQLEYAANDVRYLIPVRHKLAQMLQREE
HHHHHHHHHHHCCCCCCCCCCCCCCCEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
RWELAQRCFQHLPTLVELDLLGYGNVFEHQ
HHHHHHHHHHHCCHHEEHHHCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]