| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is bchJ
Identifier: 86605242
GI number: 86605242
Start: 540751
End: 541434
Strand: Reverse
Name: bchJ
Synonym: CYA_0525
Alternate gene names: NA
Gene position: 541434-540751 (Counterclockwise)
Preceding gene: 86605243
Following gene: 86605241
Centisome position: 18.46
GC content: 58.48
Gene sequence:
>684_bases ATGGTTAGCACCACCACTCGATCGGATCCCCGTCCCGCAGTCACCATGCCGGTGGGCCGCGACAAGCACGCTCACTACAG CTACCGCGATTTCTTCCGCTTTAACCGAGAGCAAGGCACGATTATCGACTGGAATAACACCCAAAACCTGCTGCTTAGCG AAGACTTCATTGTCGGCCTGCAGGCCGGCCTAGAGCGGGAAGTGGGCGATGCCTCTGCGGCGGTGATGTACACCATCGGC AAGGAGTGGGGCGTCCGCGATGCCCAGCACTTTTCCCAGTGGTACGAGCGGGAGTACGGGGTTGGGGTCAAGCAGTCCAA CCTTTTGTTTTTGCTGGAGACCTGGTGGTGGCCCTTTACGGCGCAAGGGTGGGGCAAGTGGGAGGTGGAAACCGAATCCA AACAAAAAGGGTTCTTGTTCATCAACCTGTTTGACTCGATGGTGGCCCGCACCCTGGGCGACGTGGGCAAACCGGTTTGT CACCTCTATGCCGGGCTGTTTGCCGGATTTTTCTCTGCCATGACCTCCCGTGAGCTGGCCTGCATCGAGATCCAGTGCTA CGCAATGGGCGAAACCTACTGCAAGTTTTTGCTGGGCAGCCAAGAGCGCATCGATGCCGCCAATTTCTGGATGAGCGAAG GGGCCAGCGCCCGTGAGATCGAGCAGCGTTTGCGCCAACTGTGA
Upstream 100 bases:
>100_bases TAGAGGCTCAATAGATTGAATTTCAACAAGAAGGCAGCCCATCAAAGCTAGGGACTTTTCCGATTACTTTGCCGTCTAGA TTGCTCCTTAGGAGAAAGCC
Downstream 100 bases:
>100_bases GGCCTGCCTGTGGCTTTTGCAGTCCCTCTCTTCGGCATTGTGGGGAGGATGCCTATGCTTACTTCCAACCTCAACCCCAA TCTGGACTTAGGGCAACCGC
Product: bacteriochlorophyll 4-vinyl reductase
Products: NA
Alternate protein names: 4-Vinyl Reductase 4VR; Bacteriochlorophyll 4-Vinyl Reductase
Number of amino acids: Translated: 227; Mature: 227
Protein sequence:
>227_residues MVSTTTRSDPRPAVTMPVGRDKHAHYSYRDFFRFNREQGTIIDWNNTQNLLLSEDFIVGLQAGLEREVGDASAAVMYTIG KEWGVRDAQHFSQWYEREYGVGVKQSNLLFLLETWWWPFTAQGWGKWEVETESKQKGFLFINLFDSMVARTLGDVGKPVC HLYAGLFAGFFSAMTSRELACIEIQCYAMGETYCKFLLGSQERIDAANFWMSEGASAREIEQRLRQL
Sequences:
>Translated_227_residues MVSTTTRSDPRPAVTMPVGRDKHAHYSYRDFFRFNREQGTIIDWNNTQNLLLSEDFIVGLQAGLEREVGDASAAVMYTIG KEWGVRDAQHFSQWYEREYGVGVKQSNLLFLLETWWWPFTAQGWGKWEVETESKQKGFLFINLFDSMVARTLGDVGKPVC HLYAGLFAGFFSAMTSRELACIEIQCYAMGETYCKFLLGSQERIDAANFWMSEGASAREIEQRLRQL >Mature_227_residues MVSTTTRSDPRPAVTMPVGRDKHAHYSYRDFFRFNREQGTIIDWNNTQNLLLSEDFIVGLQAGLEREVGDASAAVMYTIG KEWGVRDAQHFSQWYEREYGVGVKQSNLLFLLETWWWPFTAQGWGKWEVETESKQKGFLFINLFDSMVARTLGDVGKPVC HLYAGLFAGFFSAMTSRELACIEIQCYAMGETYCKFLLGSQERIDAANFWMSEGASAREIEQRLRQL
Specific function: Unknown
COG id: COG1719
COG function: function code R; Predicted hydrocarbon binding protein (contains V4R domain)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26106; Mature: 26106
Theoretical pI: Translated: 5.37; Mature: 5.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVSTTTRSDPRPAVTMPVGRDKHAHYSYRDFFRFNREQGTIIDWNNTQNLLLSEDFIVGL CCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCEEECCCCCCEEEECHHHHHH QAGLEREVGDASAAVMYTIGKEWGVRDAQHFSQWYEREYGVGVKQSNLLFLLETWWWPFT HHCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEE AQGWGKWEVETESKQKGFLFINLFDSMVARTLGDVGKPVCHLYAGLFAGFFSAMTSRELA CCCCCEEEEECCCCCCCEEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEE CIEIQCYAMGETYCKFLLGSQERIDAANFWMSEGASAREIEQRLRQL EEEEEEEECCHHHHHHHHCCHHHCCHHHHHHHCCCCHHHHHHHHHCC >Mature Secondary Structure MVSTTTRSDPRPAVTMPVGRDKHAHYSYRDFFRFNREQGTIIDWNNTQNLLLSEDFIVGL CCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCEEECCCCCCEEEECHHHHHH QAGLEREVGDASAAVMYTIGKEWGVRDAQHFSQWYEREYGVGVKQSNLLFLLETWWWPFT HHCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEE AQGWGKWEVETESKQKGFLFINLFDSMVARTLGDVGKPVCHLYAGLFAGFFSAMTSRELA CCCCCEEEEECCCCCCCEEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEE CIEIQCYAMGETYCKFLLGSQERIDAANFWMSEGASAREIEQRLRQL EEEEEEEECCHHHHHHHHCCHHHCCHHHHHHHCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA