| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is cca [H]
Identifier: 86605414
GI number: 86605414
Start: 708185
End: 710911
Strand: Reverse
Name: cca [H]
Synonym: CYA_0702
Alternate gene names: 86605414
Gene position: 710911-708185 (Counterclockwise)
Preceding gene: 86605415
Following gene: 86605407
Centisome position: 24.24
GC content: 63.22
Gene sequence:
>2727_bases ATGGATCTGATCCTGTGCCATCAATCGGCGGATTTCGACACCCTGGGGGCGGCGGTGGGAGCGGCCTGCCTGTATCCGGG TGCCCGCATCGCCTTGACCGGGGGATCCCTGCCGGGGGTGCAGGAGTTTTTGGCCTTGTACCGAGATGAATTTCCCCTCA TCGAGCTGCGCTCTGTGGATCCGGGACAGGTGCAGCGGTGGATTGTTGTGGATTGTCACGATCCGGATCGCTTGGGAAAA GCTGCCGCTTGGTTGAGCGTCCCCGGCACCCAAATCGAGATTTTCGACCATCACCTCAGGGATCCGGAAACCCCACCGGA TGGCTTTTGGCCGCAGCAGCAGGTGAACTGTCATATCGAGGCCGTGGGGGCCACCTGTACCTTGCTGGTGGAGCGGCTGC AGGCTGCTGGGATCCCTCTCAGCCCTTTTGAGCGGCTGGCGCTGGCTTTGGGCATTCACATGGATACGGGATCCCTGACC TTCCCGGAGACCACCGCCCGCGATGCTGCTGCCCTGAGCTGGCTGTTGGATCAGGGGGTGAACCTGGTCTTGTTGCGGCG CTTTTTGGGGGATGGCCTCACCCCAGAGATGCGCGAGCTGCTCAGCCAGGGGTTGGCCCAGATGCAGGTGCAGCAGGTGG GGGAGTATCGCCTGGGAGAATGGCTGCTGGAGCTGCCGGAGTTTGTGCCCGGCTTGGCCAGCCTGGTGATGCGGCTGATG GATCTGACGGGAGTGGATGTGCTGCTCTTGGTGGCGCGGCAGGGGGAGCGGCTCAGCCTGATCGGGCGGGCGCGGCAGGA GTTTGCCCAGTTGGGCAGGGTGATGGCCCTCTACGGCGGCGGTGGACACGATTGTGCTGCAGCAGCCACGTTAAAAGCCA GCCCAGAGCAGCCTTTGCCCGACCCGGCCCAAGTCATGGCGGCCCTCAGGCAGGCTGTCCAAGAGCGGATCCCGCCCCCG GTGACGGCCAAAGATTTGATGTCGGCTCCGGTGCGCACCATCCGACCGGAGATCACCATCGACGAGGCCCAGCGGGTGCT GCTGCGCTACGGCCATTCCGGCCTGGTGGTGGTGGACGCTCAAGGTCGCCTGGTGGGGGTGATCTCGCGGCGGGATATCG ATATCGCCCTGCACCACGGATTTGGCCATGCCCCCGTCAAGGGCTACATGACCACCGACGTGAAAACCCTCTCCCCCGAC ACCCCCTTGGCGGAGATTCAGCGGTTGATGGTGCAGTGGGATATTGGCCGCCTGCCGGTTCTCCAGGATGGACAGTTGGT GGGCATTGTAACTCGCACCGATGTGTTGCGGCACCTACACGAGTTGCCGGCCCTCTCACCCCAGTTGGCTTTGCCCACCC TTTCCTGCCCTTTGGATCTCACCTTCGCGGCCCTGTCGGAGCGGCATCGACAGTTGCTGGAGCAGGCCGCCCACATCGCC GATGAGAAGGGCCTGAGGTTGTATCTGGTGGGGGGAACGGTGCGGGATCTGCTGCTGCACCGGTGGGGACGGCAGCCCTC GCCCAACCTGGAGCGGCTGGATCTGGACTTGGTGGTGGATGGGCCCTACTCTCCGGCCCTGGATGGGACGGATCCCCCGG GCTGGGGCTTGATTTTGGGACAAGCGCTCAAACAGCGCTTCCCGGAAGCGCGGCTGGAGATCCACGGCAAATTCCAAACG GCGGCCTTGATCTGGCCAGGCGGCTTTTGTGTGGATATCGCCAGCGCCCGCACGGAGTTTTATCCCTACCCGGCCTCTCC CCCCGAAGTGGCCATGGGATCCATCCAGCAAGACCTCTATCGGCGGGATTTTTCCATCAACGCCTTGGCCTTGCGCCTCA ACGGCCCCCAGCGAGGACAGGTGCTGGATTTTTTCGGCGGACAAGCAGATCTGCAACAGGGGATCATCCGGGCATTACAC CCCAACAGCTTCATCGAGGATCCCACCCGCATTTATCGGGCGGTGCGCTTTGCGGTGCGCTTGGGCTTCGCCCTGGACTC GACCACAGAAAAATGGATCCGCGCTGCCGTGGCCAGTGGTCTGCACGATGCCGTCGGCGGGGATCGCCTCAAGCAGGAGC TGGCCTACATTCTCGGATCCCGCGATTGGCCCCAAGCCTTTGAGCGGCTGGCAGAATGGGGAGCTTTGCGCTGTATTCAC CCCGACCTGGAGTGGGATCCCTCCCTGTGTCAGCGGTTGCAACGGGTGGGCCGCTGGGCCTATCACTTTCGCCGCCGCTA TCCTGAGCTGGGATCCCAGGAGATCTGGCAACTGCGCCTAGAGGCTCTCCTCCTCACCCTACCCCAAGCCCCCCAGGTGG CCAGCCAACTCCACCTCACCCAAGCAGGCATCGAACGCCTCAGCCATTCCTCCTATTACCAAACCCTGTTGGCCCAACTG GATCCCAGCACCCTCTCTCCGGCCCAGGTGGTGCAACTGCTGCAGGGGCTGCGGATCCCAGCAGTGATTTTGGTGGCCGG GATCGCCCCCAAGCCGGCCCGGCGGCTGATCTGGCGCTATTTGCAGGAGTGGTACTGGGTGAAGCCGCTGCTCAACGGCC ACGATCTGCGTCGTCTGGGTTATAAGCCAGGTCGCCCCTTCCAAGCCATTTTGGAGCAACTGCGTTGCCTCACCCTGAAC GGTGAACTCACCACCCCGGCAGAAGCTGAAGCCTGGCTACAAGAACACTTCCCCCTGCTGCAAGCTCAATACCGAGGAAG AAAGTAG
Upstream 100 bases:
>100_bases CGGAGTTGAGCAGCCCTTCATTTCTTCTTGTCCGACTCCAACAAGAGGGATCCCGGCTTAGGCCAGGATGGAAGAGCGGA ATACGACAACTCTTGCCGCA
Downstream 100 bases:
>100_bases AAGGGCAAATCAGTCGAAATAGAAGAGAGTGACCAACTTGTGTTGTTCCTCAGCATGCTTGCAGGCATCCAGCAGCGTGA CGCTGTCGTGGAAGACAAAG
Product: polyA polymerase family protein
Products: NA
Alternate protein names: CCA-adding enzyme; tRNA CCA-pyrophosphorylase; tRNA adenylyl-/cytidylyl-transferase; tRNA nucleotidyltransferase; tRNA-NT; 2'-nucleotidase; 2',3'-cyclic phosphodiesterase; Phosphatase [H]
Number of amino acids: Translated: 908; Mature: 908
Protein sequence:
>908_residues MDLILCHQSADFDTLGAAVGAACLYPGARIALTGGSLPGVQEFLALYRDEFPLIELRSVDPGQVQRWIVVDCHDPDRLGK AAAWLSVPGTQIEIFDHHLRDPETPPDGFWPQQQVNCHIEAVGATCTLLVERLQAAGIPLSPFERLALALGIHMDTGSLT FPETTARDAAALSWLLDQGVNLVLLRRFLGDGLTPEMRELLSQGLAQMQVQQVGEYRLGEWLLELPEFVPGLASLVMRLM DLTGVDVLLLVARQGERLSLIGRARQEFAQLGRVMALYGGGGHDCAAAATLKASPEQPLPDPAQVMAALRQAVQERIPPP VTAKDLMSAPVRTIRPEITIDEAQRVLLRYGHSGLVVVDAQGRLVGVISRRDIDIALHHGFGHAPVKGYMTTDVKTLSPD TPLAEIQRLMVQWDIGRLPVLQDGQLVGIVTRTDVLRHLHELPALSPQLALPTLSCPLDLTFAALSERHRQLLEQAAHIA DEKGLRLYLVGGTVRDLLLHRWGRQPSPNLERLDLDLVVDGPYSPALDGTDPPGWGLILGQALKQRFPEARLEIHGKFQT AALIWPGGFCVDIASARTEFYPYPASPPEVAMGSIQQDLYRRDFSINALALRLNGPQRGQVLDFFGGQADLQQGIIRALH PNSFIEDPTRIYRAVRFAVRLGFALDSTTEKWIRAAVASGLHDAVGGDRLKQELAYILGSRDWPQAFERLAEWGALRCIH PDLEWDPSLCQRLQRVGRWAYHFRRRYPELGSQEIWQLRLEALLLTLPQAPQVASQLHLTQAGIERLSHSSYYQTLLAQL DPSTLSPAQVVQLLQGLRIPAVILVAGIAPKPARRLIWRYLQEWYWVKPLLNGHDLRRLGYKPGRPFQAILEQLRCLTLN GELTTPAEAEAWLQEHFPLLQAQYRGRK
Sequences:
>Translated_908_residues MDLILCHQSADFDTLGAAVGAACLYPGARIALTGGSLPGVQEFLALYRDEFPLIELRSVDPGQVQRWIVVDCHDPDRLGK AAAWLSVPGTQIEIFDHHLRDPETPPDGFWPQQQVNCHIEAVGATCTLLVERLQAAGIPLSPFERLALALGIHMDTGSLT FPETTARDAAALSWLLDQGVNLVLLRRFLGDGLTPEMRELLSQGLAQMQVQQVGEYRLGEWLLELPEFVPGLASLVMRLM DLTGVDVLLLVARQGERLSLIGRARQEFAQLGRVMALYGGGGHDCAAAATLKASPEQPLPDPAQVMAALRQAVQERIPPP VTAKDLMSAPVRTIRPEITIDEAQRVLLRYGHSGLVVVDAQGRLVGVISRRDIDIALHHGFGHAPVKGYMTTDVKTLSPD TPLAEIQRLMVQWDIGRLPVLQDGQLVGIVTRTDVLRHLHELPALSPQLALPTLSCPLDLTFAALSERHRQLLEQAAHIA DEKGLRLYLVGGTVRDLLLHRWGRQPSPNLERLDLDLVVDGPYSPALDGTDPPGWGLILGQALKQRFPEARLEIHGKFQT AALIWPGGFCVDIASARTEFYPYPASPPEVAMGSIQQDLYRRDFSINALALRLNGPQRGQVLDFFGGQADLQQGIIRALH PNSFIEDPTRIYRAVRFAVRLGFALDSTTEKWIRAAVASGLHDAVGGDRLKQELAYILGSRDWPQAFERLAEWGALRCIH PDLEWDPSLCQRLQRVGRWAYHFRRRYPELGSQEIWQLRLEALLLTLPQAPQVASQLHLTQAGIERLSHSSYYQTLLAQL DPSTLSPAQVVQLLQGLRIPAVILVAGIAPKPARRLIWRYLQEWYWVKPLLNGHDLRRLGYKPGRPFQAILEQLRCLTLN GELTTPAEAEAWLQEHFPLLQAQYRGRK >Mature_908_residues MDLILCHQSADFDTLGAAVGAACLYPGARIALTGGSLPGVQEFLALYRDEFPLIELRSVDPGQVQRWIVVDCHDPDRLGK AAAWLSVPGTQIEIFDHHLRDPETPPDGFWPQQQVNCHIEAVGATCTLLVERLQAAGIPLSPFERLALALGIHMDTGSLT FPETTARDAAALSWLLDQGVNLVLLRRFLGDGLTPEMRELLSQGLAQMQVQQVGEYRLGEWLLELPEFVPGLASLVMRLM DLTGVDVLLLVARQGERLSLIGRARQEFAQLGRVMALYGGGGHDCAAAATLKASPEQPLPDPAQVMAALRQAVQERIPPP VTAKDLMSAPVRTIRPEITIDEAQRVLLRYGHSGLVVVDAQGRLVGVISRRDIDIALHHGFGHAPVKGYMTTDVKTLSPD TPLAEIQRLMVQWDIGRLPVLQDGQLVGIVTRTDVLRHLHELPALSPQLALPTLSCPLDLTFAALSERHRQLLEQAAHIA DEKGLRLYLVGGTVRDLLLHRWGRQPSPNLERLDLDLVVDGPYSPALDGTDPPGWGLILGQALKQRFPEARLEIHGKFQT AALIWPGGFCVDIASARTEFYPYPASPPEVAMGSIQQDLYRRDFSINALALRLNGPQRGQVLDFFGGQADLQQGIIRALH PNSFIEDPTRIYRAVRFAVRLGFALDSTTEKWIRAAVASGLHDAVGGDRLKQELAYILGSRDWPQAFERLAEWGALRCIH PDLEWDPSLCQRLQRVGRWAYHFRRRYPELGSQEIWQLRLEALLLTLPQAPQVASQLHLTQAGIERLSHSSYYQTLLAQL DPSTLSPAQVVQLLQGLRIPAVILVAGIAPKPARRLIWRYLQEWYWVKPLLNGHDLRRLGYKPGRPFQAILEQLRCLTLN GELTTPAEAEAWLQEHFPLLQAQYRGRK
Specific function: Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing
COG id: COG0617
COG function: function code J; tRNA nucleotidyltransferase/poly(A) polymerase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. Bacterial CCA-adding enzyme type 1 subfamily [H]
Homologues:
Organism=Escherichia coli, GI1789436, Length=245, Percent_Identity=31.8367346938775, Blast_Score=78, Evalue=3e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012006 - InterPro: IPR003607 - InterPro: IPR002646 [H]
Pfam domain/function: PF01743 PolyA_pol [H]
EC number: =2.7.7.21; =2.7.7.25 [H]
Molecular weight: Translated: 100912; Mature: 100912
Theoretical pI: Translated: 6.68; Mature: 6.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDLILCHQSADFDTLGAAVGAACLYPGARIALTGGSLPGVQEFLALYRDEFPLIELRSVD CCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEECCC PGQVQRWIVVDCHDPDRLGKAAAWLSVPGTQIEIFDHHLRDPETPPDGFWPQQQVNCHIE CCCCCEEEEEECCCHHHHCCHHHEEECCCCEEEEEHHHCCCCCCCCCCCCCCCCCCEEEE AVGATCTLLVERLQAAGIPLSPFERLALALGIHMDTGSLTFPETTARDAAALSWLLDQGV EHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHCCC NLVLLRRFLGDGLTPEMRELLSQGLAQMQVQQVGEYRLGEWLLELPEFVPGLASLVMRLM HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DLTGVDVLLLVARQGERLSLIGRARQEFAQLGRVMALYGGGGHDCAAAATLKASPEQPLP HCCCHHHHHHHHCCCCEEHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHEECCCCCCCCC DPAQVMAALRQAVQERIPPPVTAKDLMSAPVRTIRPEITIDEAQRVLLRYGHSGLVVVDA CHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHCCCCCHHHHHHHHHHCCCCCEEEEEC QGRLVGVISRRDIDIALHHGFGHAPVKGYMTTDVKTLSPDTPLAEIQRLMVQWDIGRLPV CCCEEEEEECCCEEEEEECCCCCCCCCCEEECCCEECCCCCCHHHHHHHHHHHCCCCCCE LQDGQLVGIVTRTDVLRHLHELPALSPQLALPTLSCPLDLTFAALSERHRQLLEQAAHIA ECCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH DEKGLRLYLVGGTVRDLLLHRWGRQPSPNLERLDLDLVVDGPYSPALDGTDPPGWGLILG CCCCCEEEEECCHHHHHHHHHHCCCCCCCHHHEEEEEEECCCCCCCCCCCCCCCHHHHHH QALKQRFPEARLEIHGKFQTAALIWPGGFCVDIASARTEFYPYPASPPEVAMGSIQQDLY HHHHHHCCCCCEEEECCEEEEEEEECCCCEEEHHHHCCCCCCCCCCCHHHHHHHHHHHHH RRDFSINALALRLNGPQRGQVLDFFGGQADLQQGIIRALHPNSFIEDPTRIYRAVRFAVR HCCCCCEEEEEEECCCCCCCEEECCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH LGFALDSTTEKWIRAAVASGLHDAVGGDRLKQELAYILGSRDWPQAFERLAEWGALRCIH HHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEC PDLEWDPSLCQRLQRVGRWAYHFRRRYPELGSQEIWQLRLEALLLTLPQAPQVASQLHLT CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH QAGIERLSHSSYYQTLLAQLDPSTLSPAQVVQLLQGLRIPAVILVAGIAPKPARRLIWRY HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHEECCCCCHHHHHHHHH LQEWYWVKPLLNGHDLRRLGYKPGRPFQAILEQLRCLTLNGELTTPAEAEAWLQEHFPLL HHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHEEEECCCCCCCHHHHHHHHHCCHHH QAQYRGRK HHHCCCCC >Mature Secondary Structure MDLILCHQSADFDTLGAAVGAACLYPGARIALTGGSLPGVQEFLALYRDEFPLIELRSVD CCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEECCC PGQVQRWIVVDCHDPDRLGKAAAWLSVPGTQIEIFDHHLRDPETPPDGFWPQQQVNCHIE CCCCCEEEEEECCCHHHHCCHHHEEECCCCEEEEEHHHCCCCCCCCCCCCCCCCCCEEEE AVGATCTLLVERLQAAGIPLSPFERLALALGIHMDTGSLTFPETTARDAAALSWLLDQGV EHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHCCC NLVLLRRFLGDGLTPEMRELLSQGLAQMQVQQVGEYRLGEWLLELPEFVPGLASLVMRLM HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DLTGVDVLLLVARQGERLSLIGRARQEFAQLGRVMALYGGGGHDCAAAATLKASPEQPLP HCCCHHHHHHHHCCCCEEHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHEECCCCCCCCC DPAQVMAALRQAVQERIPPPVTAKDLMSAPVRTIRPEITIDEAQRVLLRYGHSGLVVVDA CHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHCCCCCHHHHHHHHHHCCCCCEEEEEC QGRLVGVISRRDIDIALHHGFGHAPVKGYMTTDVKTLSPDTPLAEIQRLMVQWDIGRLPV CCCEEEEEECCCEEEEEECCCCCCCCCCEEECCCEECCCCCCHHHHHHHHHHHCCCCCCE LQDGQLVGIVTRTDVLRHLHELPALSPQLALPTLSCPLDLTFAALSERHRQLLEQAAHIA ECCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH DEKGLRLYLVGGTVRDLLLHRWGRQPSPNLERLDLDLVVDGPYSPALDGTDPPGWGLILG CCCCCEEEEECCHHHHHHHHHHCCCCCCCHHHEEEEEEECCCCCCCCCCCCCCCHHHHHH QALKQRFPEARLEIHGKFQTAALIWPGGFCVDIASARTEFYPYPASPPEVAMGSIQQDLY HHHHHHCCCCCEEEECCEEEEEEEECCCCEEEHHHHCCCCCCCCCCCHHHHHHHHHHHHH RRDFSINALALRLNGPQRGQVLDFFGGQADLQQGIIRALHPNSFIEDPTRIYRAVRFAVR HCCCCCEEEEEEECCCCCCCEEECCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH LGFALDSTTEKWIRAAVASGLHDAVGGDRLKQELAYILGSRDWPQAFERLAEWGALRCIH HHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEC PDLEWDPSLCQRLQRVGRWAYHFRRRYPELGSQEIWQLRLEALLLTLPQAPQVASQLHLT CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH QAGIERLSHSSYYQTLLAQLDPSTLSPAQVVQLLQGLRIPAVILVAGIAPKPARRLIWRY HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHEECCCCCHHHHHHHHH LQEWYWVKPLLNGHDLRRLGYKPGRPFQAILEQLRCLTLNGELTTPAEAEAWLQEHFPLL HHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHEEEECCCCCCCHHHHHHHHHCCHHH QAQYRGRK HHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA