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The map label for this gene is ydcM [C]

Identifier: 86605402

GI number: 86605402

Start: 698056

End: 699204

Strand: Reverse

Name: ydcM [C]

Synonym: CYA_0690

Alternate gene names: 86605402

Gene position: 699204-698056 (Counterclockwise)

Preceding gene: 86605403

Following gene: 86605396

Centisome position: 23.84

GC content: 56.22

Gene sequence:

>1149_bases
ATGACCCAAGTCCTGACCGTATCCTGCAAGCTCAAGGCGTCCCAGTCACAAGCCGCCAAATTGGACGCGACTTTGGAGGC
TTTTGGCCAAGCCTTGAATTGGGTCAACCAGAACACGCCGGAGAAAGTCGCCAACGCCGTTAAGCTCCAGTCTCTGTGCT
ACCGCGAAATCCGTGCCCGGTTCGGCTTATCCAGTAACTTGGCTCAGCAGGTCTGCAGACGGCTGGCCGGCGCCCGTAAA
GTTGCCCAACAGAAAAACCGCCCCGTCAAAGCGTTCAAGAGAGGCTTTGCGACCTACGATGCCCGTATCTTTTCGTTCCG
CGAGAAAGACTGGACGGTGTCGCTGACCACCGTTGGGGGTCGAGAGCGCTTTGAGCTGGCGATTGGCCGCTACCAGAGAG
AACAGTTGGCAGGCTCCAATCCCAAATCTGCCACTCTGGTCAAGCGTAAAGACGGCTCCTACTCTATTCAGATCTGTGTG
GAAGCGGAGCCATCCCCACCGCAACGCACGGGTAGAGTGCTGGGGGTGGACTTGGGAAGGACGGATATTGCCCATACGTC
AGAAGGGGGCAATTGGAATGGACAGCAGTTGAACAAAGTCCGAGACCATCACTCGCGGTTGAAGGCGGTACTCCAACGCA
AAGCCAGTGAGGGCACACGCAGCTCGCGGCGCAGATGCCGTCAACTGCTGCAACGGCTGTCTGGCAAGGAGAGACGCTTT
CAGTCGCGTCAGCGTTGCGTAGCAAAAACGTGGGTCAATCATCGCATCTCCAAAGCTATTGTCTCTAGGGCAAAGGCGAC
AAACAGCGCTATTGCCCTGGAAGACCTGACAGGGATCCGGAAAAGAGTCAATCAACAGCCGCGCAGCAAAGCCGAGCGGC
GCAGGGCCAACAGTTGGGCGTTCTACCAACTACGTCAATTTCTGGAATACAAGGCGAGGGCTGCAGGGGTTTCTCTGATT
CTTGTTCCGCCTGCCTACACGTCGCAGACCTGTCACAAGTGTTTACACATCCATCCCGATCCTGCGCAATCTTACCGCAG
TGGCAAGTCGTTCAAGTGTGGGCACTGTGGATGGGAAGGGGATGCGGATTTGAATGGTGCGAATGTGATTGCGCTTTTGG
GGGCTGTCGTAAACCAGCCTAGAGGTTAA

Upstream 100 bases:

>100_bases
TTTCCAAGTTACCAAGTTGCCTGTCAGCTAGAAATCGCAGGAGCCCCGCACTGTACCCGTAGGGTCAGTGCCGGGAGGAA
TGCGAGGTTACAATAGAACC

Downstream 100 bases:

>100_bases
GCCTACGGCTCGCTTCGCGAACGGGCCTGTTTTGTTCTCTGGTAGAGCAGAGCAGGCTCAGGGCTACTGAAAGCCCGCTC
CGTACCGCTTAGCGGTCGGA

Product: ISSoc1, transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 381

Protein sequence:

>382_residues
MTQVLTVSCKLKASQSQAAKLDATLEAFGQALNWVNQNTPEKVANAVKLQSLCYREIRARFGLSSNLAQQVCRRLAGARK
VAQQKNRPVKAFKRGFATYDARIFSFREKDWTVSLTTVGGRERFELAIGRYQREQLAGSNPKSATLVKRKDGSYSIQICV
EAEPSPPQRTGRVLGVDLGRTDIAHTSEGGNWNGQQLNKVRDHHSRLKAVLQRKASEGTRSSRRRCRQLLQRLSGKERRF
QSRQRCVAKTWVNHRISKAIVSRAKATNSAIALEDLTGIRKRVNQQPRSKAERRRANSWAFYQLRQFLEYKARAAGVSLI
LVPPAYTSQTCHKCLHIHPDPAQSYRSGKSFKCGHCGWEGDADLNGANVIALLGAVVNQPRG

Sequences:

>Translated_382_residues
MTQVLTVSCKLKASQSQAAKLDATLEAFGQALNWVNQNTPEKVANAVKLQSLCYREIRARFGLSSNLAQQVCRRLAGARK
VAQQKNRPVKAFKRGFATYDARIFSFREKDWTVSLTTVGGRERFELAIGRYQREQLAGSNPKSATLVKRKDGSYSIQICV
EAEPSPPQRTGRVLGVDLGRTDIAHTSEGGNWNGQQLNKVRDHHSRLKAVLQRKASEGTRSSRRRCRQLLQRLSGKERRF
QSRQRCVAKTWVNHRISKAIVSRAKATNSAIALEDLTGIRKRVNQQPRSKAERRRANSWAFYQLRQFLEYKARAAGVSLI
LVPPAYTSQTCHKCLHIHPDPAQSYRSGKSFKCGHCGWEGDADLNGANVIALLGAVVNQPRG
>Mature_381_residues
TQVLTVSCKLKASQSQAAKLDATLEAFGQALNWVNQNTPEKVANAVKLQSLCYREIRARFGLSSNLAQQVCRRLAGARKV
AQQKNRPVKAFKRGFATYDARIFSFREKDWTVSLTTVGGRERFELAIGRYQREQLAGSNPKSATLVKRKDGSYSIQICVE
AEPSPPQRTGRVLGVDLGRTDIAHTSEGGNWNGQQLNKVRDHHSRLKAVLQRKASEGTRSSRRRCRQLLQRLSGKERRFQ
SRQRCVAKTWVNHRISKAIVSRAKATNSAIALEDLTGIRKRVNQQPRSKAERRRANSWAFYQLRQFLEYKARAAGVSLIL
VPPAYTSQTCHKCLHIHPDPAQSYRSGKSFKCGHCGWEGDADLNGANVIALLGAVVNQPRG

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=241, Percent_Identity=28.6307053941909, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 42793; Mature: 42662

Theoretical pI: Translated: 11.37; Mature: 11.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQVLTVSCKLKASQSQAAKLDATLEAFGQALNWVNQNTPEKVANAVKLQSLCYREIRAR
CCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRRLAGARKVAQQKNRPVKAFKRGFATYDARIFSFREKDWTVSLTTVGG
CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEECCCEEEEEEECCC
RERFELAIGRYQREQLAGSNPKSATLVKRKDGSYSIQICVEAEPSPPQRTGRVLGVDLGR
CHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEEEECCCCCHHHCCCEEEEECCC
TDIAHTSEGGNWNGQQLNKVRDHHSRLKAVLQRKASEGTRSSRRRCRQLLQRLSGKERRF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHH
QSRQRCVAKTWVNHRISKAIVSRAKATNSAIALEDLTGIRKRVNQQPRSKAERRRANSWA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHH
FYQLRQFLEYKARAAGVSLILVPPAYTSQTCHKCLHIHPDPAQSYRSGKSFKCGHCGWEG
HHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCC
DADLNGANVIALLGAVVNQPRG
CCCCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TQVLTVSCKLKASQSQAAKLDATLEAFGQALNWVNQNTPEKVANAVKLQSLCYREIRAR
CCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRRLAGARKVAQQKNRPVKAFKRGFATYDARIFSFREKDWTVSLTTVGG
CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEECCCEEEEEEECCC
RERFELAIGRYQREQLAGSNPKSATLVKRKDGSYSIQICVEAEPSPPQRTGRVLGVDLGR
CHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEEEECCCCCHHHCCCEEEEECCC
TDIAHTSEGGNWNGQQLNKVRDHHSRLKAVLQRKASEGTRSSRRRCRQLLQRLSGKERRF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHH
QSRQRCVAKTWVNHRISKAIVSRAKATNSAIALEDLTGIRKRVNQQPRSKAERRRANSWA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHH
FYQLRQFLEYKARAAGVSLILVPPAYTSQTCHKCLHIHPDPAQSYRSGKSFKCGHCGWEG
HHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCC
DADLNGANVIALLGAVVNQPRG
CCCCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]