| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86605640
Identifier: 86605640
GI number: 86605640
Start: 947476
End: 948816
Strand: Reverse
Name: 86605640
Synonym: CYA_0937
Alternate gene names: NA
Gene position: 948816-947476 (Counterclockwise)
Preceding gene: 86605646
Following gene: 86605637
Centisome position: 32.35
GC content: 64.8
Gene sequence:
>1341_bases ATGCCCGCTCTTGGACGGGCCCTCTCAGCATCCATCCAGTATCCCTGGCTCTGGCAAGCCTCGTCCAGGAGTGGCAGCGT GGATAGAGCAGAACAACAACGGCTACGCCAGGCTGCCTGGCTGATGGTGGGCAATGGCCTGCGCCTGGGGTTGTCCGGGG CCTATTTCATCCTGCTGGCGCGGCTGTTGGGGCCGGAAGCTTTTGGAGTGTTCTCCGCGATTTTGGCCTGCAGCAACCTA GCTGCCCCCTTTGGCTACTGGGGCCAATCGGAATTGCTGATCCAGCGCCTAAGCAACCGGAGATCTGCCGCGGCTGCCCC GGAGATCAGTCCCAGCCTGTGGCTGGCCGGACTGGGCTGCGGCGGGATGGCGCTGCTGTTGGCGCCCCTCCTGAGCCTCT GGCTGGCGGAGACTTCTCCCCTGCTGGTAGGGATCCTGCTGGCCAGCGACCTGCTGTTTATCGCCATTCCTGAGGTGTAC CGAGGGATCCTGATTGGGCAAGAGCAAGTTGCCGGCGTGGCCCTCATCGACACCGGCATGGCGCTGGGGCGATTGGGGGC TGTGCTGCTGGCGGTGGCCTTGGGCTGGGGATCCCTAACCCAATGGGCCATTCTCTACGGGCTGATGGTGCTGGCGGTGC TGCTGCTGATGGCGCGGGGGATGGGGCGGTGGAGCAAGCCTTCTCCCCCCCTGGCCTGGAGAGATCTGGGGGAACGGCTG GTGGCGGGCTGGGACTTTGCCGTGGGGCTGGCGGCGGCCAAAACCTTCACCGACCTGGACAAGCTGCTTTTGCCCCGCCT GGCCTCGGCAGCAGCGGGGGGGCTCTACAGCGCTGCCTACCGGGTGATCAACTTTTCGCAAACGCCGATGATCGCTCTGC TCACCAGCCACTTTGCCGAGCTGTGCCGCCAAGGACAGAAAAGCCTGCCGCAGGGCTGCCGCTACGCCTGGCACCTTTCC CCTTGGGTGGCGGGCTACGGCAGTTTGGCCGCCTTGGGGGTGGCATTGGGCTCTTACGGGATCCCTTGGGTGCTGGGGTC GGCTTACCAAGAGACGGCCCTCATCCTGCGCTGGCTTAGCCCGGTGATCTTGCTGGAGGGGATCCACCTGCTGCTGTCTC ACCTGCTCACCGGGTCAGGGTTGCAAAAGCCCCGCAGCCGCCTGCAACTGCTGGCTCTGGGGCTCAACGGGCTTTTGAAT GCGGTTTGGATCCCGAGGTGGGGTTGGCGAGGGGCGGCTTCGGCCACCTTGCTCTCAGAAGTGGCGCTGGTGCTGGCCTT GCTGCTGCTAATTCGACAGCAATTGCGCTTTCCAGAGGGAGGCCAACCCAGCTCGAACTAG
Upstream 100 bases:
>100_bases GCCAAGGTGTGGGGGCTTCGCGCGGCGTTGCTGACGGGGTAGAGTTTGGCCATGAACTTGCCAGAAGAATTGCAACCGAT ACACCCAAAATCAAGAGGAG
Downstream 100 bases:
>100_bases GAGGTCTTGACGATGTAGGTGGCCTTGGCGTCCGGACCAAAGCTGATGACATCCCCCGACTTAAGTTGGTGGGTAGAAAT TTTCTGGCCGTTGATCAGCA
Product: polysaccharide biosynthesis domain-containing protein
Products: NA
Alternate protein names: Polysaccharide Biosynthesis Domain-Containing Protein
Number of amino acids: Translated: 446; Mature: 445
Protein sequence:
>446_residues MPALGRALSASIQYPWLWQASSRSGSVDRAEQQRLRQAAWLMVGNGLRLGLSGAYFILLARLLGPEAFGVFSAILACSNL AAPFGYWGQSELLIQRLSNRRSAAAAPEISPSLWLAGLGCGGMALLLAPLLSLWLAETSPLLVGILLASDLLFIAIPEVY RGILIGQEQVAGVALIDTGMALGRLGAVLLAVALGWGSLTQWAILYGLMVLAVLLLMARGMGRWSKPSPPLAWRDLGERL VAGWDFAVGLAAAKTFTDLDKLLLPRLASAAAGGLYSAAYRVINFSQTPMIALLTSHFAELCRQGQKSLPQGCRYAWHLS PWVAGYGSLAALGVALGSYGIPWVLGSAYQETALILRWLSPVILLEGIHLLLSHLLTGSGLQKPRSRLQLLALGLNGLLN AVWIPRWGWRGAASATLLSEVALVLALLLLIRQQLRFPEGGQPSSN
Sequences:
>Translated_446_residues MPALGRALSASIQYPWLWQASSRSGSVDRAEQQRLRQAAWLMVGNGLRLGLSGAYFILLARLLGPEAFGVFSAILACSNL AAPFGYWGQSELLIQRLSNRRSAAAAPEISPSLWLAGLGCGGMALLLAPLLSLWLAETSPLLVGILLASDLLFIAIPEVY RGILIGQEQVAGVALIDTGMALGRLGAVLLAVALGWGSLTQWAILYGLMVLAVLLLMARGMGRWSKPSPPLAWRDLGERL VAGWDFAVGLAAAKTFTDLDKLLLPRLASAAAGGLYSAAYRVINFSQTPMIALLTSHFAELCRQGQKSLPQGCRYAWHLS PWVAGYGSLAALGVALGSYGIPWVLGSAYQETALILRWLSPVILLEGIHLLLSHLLTGSGLQKPRSRLQLLALGLNGLLN AVWIPRWGWRGAASATLLSEVALVLALLLLIRQQLRFPEGGQPSSN >Mature_445_residues PALGRALSASIQYPWLWQASSRSGSVDRAEQQRLRQAAWLMVGNGLRLGLSGAYFILLARLLGPEAFGVFSAILACSNLA APFGYWGQSELLIQRLSNRRSAAAAPEISPSLWLAGLGCGGMALLLAPLLSLWLAETSPLLVGILLASDLLFIAIPEVYR GILIGQEQVAGVALIDTGMALGRLGAVLLAVALGWGSLTQWAILYGLMVLAVLLLMARGMGRWSKPSPPLAWRDLGERLV AGWDFAVGLAAAKTFTDLDKLLLPRLASAAAGGLYSAAYRVINFSQTPMIALLTSHFAELCRQGQKSLPQGCRYAWHLSP WVAGYGSLAALGVALGSYGIPWVLGSAYQETALILRWLSPVILLEGIHLLLSHLLTGSGLQKPRSRLQLLALGLNGLLNA VWIPRWGWRGAASATLLSEVALVLALLLLIRQQLRFPEGGQPSSN
Specific function: Unknown
COG id: COG2244
COG function: function code R; Membrane protein involved in the export of O-antigen and teichoic acid
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47664; Mature: 47533
Theoretical pI: Translated: 10.18; Mature: 10.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPALGRALSASIQYPWLWQASSRSGSVDRAEQQRLRQAAWLMVGNGLRLGLSGAYFILLA CCCCCCHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHH RLLGPEAFGVFSAILACSNLAAPFGYWGQSELLIQRLSNRRSAAAAPEISPSLWLAGLGC HHHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHCCCCCCCHHHHHHCCCC GGMALLLAPLLSLWLAETSPLLVGILLASDLLFIAIPEVYRGILIGQEQVAGVALIDTGM CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHH ALGRLGAVLLAVALGWGSLTQWAILYGLMVLAVLLLMARGMGRWSKPSPPLAWRDLGERL HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH VAGWDFAVGLAAAKTFTDLDKLLLPRLASAAAGGLYSAAYRVINFSQTPMIALLTSHFAE HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHH LCRQGQKSLPQGCRYAWHLSPWVAGYGSLAALGVALGSYGIPWVLGSAYQETALILRWLS HHHHHHHCCHHHCCEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH PVILLEGIHLLLSHLLTGSGLQKPRSRLQLLALGLNGLLNAVWIPRWGWRGAASATLLSE HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH VALVLALLLLIRQQLRFPEGGQPSSN HHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure PALGRALSASIQYPWLWQASSRSGSVDRAEQQRLRQAAWLMVGNGLRLGLSGAYFILLA CCCCCHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHH RLLGPEAFGVFSAILACSNLAAPFGYWGQSELLIQRLSNRRSAAAAPEISPSLWLAGLGC HHHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHCCCCCCCHHHHHHCCCC GGMALLLAPLLSLWLAETSPLLVGILLASDLLFIAIPEVYRGILIGQEQVAGVALIDTGM CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHH ALGRLGAVLLAVALGWGSLTQWAILYGLMVLAVLLLMARGMGRWSKPSPPLAWRDLGERL HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH VAGWDFAVGLAAAKTFTDLDKLLLPRLASAAAGGLYSAAYRVINFSQTPMIALLTSHFAE HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHH LCRQGQKSLPQGCRYAWHLSPWVAGYGSLAALGVALGSYGIPWVLGSAYQETALILRWLS HHHHHHHCCHHHCCEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH PVILLEGIHLLLSHLLTGSGLQKPRSRLQLLALGLNGLLNAVWIPRWGWRGAASATLLSE HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH VALVLALLLLIRQQLRFPEGGQPSSN HHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA