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The map label for this gene is rnhA

Identifier: 86605504

GI number: 86605504

Start: 808142

End: 808642

Strand: Reverse

Name: rnhA

Synonym: CYA_0798

Alternate gene names: 86605504

Gene position: 808642-808142 (Counterclockwise)

Preceding gene: 86605505

Following gene: 86605503

Centisome position: 27.57

GC content: 61.48

Gene sequence:

>501_bases
ATGGCCAAGAGCTTACGTCCGGGCAACCGCCAAGTAGCACCTCCCCCACGGCTGGCCGATTGCCCTCCTAGTGGCATTTT
TACCGACGGGGGCTGTTCCCCCAATCCAGGGCCAGGGGGATGGGCGGTGGTGGTGGTTGAGGATGACCAGATTGTGGATG
AGTTTTACGGAGGGGATCCCGCCAGCACCAACAACCGTATGGAATTGACCGGCCTCATTCGGGCTTTGCAATATTGTCGC
GACACCCAGAGCAACAGCATAGACACCATCTACAGCGATTCCCACCTTTGCGTACAGACCTACAACGATTGGATGGAGCG
CTGGGCAGCGCAGGGGTGGCGGCGGCGCACGGGGCCGGTGGAAAACTTGGATCTGGTGCAGGAGCTGTATCAACTCAAGC
AGCAGTGCCCGCAGGTGCGGGTGGCCTGGATCCCGGCCCATCGGGGTCTGCGCTGGAACGAGTATGTGGATGAGCTGGTC
GCCCGCGCCCGACCCAAGTAG

Upstream 100 bases:

>100_bases
GCTGCCGGTAGCGCGAAAAGATACTTTTCCAGCCACGACGGCGCCGACAGGCCCTCCAGGGGGTAGAATGCAGTTGCCGG
TGTCGGCTAGGGATCCCATC

Downstream 100 bases:

>100_bases
CTGATTTATTTCGATACTTCGGTGAAGGCCTGGGATCACAGACAGGGGCTAAGTCCATCGCCTATGCTCAAGAGGACGGC
TCGTTGCAGGTGGGGTATGC

Product: ribonuclease H

Products: NA

Alternate protein names: RNase H [H]

Number of amino acids: Translated: 166; Mature: 165

Protein sequence:

>166_residues
MAKSLRPGNRQVAPPPRLADCPPSGIFTDGGCSPNPGPGGWAVVVVEDDQIVDEFYGGDPASTNNRMELTGLIRALQYCR
DTQSNSIDTIYSDSHLCVQTYNDWMERWAAQGWRRRTGPVENLDLVQELYQLKQQCPQVRVAWIPAHRGLRWNEYVDELV
ARARPK

Sequences:

>Translated_166_residues
MAKSLRPGNRQVAPPPRLADCPPSGIFTDGGCSPNPGPGGWAVVVVEDDQIVDEFYGGDPASTNNRMELTGLIRALQYCR
DTQSNSIDTIYSDSHLCVQTYNDWMERWAAQGWRRRTGPVENLDLVQELYQLKQQCPQVRVAWIPAHRGLRWNEYVDELV
ARARPK
>Mature_165_residues
AKSLRPGNRQVAPPPRLADCPPSGIFTDGGCSPNPGPGGWAVVVVEDDQIVDEFYGGDPASTNNRMELTGLIRALQYCRD
TQSNSIDTIYSDSHLCVQTYNDWMERWAAQGWRRRTGPVENLDLVQELYQLKQQCPQVRVAWIPAHRGLRWNEYVDELVA
RARPK

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG0328

COG function: function code L; Ribonuclease HI

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RNase H domain [H]

Homologues:

Organism=Escherichia coli, GI1786408, Length=139, Percent_Identity=37.410071942446, Blast_Score=75, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI115532542, Length=155, Percent_Identity=33.5483870967742, Blast_Score=74, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022892
- InterPro:   IPR012337
- InterPro:   IPR002156 [H]

Pfam domain/function: PF00075 RnaseH [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 18740; Mature: 18609

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: PS50879 RNASE_H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKSLRPGNRQVAPPPRLADCPPSGIFTDGGCSPNPGPGGWAVVVVEDDQIVDEFYGGDP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCC
ASTNNRMELTGLIRALQYCRDTQSNSIDTIYSDSHLCVQTYNDWMERWAAQGWRRRTGPV
CCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCC
ENLDLVQELYQLKQQCPQVRVAWIPAHRGLRWNEYVDELVARARPK
CCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AKSLRPGNRQVAPPPRLADCPPSGIFTDGGCSPNPGPGGWAVVVVEDDQIVDEFYGGDP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCC
ASTNNRMELTGLIRALQYCRDTQSNSIDTIYSDSHLCVQTYNDWMERWAAQGWRRRTGPV
CCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCC
ENLDLVQELYQLKQQCPQVRVAWIPAHRGLRWNEYVDELVARARPK
CCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA