| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86605712
Identifier: 86605712
GI number: 86605712
Start: 1032528
End: 1033253
Strand: Reverse
Name: 86605712
Synonym: CYA_1013
Alternate gene names: NA
Gene position: 1033253-1032528 (Counterclockwise)
Preceding gene: 86605713
Following gene: 86605709
Centisome position: 35.23
GC content: 57.3
Gene sequence:
>726_bases ATGACCAACCCCAATCCGATTATTGAGGTGCCGGATCCGATTTATCTAACCGAATGGCCCCCTACCCAAGACGAGCTCCC CTACGACGACGGCGTACCTATGGAAAGCTGGCGACATAAATGCCAGATGGACTTGCTCATCTCCGTCACCCAAACCTGGC TGCAGCAGCGCCCCGATGGCTTTGTCAGCGGCAACATGTTCCTCTACTACAGCTTGGAGCAGGCCCGCAGCCGCAATTTC CCAGGGCCCGACTATTTCGTGGTGCTGGGAGTGCCCAAGGGGGAGCGCAAAAGCTGGGTGATTTGGGAGCGGGGCAAAGG GCCAGACGTGGTGATTGAGCTTCTTTCTCCCAGCACTGCCCAGGATGACAAGACAAGCAAAAAGCAGCTTTACGAGCAAA TCATCCGGGTGCCGGAGTACTTTTGGTTTAGCCCGTTTGAGCCAGAAGACTGGGCAGGGTTTCGGCTGAGGGGCGACCAC TATGAGCCAATTGAATTCGATGCAGAAGGTCGCCTGCCGAGCGAGGTTTTGGGACTGTACCTGGTGAAATGGAAGGGCAG GTTTCGGGACATCGAGACCACATGGATTCGGTGGGCCACTTCTTCTGGTGAACTAGTGCCCACCGAGGCTGAGCTGGAGC GGCAAAGGGCTGAGCAGGAACGGCAACGCGCCGAGCGCCTGGCCCAAAAGCTACGAGAACTAGGGGTGGATCCCGATGCC CTTTAA
Upstream 100 bases:
>100_bases GCTGAGCAGGAACGGCAACGCGCCGAGTGCCTGGCCCAAAAGCTACGAGAACTAGGGGTGGATCCCGATACCTTGTGAAG AAAAGAGAGGAGAACAGGCA
Downstream 100 bases:
>100_bases AAGTAGAGACCTTTCCCCCCAATTAGGTTGGGGATAAAGGGCAGGCAAAGGCAGAGAATGGGGCTCTCACTGGGCAATTA ACAAAACGGGCAGCTTCTGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 241; Mature: 240
Protein sequence:
>241_residues MTNPNPIIEVPDPIYLTEWPPTQDELPYDDGVPMESWRHKCQMDLLISVTQTWLQQRPDGFVSGNMFLYYSLEQARSRNF PGPDYFVVLGVPKGERKSWVIWERGKGPDVVIELLSPSTAQDDKTSKKQLYEQIIRVPEYFWFSPFEPEDWAGFRLRGDH YEPIEFDAEGRLPSEVLGLYLVKWKGRFRDIETTWIRWATSSGELVPTEAELERQRAEQERQRAERLAQKLRELGVDPDA L
Sequences:
>Translated_241_residues MTNPNPIIEVPDPIYLTEWPPTQDELPYDDGVPMESWRHKCQMDLLISVTQTWLQQRPDGFVSGNMFLYYSLEQARSRNF PGPDYFVVLGVPKGERKSWVIWERGKGPDVVIELLSPSTAQDDKTSKKQLYEQIIRVPEYFWFSPFEPEDWAGFRLRGDH YEPIEFDAEGRLPSEVLGLYLVKWKGRFRDIETTWIRWATSSGELVPTEAELERQRAEQERQRAERLAQKLRELGVDPDA L >Mature_240_residues TNPNPIIEVPDPIYLTEWPPTQDELPYDDGVPMESWRHKCQMDLLISVTQTWLQQRPDGFVSGNMFLYYSLEQARSRNFP GPDYFVVLGVPKGERKSWVIWERGKGPDVVIELLSPSTAQDDKTSKKQLYEQIIRVPEYFWFSPFEPEDWAGFRLRGDHY EPIEFDAEGRLPSEVLGLYLVKWKGRFRDIETTWIRWATSSGELVPTEAELERQRAEQERQRAERLAQKLRELGVDPDAL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28235; Mature: 28104
Theoretical pI: Translated: 4.52; Mature: 4.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNPNPIIEVPDPIYLTEWPPTQDELPYDDGVPMESWRHKCQMDLLISVTQTWLQQRPDG CCCCCCEEECCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC FVSGNMFLYYSLEQARSRNFPGPDYFVVLGVPKGERKSWVIWERGKGPDVVIELLSPSTA EEECCEEEEEEEHHHHCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCEEEEECCCCCC QDDKTSKKQLYEQIIRVPEYFWFSPFEPEDWAGFRLRGDHYEPIEFDAEGRLPSEVLGLY CCCHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCEEEECCCCCCCEECCCCCCHHHHHHEE LVKWKGRFRDIETTWIRWATSSGELVPTEAELERQRAEQERQRAERLAQKLRELGVDPDA HEEECCCCCCCEEEEEEEECCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC L C >Mature Secondary Structure TNPNPIIEVPDPIYLTEWPPTQDELPYDDGVPMESWRHKCQMDLLISVTQTWLQQRPDG CCCCCEEECCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC FVSGNMFLYYSLEQARSRNFPGPDYFVVLGVPKGERKSWVIWERGKGPDVVIELLSPSTA EEECCEEEEEEEHHHHCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCEEEEECCCCCC QDDKTSKKQLYEQIIRVPEYFWFSPFEPEDWAGFRLRGDHYEPIEFDAEGRLPSEVLGLY CCCHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCEEEECCCCCCCEECCCCCCHHHHHHEE LVKWKGRFRDIETTWIRWATSSGELVPTEAELERQRAEQERQRAERLAQKLRELGVDPDA HEEECCCCCCCEEEEEEEECCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC L C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA