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The map label for this gene is 86605552

Identifier: 86605552

GI number: 86605552

Start: 857455

End: 858429

Strand: Reverse

Name: 86605552

Synonym: CYA_0848

Alternate gene names: NA

Gene position: 858429-857455 (Counterclockwise)

Preceding gene: 86605553

Following gene: 86605551

Centisome position: 29.27

GC content: 60.62

Gene sequence:

>975_bases
GTGCTGCTAGCTGCCTTCTCTCTCTTGCTGATGGCGGCGCGGATGCCGGACATGAAGGTGGTGCCCTGGCAACAAGTCGA
GGTGCCCACCCAGAACATTCTGCTGGACATTGCTTTCACCGGCACCAACCCTTCTCATGGCTGGCTGGTGGGCGATAAAG
CGACGCTGTTGGAGTCTCAGGATGGCGGCCTCCACTGGCAGGTGCGCAAGCTGACGGCACTGGAGCCGGAAGCCTATCTG
AGCTCGATTAGCTTTGCCGGAGCAGAAGGCTGGGTGGTGGGGCAGCCGAGGATCCTCCTCCACACGCTCAACGAGGGATC
CGACTGGACATCCATTCGTCTCAGCAAGCAACTGCCGGGGGAGCCGATCCTAATCCAAGCCCTGGGTCCTGGAGCGGCTG
AGATGGTAACCAATGTGGGGGCCATCTACCGCACGGAAGATGGAGGACAGACCTGGCATGCCCAGGTGGAAGAGCCGATT
GGGGCGATTAAAAACATTGCCCGCGGCCCAGGAGGAGAGTATCTGGCCGTGTCGTCGCGGGGCAGCTTCTACTTTCTCTA
CACTCCAGAAAGCCGATCCTGGAAGCCGTATCCGCGGGAAAGCTCTCGCCGCATTCAGAACATGGGCTTTGGCCCCAACG
GCAGCGCCTGGAAATTGAACCAAGGCGCGGAGATCGCCTTCACGAGTGACTTCACCTCCGGCGAGTGGTCCAAGCCGTTG
CGACCCGGGCGTGCCCTCAGCTTTGGCTATCTAAATGCGGCCTACCAGAACGACCACGACCTCTGGGTGGTGGGCGGCGG
CGGCACTCTGATCCACAGCCCCGATGGCGGCAAGACCTGGGAGGAGGCCAAGAAATTGAGCAACATTCCCGCCAATTTCT
ACAGCATCGAGTTCTTTGGCCCCGACCGAGGATTTATCTTGGGGCAGCGGGGCACGCTTTTGCGCTACGTTGGCTACAGC
AATTCCCCGTCCTAG

Upstream 100 bases:

>100_bases
AAAACCTGCTCATCTTCTTGGGGTTGGCGCTGGGATTTTTGTTTTTGATGAGTTTCTATTTCGTCGAGTGATGGCCAAAA
TGCTTAAGCTCTGGAGACTG

Downstream 100 bases:

>100_bases
TCCTAGGGTGAATGGAGACAGGAGGGATCCCACCTCACCACCACGGCTGCTGGTGGCGGCCAGCGGGACGGGGGGGCATA
TCTTTCCGGCGCTGGCCGTT

Product: Ycf48-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MLLAAFSLLLMAARMPDMKVVPWQQVEVPTQNILLDIAFTGTNPSHGWLVGDKATLLESQDGGLHWQVRKLTALEPEAYL
SSISFAGAEGWVVGQPRILLHTLNEGSDWTSIRLSKQLPGEPILIQALGPGAAEMVTNVGAIYRTEDGGQTWHAQVEEPI
GAIKNIARGPGGEYLAVSSRGSFYFLYTPESRSWKPYPRESSRRIQNMGFGPNGSAWKLNQGAEIAFTSDFTSGEWSKPL
RPGRALSFGYLNAAYQNDHDLWVVGGGGTLIHSPDGGKTWEEAKKLSNIPANFYSIEFFGPDRGFILGQRGTLLRYVGYS
NSPS

Sequences:

>Translated_324_residues
MLLAAFSLLLMAARMPDMKVVPWQQVEVPTQNILLDIAFTGTNPSHGWLVGDKATLLESQDGGLHWQVRKLTALEPEAYL
SSISFAGAEGWVVGQPRILLHTLNEGSDWTSIRLSKQLPGEPILIQALGPGAAEMVTNVGAIYRTEDGGQTWHAQVEEPI
GAIKNIARGPGGEYLAVSSRGSFYFLYTPESRSWKPYPRESSRRIQNMGFGPNGSAWKLNQGAEIAFTSDFTSGEWSKPL
RPGRALSFGYLNAAYQNDHDLWVVGGGGTLIHSPDGGKTWEEAKKLSNIPANFYSIEFFGPDRGFILGQRGTLLRYVGYS
NSPS
>Mature_324_residues
MLLAAFSLLLMAARMPDMKVVPWQQVEVPTQNILLDIAFTGTNPSHGWLVGDKATLLESQDGGLHWQVRKLTALEPEAYL
SSISFAGAEGWVVGQPRILLHTLNEGSDWTSIRLSKQLPGEPILIQALGPGAAEMVTNVGAIYRTEDGGQTWHAQVEEPI
GAIKNIARGPGGEYLAVSSRGSFYFLYTPESRSWKPYPRESSRRIQNMGFGPNGSAWKLNQGAEIAFTSDFTSGEWSKPL
RPGRALSFGYLNAAYQNDHDLWVVGGGGTLIHSPDGGKTWEEAKKLSNIPANFYSIEFFGPDRGFILGQRGTLLRYVGYS
NSPS

Specific function: Unknown. The ortholog in A.thaliana is involved in photosystem II (PSII) assembly, but knockout of the corresponding gene in Synechoccus PCC 7002 has no effect on PSII activity [H]

COG id: COG4447

COG function: function code R; Uncharacterized protein related to plant photosystem II stability/assembly factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 BNR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002860
- InterPro:   IPR016705 [H]

Pfam domain/function: PF02012 BNR [H]

EC number: NA

Molecular weight: Translated: 35459; Mature: 35459

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLAAFSLLLMAARMPDMKVVPWQQVEVPTQNILLDIAFTGTNPSHGWLVGDKATLLESQ
CHHHHHHHHHHHHCCCCCEECCCCEECCCCCCEEEEEEEECCCCCCCEEECCCEEEEECC
DGGLHWQVRKLTALEPEAYLSSISFAGAEGWVVGQPRILLHTLNEGSDWTSIRLSKQLPG
CCCEEEEEEEEEECCHHHHHHHHEECCCCCEEECCCEEEEEEECCCCCEEEEEEECCCCC
EPILIQALGPGAAEMVTNVGAIYRTEDGGQTWHAQVEEPIGAIKNIARGPGGEYLAVSSR
CCEEEEECCCCHHHHHHCCCEEEEECCCCCEEEEEHHHHHHHHHHHHCCCCCCEEEEECC
GSFYFLYTPESRSWKPYPRESSRRIQNMGFGPNGSAWKLNQGAEIAFTSDFTSGEWSKPL
CCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCC
RPGRALSFGYLNAAYQNDHDLWVVGGGGTLIHSPDGGKTWEEAKKLSNIPANFYSIEFFG
CCCCEEEEEEEEEEEECCCCEEEEECCCEEEECCCCCCCHHHHHHHHCCCCCEEEEEEEC
PDRGFILGQRGTLLRYVGYSNSPS
CCCCEEEECCCCEEEEECCCCCCC
>Mature Secondary Structure
MLLAAFSLLLMAARMPDMKVVPWQQVEVPTQNILLDIAFTGTNPSHGWLVGDKATLLESQ
CHHHHHHHHHHHHCCCCCEECCCCEECCCCCCEEEEEEEECCCCCCCEEECCCEEEEECC
DGGLHWQVRKLTALEPEAYLSSISFAGAEGWVVGQPRILLHTLNEGSDWTSIRLSKQLPG
CCCEEEEEEEEEECCHHHHHHHHEECCCCCEEECCCEEEEEEECCCCCEEEEEEECCCCC
EPILIQALGPGAAEMVTNVGAIYRTEDGGQTWHAQVEEPIGAIKNIARGPGGEYLAVSSR
CCEEEEECCCCHHHHHHCCCEEEEECCCCCEEEEEHHHHHHHHHHHHCCCCCCEEEEECC
GSFYFLYTPESRSWKPYPRESSRRIQNMGFGPNGSAWKLNQGAEIAFTSDFTSGEWSKPL
CCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCC
RPGRALSFGYLNAAYQNDHDLWVVGGGGTLIHSPDGGKTWEEAKKLSNIPANFYSIEFFG
CCCCEEEEEEEEEEEECCCCEEEEECCCEEEECCCCCCCHHHHHHHHCCCCCEEEEEEEC
PDRGFILGQRGTLLRYVGYSNSPS
CCCCEEEECCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA