Definition Synechococcus sp. JA-3-3Ab, complete genome.
Accession NC_007775
Length 2,932,766

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The map label for this gene is 86605798

Identifier: 86605798

GI number: 86605798

Start: 1135414

End: 1137369

Strand: Reverse

Name: 86605798

Synonym: CYA_1109

Alternate gene names: NA

Gene position: 1137369-1135414 (Counterclockwise)

Preceding gene: 86605802

Following gene: 86605797

Centisome position: 38.78

GC content: 64.26

Gene sequence:

>1956_bases
ATGGCAAGGGTATACTCTAGGGGTAGCGTTAGATCTACAAAAAGAAGCCCGCGTCAGTCCGTATTTGGAGTTGGGGAAGA
GGGCAGGATCCTGCCTGTCAGGTTTGGTAGGATAGCCTCGACCCTCCTTCCTTCTCTGGCCCAGCCTGGTGTGGGGATGA
CTCCTATGATCTCTTCCTTATCGTTCATCCGTCTGCAGAAATCCGGCGAACACCAATTTACAGCAGTCCTGCCTGACTTG
CGGTTGCAGCGTCACGGCTCCGCGACGCTGACGCGACTGGCCACCTCTTTGCTGTTGAGCACCAGCTTACTGCTGGCGGC
AGGAAGGGATCCCAGTTGGGCGCAAACTTCCCTGGACACCGGCCTTTTGGAGAAGCAGGCCCTGCCCCAAGCGCCGCCGC
TGCCGGACGACCGCCCCGCCATTTTTGTGGATGCCGCCAATGGCAGCGATACCCAAGGGGATGGATCCCGCAACAACCCC
TTCAAGACCATCACCCATGCCATCAGCCGGGCGCCAGCCGGCAGCATCATCCAGCTTCTGCCGGGGGTGTACAGCGCAGA
AAGCGGCGAAGTCTTCCCCATCCGCCTCAAGGCCGGCCTTATCTTGCGCGGGGACGAGTCCACCTTGGGAGAGGGCTACC
TGATCGATGGCGGCGGCACCTACATGAGCCCGACCTTGGCCCGGCAAAACGTTGCCCTGCTGGCAGAGACCGGCTCAGAG
GTGCGGGGGGTTACCCTGCGCAACCAGGGTCGGCGCGGCTACGCCCTCTGGGTAGAATCGGCTTCCCCGCGCATTCTCAA
CAACAGCTTTGTGGGCAGCATCCACGACGGCATTTTCATCGCCGGCGCCTCCAACCCCTGGATAGAAGGCAACCGCTTCT
ACAAAAACGGGGCCAACGGCATCTCCGTCTTGGGCACCTCCCAGCCCACCATTGTCAACAACCTCTTCCAAGAGACCGGC
TTTGGCCTCACCATCGACCAGCGCTCGGCGCCGATTGTGCGCAACAACCGCATCCTGCAAAACCGCACCGGCATTGTGGT
CGGCGGCAGCGCCCGTCCCATCCTGCGCAACAATCTCATTGCCCGCAACCTGGAGACTGGCCTGACAGCTATCACCACCG
CCCAGCCAGATTTGGGCACGGCTTCGGATCCCGGCAACAACATCTTTGAGGGGAACGGCCAGTACGACATCCACAACGCC
ACCCGCGGCCTGCGCCTCAACGCCAATGGCAACCAACTGGCCGGCAAAACCAAAGGGGAGCTGGATCTGGCCGGCCAGAC
CACGGTGGCTGCGCTGCCCAGCAACGCCCCGCCACCCATTGCGGCAGGCGGCTTGACGCTGCCCACACCTCCGCAGGCCG
AGCCTCCGGCTCCCAGCAGGGATCCCCAGCCGGCGGCGGCCTCTCCCACCTTGCCGGTGGTGACGGTGCCCCAATCGACT
GCCCCCGTTCCCCCTCCTGCAGCGGGATCGGGAGGGCGCATTTTGCCCAGTGCCCCCCCTCAGCCGGCAGGCGCTCAACC
CCAGGAGTTTGTTGCCGTCCCCTTCACCCCCGATGGCTCCACCACGCCTGCCCAACCGGTTGAGCCTGCTCCTGCCACTC
CCGTCCGCCAGCAATCTGTGGCTCCTCTCACGGATATTACTACCCTCCTGCCACCCCCGGCTCGCCGACAAGCGGGCAGC
AGCCCAACAACCCCCCCTGTTCCCGTTGCCGCGGCTCCAGAACCGGCGGTAGCCCCAGCAGAGTCGGCCACCCGCTTTCG
TGTGCTGGTGACCCCCAAGGGCAGCGACGATTTGCAGCGGCTGCGGCAGCTCGTCCCCGAAGCGGTGGAGACCGTGTTCA
ACGGCAGGAGGGTGCTGCAGGCCGGCCTCTACGACAGCCGCAGCCAGGCCCAGTCAGTCTTGGATCGGCTGTTGGACGCC
GGCTTTGACGCGGTGGCGGAGATGATCTTCCGTTGA

Upstream 100 bases:

>100_bases
GATCCCCAACAACAGCAGGTTGAGCAGGGGGCGCCCAGACGAGAGGGAAGCCAGCGGCAACTCTTGGGAGGAGCCTTCGC
GGGCAAGGGCTTCGTCGGTC

Downstream 100 bases:

>100_bases
CCTCACTGCCCAGGGATCCCCCCCGGCAGGATAGGAACTCCCCAGCAGGGAATGTATGATGCCTAGCACGGCTTTTTCCA
GAGCAATGGGGAGGAAAGCC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 651; Mature: 650

Protein sequence:

>651_residues
MARVYSRGSVRSTKRSPRQSVFGVGEEGRILPVRFGRIASTLLPSLAQPGVGMTPMISSLSFIRLQKSGEHQFTAVLPDL
RLQRHGSATLTRLATSLLLSTSLLLAAGRDPSWAQTSLDTGLLEKQALPQAPPLPDDRPAIFVDAANGSDTQGDGSRNNP
FKTITHAISRAPAGSIIQLLPGVYSAESGEVFPIRLKAGLILRGDESTLGEGYLIDGGGTYMSPTLARQNVALLAETGSE
VRGVTLRNQGRRGYALWVESASPRILNNSFVGSIHDGIFIAGASNPWIEGNRFYKNGANGISVLGTSQPTIVNNLFQETG
FGLTIDQRSAPIVRNNRILQNRTGIVVGGSARPILRNNLIARNLETGLTAITTAQPDLGTASDPGNNIFEGNGQYDIHNA
TRGLRLNANGNQLAGKTKGELDLAGQTTVAALPSNAPPPIAAGGLTLPTPPQAEPPAPSRDPQPAAASPTLPVVTVPQST
APVPPPAAGSGGRILPSAPPQPAGAQPQEFVAVPFTPDGSTTPAQPVEPAPATPVRQQSVAPLTDITTLLPPPARRQAGS
SPTTPPVPVAAAPEPAVAPAESATRFRVLVTPKGSDDLQRLRQLVPEAVETVFNGRRVLQAGLYDSRSQAQSVLDRLLDA
GFDAVAEMIFR

Sequences:

>Translated_651_residues
MARVYSRGSVRSTKRSPRQSVFGVGEEGRILPVRFGRIASTLLPSLAQPGVGMTPMISSLSFIRLQKSGEHQFTAVLPDL
RLQRHGSATLTRLATSLLLSTSLLLAAGRDPSWAQTSLDTGLLEKQALPQAPPLPDDRPAIFVDAANGSDTQGDGSRNNP
FKTITHAISRAPAGSIIQLLPGVYSAESGEVFPIRLKAGLILRGDESTLGEGYLIDGGGTYMSPTLARQNVALLAETGSE
VRGVTLRNQGRRGYALWVESASPRILNNSFVGSIHDGIFIAGASNPWIEGNRFYKNGANGISVLGTSQPTIVNNLFQETG
FGLTIDQRSAPIVRNNRILQNRTGIVVGGSARPILRNNLIARNLETGLTAITTAQPDLGTASDPGNNIFEGNGQYDIHNA
TRGLRLNANGNQLAGKTKGELDLAGQTTVAALPSNAPPPIAAGGLTLPTPPQAEPPAPSRDPQPAAASPTLPVVTVPQST
APVPPPAAGSGGRILPSAPPQPAGAQPQEFVAVPFTPDGSTTPAQPVEPAPATPVRQQSVAPLTDITTLLPPPARRQAGS
SPTTPPVPVAAAPEPAVAPAESATRFRVLVTPKGSDDLQRLRQLVPEAVETVFNGRRVLQAGLYDSRSQAQSVLDRLLDA
GFDAVAEMIFR
>Mature_650_residues
ARVYSRGSVRSTKRSPRQSVFGVGEEGRILPVRFGRIASTLLPSLAQPGVGMTPMISSLSFIRLQKSGEHQFTAVLPDLR
LQRHGSATLTRLATSLLLSTSLLLAAGRDPSWAQTSLDTGLLEKQALPQAPPLPDDRPAIFVDAANGSDTQGDGSRNNPF
KTITHAISRAPAGSIIQLLPGVYSAESGEVFPIRLKAGLILRGDESTLGEGYLIDGGGTYMSPTLARQNVALLAETGSEV
RGVTLRNQGRRGYALWVESASPRILNNSFVGSIHDGIFIAGASNPWIEGNRFYKNGANGISVLGTSQPTIVNNLFQETGF
GLTIDQRSAPIVRNNRILQNRTGIVVGGSARPILRNNLIARNLETGLTAITTAQPDLGTASDPGNNIFEGNGQYDIHNAT
RGLRLNANGNQLAGKTKGELDLAGQTTVAALPSNAPPPIAAGGLTLPTPPQAEPPAPSRDPQPAAASPTLPVVTVPQSTA
PVPPPAAGSGGRILPSAPPQPAGAQPQEFVAVPFTPDGSTTPAQPVEPAPATPVRQQSVAPLTDITTLLPPPARRQAGSS
PTTPPVPVAAAPEPAVAPAESATRFRVLVTPKGSDDLQRLRQLVPEAVETVFNGRRVLQAGLYDSRSQAQSVLDRLLDAG
FDAVAEMIFR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 68206; Mature: 68075

Theoretical pI: Translated: 10.26; Mature: 10.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVYSRGSVRSTKRSPRQSVFGVGEEGRILPVRFGRIASTLLPSLAQPGVGMTPMISSL
CCCCCCCCCCCHHHCCCHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCHHHHHC
SFIRLQKSGEHQFTAVLPDLRLQRHGSATLTRLATSLLLSTSLLLAAGRDPSWAQTSLDT
EEEEEECCCCCEEEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHH
GLLEKQALPQAPPLPDDRPAIFVDAANGSDTQGDGSRNNPFKTITHAISRAPAGSIIQLL
HHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHH
PGVYSAESGEVFPIRLKAGLILRGDESTLGEGYLIDGGGTYMSPTLARQNVALLAETGSE
CCCCCCCCCCEEEEEEECCEEEECCCCCCCCCEEECCCCCCCCCHHHHCCEEEEEECCCC
VRGVTLRNQGRRGYALWVESASPRILNNSFVGSIHDGIFIAGASNPWIEGNRFYKNGANG
EEEEEEECCCCCEEEEEEECCCCCEECCCCCEECCCCEEEEECCCCCCCCCCEEECCCCC
ISVLGTSQPTIVNNLFQETGFGLTIDQRSAPIVRNNRILQNRTGIVVGGSARPILRNNLI
EEEEECCCCHHHHHHHHHCCCCEEECCCCCCEEECCEEEECCCCEEECCCCCCHHHHCHH
ARNLETGLTAITTAQPDLGTASDPGNNIFEGNGQYDIHNATRGLRLNANGNQLAGKTKGE
HHHHHCCCEEEEECCCCCCCCCCCCCCEECCCCCEEEECCCCCEEECCCCCCCCCCCCCC
LDLAGQTTVAALPSNAPPPIAAGGLTLPTPPQAEPPAPSRDPQPAAASPTLPVVTVPQST
EEECCCEEEEECCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
APVPPPAAGSGGRILPSAPPQPAGAQPQEFVAVPFTPDGSTTPAQPVEPAPATPVRQQSV
CCCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
APLTDITTLLPPPARRQAGSSPTTPPVPVAAAPEPAVAPAESATRFRVLVTPKGSDDLQR
CCHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHH
LRQLVPEAVETVFNGRRVLQAGLYDSRSQAQSVLDRLLDAGFDAVAEMIFR
HHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHCC
>Mature Secondary Structure 
ARVYSRGSVRSTKRSPRQSVFGVGEEGRILPVRFGRIASTLLPSLAQPGVGMTPMISSL
CCCCCCCCCCHHHCCCHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCHHHHHC
SFIRLQKSGEHQFTAVLPDLRLQRHGSATLTRLATSLLLSTSLLLAAGRDPSWAQTSLDT
EEEEEECCCCCEEEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHH
GLLEKQALPQAPPLPDDRPAIFVDAANGSDTQGDGSRNNPFKTITHAISRAPAGSIIQLL
HHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHH
PGVYSAESGEVFPIRLKAGLILRGDESTLGEGYLIDGGGTYMSPTLARQNVALLAETGSE
CCCCCCCCCCEEEEEEECCEEEECCCCCCCCCEEECCCCCCCCCHHHHCCEEEEEECCCC
VRGVTLRNQGRRGYALWVESASPRILNNSFVGSIHDGIFIAGASNPWIEGNRFYKNGANG
EEEEEEECCCCCEEEEEEECCCCCEECCCCCEECCCCEEEEECCCCCCCCCCEEECCCCC
ISVLGTSQPTIVNNLFQETGFGLTIDQRSAPIVRNNRILQNRTGIVVGGSARPILRNNLI
EEEEECCCCHHHHHHHHHCCCCEEECCCCCCEEECCEEEECCCCEEECCCCCCHHHHCHH
ARNLETGLTAITTAQPDLGTASDPGNNIFEGNGQYDIHNATRGLRLNANGNQLAGKTKGE
HHHHHCCCEEEEECCCCCCCCCCCCCCEECCCCCEEEECCCCCEEECCCCCCCCCCCCCC
LDLAGQTTVAALPSNAPPPIAAGGLTLPTPPQAEPPAPSRDPQPAAASPTLPVVTVPQST
EEECCCEEEEECCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
APVPPPAAGSGGRILPSAPPQPAGAQPQEFVAVPFTPDGSTTPAQPVEPAPATPVRQQSV
CCCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
APLTDITTLLPPPARRQAGSSPTTPPVPVAAAPEPAVAPAESATRFRVLVTPKGSDDLQR
CCHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHH
LRQLVPEAVETVFNGRRVLQAGLYDSRSQAQSVLDRLLDAGFDAVAEMIFR
HHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA