| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86605677
Identifier: 86605677
GI number: 86605677
Start: 990346
End: 992028
Strand: Reverse
Name: 86605677
Synonym: CYA_0977
Alternate gene names: NA
Gene position: 992028-990346 (Counterclockwise)
Preceding gene: 86605679
Following gene: 86605676
Centisome position: 33.83
GC content: 56.21
Gene sequence:
>1683_bases TTGCTGGCCGGCCTGTCGTCGGTGGTGCTCAACCCGGCAGCTTGGAGTTGCTTTAGCATCAGTGAAACCAGCCGCTTGCT GCGCCCCCTGCAAATTTGCCCCGACTTGACCGGAACTCCCGTTCTCTCCCCAGGCGCCACTGCTGAAGTTGTCTATAAGT TCCTGCTGAGCGACGGTCGGATTGGAACCATGAAGGGGCTGATCTCGATCGAAGACTTTCGCAGCAAGCGGCTGCATTCT ATTTACGAGGAACTGCGTATTGAAAAAATCATACCGGTTTTTAACGAAGCGGTTGTCGAGCAGATCATCGATCAGTTGAA GCCGATTTTTGCCCGCGACCTGGACGAGCTGCTTTGGCAAGAAAGTTTTTACTTCACCCCTCAAGATCTACGCCAGCCGG AGTTCTTGTTGCGCGGCCTGCGGCCCGAGGCGATCCCACGCCGCTTTCGGCCGCACCTGCAAAGGGTGTACTCCCACATC ATAGGGGTGTGTCGCAGCTTGCCCAACATCGCTTTCCAACTGTGTCTGCGGGCCTACCTGGAGTACAACGAGGTCAAAAA CAAGCATCTGTTGGCAATTCTGCTCAGCAAGTATTTTTACACGCTCTATCGCATCGGTGGACTGGACGGTTGGAAAAGTC GGGATCCGGTGGAAGTGGGATCCCTCTACTCTTCCAATCGACGGGCTCGGCTGCAGGCTCTTTCTCACCTGCTGACGCTG GACAACGACAGCGACGAACCGCTGGCAAGCCTTGGGGATCCAGGGCCGCGCGGCAGCTATTTCAGTGGAGAGGGGGAGCC TGCTGCTGGCGAGGTGCCGAGCGCAGAAGAGATCGAAAAGCTGCGGCAAGATGTGGAGGCAGCGCGCAGCCAGGCCGCCG AGGCCCAGCAGCTGGTAGCCCAATATCAAGAAGAGAAAAAACAAGAGCTGCTCAACCGCCTGCAGGATCCCAATAAGTTT CTCCTTTTCAGCCTCCATCAATTTTTCGACACTCTCCTCACATCCCTGCCGGTGGAGGTGAAAAGCGAGTACGGAGCCGT CTGGGTGCCCCGCACTTCCCACTTGGACGAAAAAGAGCGGGACAAGCTGACCGAACATTTGCACCAGATTACCAGCGAGG CCTATTTGCTGAGCATCCCCTTTGCCGAGGCGACGATCATTGGCTATTGGCGGGTTTTGGCCGATTCGTTCTACAACCAA TGGGTTTTGAATCAGTACAAGCAGTTGCAAAGCTACGGAGTGGATCTAGAGCAGCAGGGCATCCAAATCCTGGAGCGCGA ACGATTTTTAGATGAAGTGCAACTGCGCTTTGCTGGCCGCCACCGCGAGATCGTGACTCAAAATGTGGAGAAGATCAGCC AAATTGTGGTAGACAGCCTGGCCAAGCGGGTGGCCCTCAACACCAGCCAACAGAGCTTTCAAGCCATGCGAGCCAAATTG GCCACCGTTTTGGATATGGAGATCTCCCGCAAGGACATGGCGCAGGTACGGCGGCTGATCGACTACTTCACGGATGTGTT TTTGGGCAAGCGGGAGGAGCTGCGCTCGCCCTATCCGGTGGGCACCATCTTGCAAGTAAGGGCAGCCATCGAGCTGCGTC CCCCCGACAGTCGCACCCGCATTGGCCTGGAAATCCTAAACCAGATCTACCGCGAGTACATGCCTGTGCTGCAGCAAGAG TAG
Upstream 100 bases:
>100_bases ATCTCCTCCGTCCGTTCGGGATTCGCAGGCGGCTTCAGCCGCGGCACCCCGCCAAGCTCCCAGGGGAGAAATCCGGCTGG AGGATCTGGACGAGAAGCAA
Downstream 100 bases:
>100_bases GGGCAGGGATCCCAGGGGCTGGCAAGTTTTGGGCACAATGGGGACTGGTGTGCTGTTTAGGGTTGGAGACGGCAAGTTCC CATGCGCTACCGCCAGCTTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 560; Mature: 560
Protein sequence:
>560_residues MLAGLSSVVLNPAAWSCFSISETSRLLRPLQICPDLTGTPVLSPGATAEVVYKFLLSDGRIGTMKGLISIEDFRSKRLHS IYEELRIEKIIPVFNEAVVEQIIDQLKPIFARDLDELLWQESFYFTPQDLRQPEFLLRGLRPEAIPRRFRPHLQRVYSHI IGVCRSLPNIAFQLCLRAYLEYNEVKNKHLLAILLSKYFYTLYRIGGLDGWKSRDPVEVGSLYSSNRRARLQALSHLLTL DNDSDEPLASLGDPGPRGSYFSGEGEPAAGEVPSAEEIEKLRQDVEAARSQAAEAQQLVAQYQEEKKQELLNRLQDPNKF LLFSLHQFFDTLLTSLPVEVKSEYGAVWVPRTSHLDEKERDKLTEHLHQITSEAYLLSIPFAEATIIGYWRVLADSFYNQ WVLNQYKQLQSYGVDLEQQGIQILERERFLDEVQLRFAGRHREIVTQNVEKISQIVVDSLAKRVALNTSQQSFQAMRAKL ATVLDMEISRKDMAQVRRLIDYFTDVFLGKREELRSPYPVGTILQVRAAIELRPPDSRTRIGLEILNQIYREYMPVLQQE
Sequences:
>Translated_560_residues MLAGLSSVVLNPAAWSCFSISETSRLLRPLQICPDLTGTPVLSPGATAEVVYKFLLSDGRIGTMKGLISIEDFRSKRLHS IYEELRIEKIIPVFNEAVVEQIIDQLKPIFARDLDELLWQESFYFTPQDLRQPEFLLRGLRPEAIPRRFRPHLQRVYSHI IGVCRSLPNIAFQLCLRAYLEYNEVKNKHLLAILLSKYFYTLYRIGGLDGWKSRDPVEVGSLYSSNRRARLQALSHLLTL DNDSDEPLASLGDPGPRGSYFSGEGEPAAGEVPSAEEIEKLRQDVEAARSQAAEAQQLVAQYQEEKKQELLNRLQDPNKF LLFSLHQFFDTLLTSLPVEVKSEYGAVWVPRTSHLDEKERDKLTEHLHQITSEAYLLSIPFAEATIIGYWRVLADSFYNQ WVLNQYKQLQSYGVDLEQQGIQILERERFLDEVQLRFAGRHREIVTQNVEKISQIVVDSLAKRVALNTSQQSFQAMRAKL ATVLDMEISRKDMAQVRRLIDYFTDVFLGKREELRSPYPVGTILQVRAAIELRPPDSRTRIGLEILNQIYREYMPVLQQE >Mature_560_residues MLAGLSSVVLNPAAWSCFSISETSRLLRPLQICPDLTGTPVLSPGATAEVVYKFLLSDGRIGTMKGLISIEDFRSKRLHS IYEELRIEKIIPVFNEAVVEQIIDQLKPIFARDLDELLWQESFYFTPQDLRQPEFLLRGLRPEAIPRRFRPHLQRVYSHI IGVCRSLPNIAFQLCLRAYLEYNEVKNKHLLAILLSKYFYTLYRIGGLDGWKSRDPVEVGSLYSSNRRARLQALSHLLTL DNDSDEPLASLGDPGPRGSYFSGEGEPAAGEVPSAEEIEKLRQDVEAARSQAAEAQQLVAQYQEEKKQELLNRLQDPNKF LLFSLHQFFDTLLTSLPVEVKSEYGAVWVPRTSHLDEKERDKLTEHLHQITSEAYLLSIPFAEATIIGYWRVLADSFYNQ WVLNQYKQLQSYGVDLEQQGIQILERERFLDEVQLRFAGRHREIVTQNVEKISQIVVDSLAKRVALNTSQQSFQAMRAKL ATVLDMEISRKDMAQVRRLIDYFTDVFLGKREELRSPYPVGTILQVRAAIELRPPDSRTRIGLEILNQIYREYMPVLQQE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 64387; Mature: 64387
Theoretical pI: Translated: 6.22; Mature: 6.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLAGLSSVVLNPAAWSCFSISETSRLLRPLQICPDLTGTPVLSPGATAEVVYKFLLSDGR CCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCC IGTMKGLISIEDFRSKRLHSIYEELRIEKIIPVFNEAVVEQIIDQLKPIFARDLDELLWQ EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ESFYFTPQDLRQPEFLLRGLRPEAIPRRFRPHLQRVYSHIIGVCRSLPNIAFQLCLRAYL HCCCCCHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EYNEVKNKHLLAILLSKYFYTLYRIGGLDGWKSRDPVEVGSLYSSNRRARLQALSHLLTL HHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHC DNDSDEPLASLGDPGPRGSYFSGEGEPAAGEVPSAEEIEKLRQDVEAARSQAAEAQQLVA CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH QYQEEKKQELLNRLQDPNKFLLFSLHQFFDTLLTSLPVEVKSEYGAVWVPRTSHLDEKER HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCEEECCCCCCCCHHHH DKLTEHLHQITSEAYLLSIPFAEATIIGYWRVLADSFYNQWVLNQYKQLQSYGVDLEQQG HHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH IQILERERFLDEVQLRFAGRHREIVTQNVEKISQIVVDSLAKRVALNTSQQSFQAMRAKL HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH ATVLDMEISRKDMAQVRRLIDYFTDVFLGKREELRSPYPVGTILQVRAAIELRPPDSRTR HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHEECCCCCHHH IGLEILNQIYREYMPVLQQE HHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MLAGLSSVVLNPAAWSCFSISETSRLLRPLQICPDLTGTPVLSPGATAEVVYKFLLSDGR CCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCC IGTMKGLISIEDFRSKRLHSIYEELRIEKIIPVFNEAVVEQIIDQLKPIFARDLDELLWQ EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ESFYFTPQDLRQPEFLLRGLRPEAIPRRFRPHLQRVYSHIIGVCRSLPNIAFQLCLRAYL HCCCCCHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EYNEVKNKHLLAILLSKYFYTLYRIGGLDGWKSRDPVEVGSLYSSNRRARLQALSHLLTL HHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHC DNDSDEPLASLGDPGPRGSYFSGEGEPAAGEVPSAEEIEKLRQDVEAARSQAAEAQQLVA CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH QYQEEKKQELLNRLQDPNKFLLFSLHQFFDTLLTSLPVEVKSEYGAVWVPRTSHLDEKER HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCEEECCCCCCCCHHHH DKLTEHLHQITSEAYLLSIPFAEATIIGYWRVLADSFYNQWVLNQYKQLQSYGVDLEQQG HHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH IQILERERFLDEVQLRFAGRHREIVTQNVEKISQIVVDSLAKRVALNTSQQSFQAMRAKL HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH ATVLDMEISRKDMAQVRRLIDYFTDVFLGKREELRSPYPVGTILQVRAAIELRPPDSRTR HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHEECCCCCHHH IGLEILNQIYREYMPVLQQE HHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA