| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86605673
Identifier: 86605673
GI number: 86605673
Start: 985155
End: 986375
Strand: Reverse
Name: 86605673
Synonym: CYA_0973
Alternate gene names: NA
Gene position: 986375-985155 (Counterclockwise)
Preceding gene: 86605674
Following gene: 86605672
Centisome position: 33.63
GC content: 60.93
Gene sequence:
>1221_bases ATGGCCCTTTGGATCTACGTCGTGCCCCCCCTGGCCGGGCTGGTGATCGGCTATTTCACCAACGACATCGCCATCAAGAT GCTCTTCCGGCCCTACCGGGCCTATCGGATTTTCGGCTGGCGCATCCCCTTCACGCCCGGCCTGATCCCGCAGAACCAGC CCCGCCTGGCCAAGCAGATTGCCAAGACCATCATGGGATCCCTGCTCACGCCAGAGGAGCTGCACAATCTGGCCCGCAAG CTGCTGCGAACTGAGCGCATGCAGGCAGGGATCCGCTGGCTGCTGGGGGTGGCGCTGGATCGGCTGCAAAACCCCGAGCA ACAGCAGCAAACCGCTCAGGTGCTGGCGCGCATCTTGGCCGATCTGTTCAACGAGTCGTTGCCCCGCCTGGTGAAGGTGC TCGCCCGCCAGGAGACTTTTTTGGAGGGGCCGATTAACCAACTGTTCGACCAGGTGCTGCTAGAGCTGCGCCTCAACGCC GAGCAAGCCCGGCAGCTTTCGGAGTGGATCCTGAAGCAGGCGCTGCCCCCCAAGGTGTTGCGGCAGAACCTGGTGGATTT TCTCACCGATCGCAACATCGAAGCTTTGGATGAAGAATTTCGCGAGCGGGCCACCGGCTCCTACTGGCTGGTGGCCAACT TGTTTGGCCTCAAAAACGCCCTGCTGCGCCTGCGCACCTATTGCCTGGAGGAGCCGGAAGGGGCAGAGGCCATCTTGGAA GATCTGCTCAAAGACATCAACGCCCCCCGCCGCCTGACCGAGATCCTGCAGAACCTCTCCCTGCAAAACCTGCCGGTTTC CGCCGTACGTCAGTTGCGCCGTGCCCTGCGCGATGGGATCCAAGATTACCTGCGCAGCCAAGGGCCAGAGGTTATCAAGG GGCTGGGGGAGAGCATCGATTGGGAAAAAGTGGCCAGCCTGGTGTTGGGTCGCCTGCGCAACTCCAAGGCGCTGATCGCC TCCATCGATCAGATCAGCGCCGACCTGGCTTTGATCCTGGAGCGCTACCTAGAGCGGGATCTGGAATCGCTGATGATGCA GGTGATCCCCGTGTTGAACTTAGATCAGGTGATTGCCGACAAAGTCAACGCCACCTCCCCTGCTGAGCTGGAGCAGGCCA TTCAGCAAATTGTGCGCCAGGAACTGCAGGCCATCGTCAACTTGGGGGGGCTGTTGGGTTTTTTGGTGGGCTGCGTGCAG GTGCTGTTTTTGCTGAGGTGA
Upstream 100 bases:
>100_bases GGAACTGGAACTGAGCGAGAGCCTGATCATCCAATAGCCTTGACAAGAAGCGAGCAGGAGCGGGTCGGTAGAGTAGAGAA GATCCCCCCAAGTTTGCTCC
Downstream 100 bases:
>100_bases CGGCCCCCTTCCCCAGAAAACGGGAGCTTGGATTGCGGCTTTTGCTTCAGTTACGATATTGGAATGCGGTTAACAATTCT CCACACTTCCGATCTCCACG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 406; Mature: 405
Protein sequence:
>406_residues MALWIYVVPPLAGLVIGYFTNDIAIKMLFRPYRAYRIFGWRIPFTPGLIPQNQPRLAKQIAKTIMGSLLTPEELHNLARK LLRTERMQAGIRWLLGVALDRLQNPEQQQQTAQVLARILADLFNESLPRLVKVLARQETFLEGPINQLFDQVLLELRLNA EQARQLSEWILKQALPPKVLRQNLVDFLTDRNIEALDEEFRERATGSYWLVANLFGLKNALLRLRTYCLEEPEGAEAILE DLLKDINAPRRLTEILQNLSLQNLPVSAVRQLRRALRDGIQDYLRSQGPEVIKGLGESIDWEKVASLVLGRLRNSKALIA SIDQISADLALILERYLERDLESLMMQVIPVLNLDQVIADKVNATSPAELEQAIQQIVRQELQAIVNLGGLLGFLVGCVQ VLFLLR
Sequences:
>Translated_406_residues MALWIYVVPPLAGLVIGYFTNDIAIKMLFRPYRAYRIFGWRIPFTPGLIPQNQPRLAKQIAKTIMGSLLTPEELHNLARK LLRTERMQAGIRWLLGVALDRLQNPEQQQQTAQVLARILADLFNESLPRLVKVLARQETFLEGPINQLFDQVLLELRLNA EQARQLSEWILKQALPPKVLRQNLVDFLTDRNIEALDEEFRERATGSYWLVANLFGLKNALLRLRTYCLEEPEGAEAILE DLLKDINAPRRLTEILQNLSLQNLPVSAVRQLRRALRDGIQDYLRSQGPEVIKGLGESIDWEKVASLVLGRLRNSKALIA SIDQISADLALILERYLERDLESLMMQVIPVLNLDQVIADKVNATSPAELEQAIQQIVRQELQAIVNLGGLLGFLVGCVQ VLFLLR >Mature_405_residues ALWIYVVPPLAGLVIGYFTNDIAIKMLFRPYRAYRIFGWRIPFTPGLIPQNQPRLAKQIAKTIMGSLLTPEELHNLARKL LRTERMQAGIRWLLGVALDRLQNPEQQQQTAQVLARILADLFNESLPRLVKVLARQETFLEGPINQLFDQVLLELRLNAE QARQLSEWILKQALPPKVLRQNLVDFLTDRNIEALDEEFRERATGSYWLVANLFGLKNALLRLRTYCLEEPEGAEAILED LLKDINAPRRLTEILQNLSLQNLPVSAVRQLRRALRDGIQDYLRSQGPEVIKGLGESIDWEKVASLVLGRLRNSKALIAS IDQISADLALILERYLERDLESLMMQVIPVLNLDQVIADKVNATSPAELEQAIQQIVRQELQAIVNLGGLLGFLVGCVQV LFLLR
Specific function: Unknown
COG id: COG4399
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0754 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007383 - InterPro: IPR016991 [H]
Pfam domain/function: PF04286 DUF445 [H]
EC number: NA
Molecular weight: Translated: 46195; Mature: 46064
Theoretical pI: Translated: 8.16; Mature: 8.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALWIYVVPPLAGLVIGYFTNDIAIKMLFRPYRAYRIFGWRIPFTPGLIPQNQPRLAKQI CEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCHHHHHH AKTIMGSLLTPEELHNLARKLLRTERMQAGIRWLLGVALDRLQNPEQQQQTAQVLARILA HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH DLFNESLPRLVKVLARQETFLEGPINQLFDQVLLELRLNAEQARQLSEWILKQALPPKVL HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHH RQNLVDFLTDRNIEALDEEFRERATGSYWLVANLFGLKNALLRLRTYCLEEPEGAEAILE HHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH DLLKDINAPRRLTEILQNLSLQNLPVSAVRQLRRALRDGIQDYLRSQGPEVIKGLGESID HHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCC WEKVASLVLGRLRNSKALIASIDQISADLALILERYLERDLESLMMQVIPVLNLDQVIAD HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH KVNATSPAELEQAIQQIVRQELQAIVNLGGLLGFLVGCVQVLFLLR HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC >Mature Secondary Structure ALWIYVVPPLAGLVIGYFTNDIAIKMLFRPYRAYRIFGWRIPFTPGLIPQNQPRLAKQI EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCHHHHHH AKTIMGSLLTPEELHNLARKLLRTERMQAGIRWLLGVALDRLQNPEQQQQTAQVLARILA HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH DLFNESLPRLVKVLARQETFLEGPINQLFDQVLLELRLNAEQARQLSEWILKQALPPKVL HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHH RQNLVDFLTDRNIEALDEEFRERATGSYWLVANLFGLKNALLRLRTYCLEEPEGAEAILE HHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH DLLKDINAPRRLTEILQNLSLQNLPVSAVRQLRRALRDGIQDYLRSQGPEVIKGLGESID HHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCC WEKVASLVLGRLRNSKALIASIDQISADLALILERYLERDLESLMMQVIPVLNLDQVIAD HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH KVNATSPAELEQAIQQIVRQELQAIVNLGGLLGFLVGCVQVLFLLR HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA