| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86604922
Identifier: 86604922
GI number: 86604922
Start: 197547
End: 198674
Strand: Reverse
Name: 86604922
Synonym: CYA_0198
Alternate gene names: NA
Gene position: 198674-197547 (Counterclockwise)
Preceding gene: 86604923
Following gene: 86604921
Centisome position: 6.77
GC content: 60.11
Gene sequence:
>1128_bases ATGGTTTTCAAGAGTTTTCGCCGCCGAGCCAGCAGAGGGTTTACCCTCATTGAGTTGTTGGTCTCGCTGCTGATTGCCTC CATCTTTCTCCTGGCCACAGGGATGATCGTCGTCGAGACGATGCGGCTGGATCGGGAGGAGACAGGGCGCACCCAGGTGC AGGCGGAGCTGACCCAAGCCATGGAATATATCCAGCAGGATCTGGCGGAGGCTCTCTACATTTACAACGACACCGAACAA CCCAATGGAGACGGGATCCCGGATGTTATCCAGCGGCTTTACACCCCCGGCTGGATCCGCCAACCCGCGGGCGCTATCCC GGTTGTCGCCTTTTGGAAGCTGGAGCCGATCCCGCAGGGATGCTACGCGGGCAACCCCACCTTGCAACAGATTCGCGAAG GCCGTGCTAGATTGCCCAACCAACCACCTGATGGGTTCCCGCGCGACCAGAACGGCAGAAATGCGGATTGGGAAACGCTG CTCAGCCGCCGCGGCATCTACACCTTGGTGGTGTATTACCTGCGCCGCAACTACAACAACGCCGGCAACTTGGCGGATGG TTCGACAACCCCTTGGGAAGGCAACGCGCGGATCGAGCGTTTTGAGCTGAGACCTTTTGCAAGGCAGGGGAACAACGACT GCGCCGGGCGCAGCCCGTTCTTTGTCGAAGATCCCGATCCTTTCCGAGATGGTTTTCTCGCTTGGCCTTCCGAGCAGGCC CGAGCACGCCAGATCCCGATTGCCGGCAGGACAGATGGCCCCCGCCTGACAACTCTAGTCTCCAACATCTTCAGCAGCCG AGAGGGAAGTCCGCAGGTTGCGCCCGCTTGCCCGCAGGGCTATGCCTTTGGTGGCGGCAGGCCCAACGGCGTCACCTTCC CAGAGCTGGAAGATAACCAAAACGACGTGGGCTTCTATGTCTGCGTGCGGCAAAGCGTCGGCGCTGACCGACCGCAGGAT GTGATCATCAACATCACCGCCACGGCCATGGAGCGGGCCAACCCTGGCCTTTTCCGTCGCTACATCCGAAATGCCACCAG CGTCGATATCTCAGAGGTGTCGCGCTACTTGCTGCCAATGCAAACACTGGTTCTTGCCCGCGGCGTTATCAACCGTCAGC TCTCCTAG
Upstream 100 bases:
>100_bases GGTGCCGGGCTTTCCCCCTGCCTGTTAATCCTGTTGCACCGTGAGGTAGAGCCTAAGTTCCTTCCCGCAAAACCTGTTGA GAAGATGGGGGTGTTTCCCT
Downstream 100 bases:
>100_bases GGGGAATGTCCAGTATGTTGGCCTTGGAGAAAAAAACAATTGGCCGAGCTCAGCCGCTTCGATCCCTGGGCTTTACGCTG GTAGAAGTCCTGGCGGTGGT
Product: PddD domain-containing protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 375; Mature: 375
Protein sequence:
>375_residues MVFKSFRRRASRGFTLIELLVSLLIASIFLLATGMIVVETMRLDREETGRTQVQAELTQAMEYIQQDLAEALYIYNDTEQ PNGDGIPDVIQRLYTPGWIRQPAGAIPVVAFWKLEPIPQGCYAGNPTLQQIREGRARLPNQPPDGFPRDQNGRNADWETL LSRRGIYTLVVYYLRRNYNNAGNLADGSTTPWEGNARIERFELRPFARQGNNDCAGRSPFFVEDPDPFRDGFLAWPSEQA RARQIPIAGRTDGPRLTTLVSNIFSSREGSPQVAPACPQGYAFGGGRPNGVTFPELEDNQNDVGFYVCVRQSVGADRPQD VIINITATAMERANPGLFRRYIRNATSVDISEVSRYLLPMQTLVLARGVINRQLS
Sequences:
>Translated_375_residues MVFKSFRRRASRGFTLIELLVSLLIASIFLLATGMIVVETMRLDREETGRTQVQAELTQAMEYIQQDLAEALYIYNDTEQ PNGDGIPDVIQRLYTPGWIRQPAGAIPVVAFWKLEPIPQGCYAGNPTLQQIREGRARLPNQPPDGFPRDQNGRNADWETL LSRRGIYTLVVYYLRRNYNNAGNLADGSTTPWEGNARIERFELRPFARQGNNDCAGRSPFFVEDPDPFRDGFLAWPSEQA RARQIPIAGRTDGPRLTTLVSNIFSSREGSPQVAPACPQGYAFGGGRPNGVTFPELEDNQNDVGFYVCVRQSVGADRPQD VIINITATAMERANPGLFRRYIRNATSVDISEVSRYLLPMQTLVLARGVINRQLS >Mature_375_residues MVFKSFRRRASRGFTLIELLVSLLIASIFLLATGMIVVETMRLDREETGRTQVQAELTQAMEYIQQDLAEALYIYNDTEQ PNGDGIPDVIQRLYTPGWIRQPAGAIPVVAFWKLEPIPQGCYAGNPTLQQIREGRARLPNQPPDGFPRDQNGRNADWETL LSRRGIYTLVVYYLRRNYNNAGNLADGSTTPWEGNARIERFELRPFARQGNNDCAGRSPFFVEDPDPFRDGFLAWPSEQA RARQIPIAGRTDGPRLTTLVSNIFSSREGSPQVAPACPQGYAFGGGRPNGVTFPELEDNQNDVGFYVCVRQSVGADRPQD VIINITATAMERANPGLFRRYIRNATSVDISEVSRYLLPMQTLVLARGVINRQLS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42047; Mature: 42047
Theoretical pI: Translated: 7.88; Mature: 7.88
Prosite motif: PS00409 PROKAR_NTER_METHYL
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVFKSFRRRASRGFTLIELLVSLLIASIFLLATGMIVVETMRLDREETGRTQVQAELTQA CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCHHHHHHHHHHH MEYIQQDLAEALYIYNDTEQPNGDGIPDVIQRLYTPGWIRQPAGAIPVVAFWKLEPIPQG HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCC CYAGNPTLQQIREGRARLPNQPPDGFPRDQNGRNADWETLLSRRGIYTLVVYYLRRNYNN CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCC AGNLADGSTTPWEGNARIERFELRPFARQGNNDCAGRSPFFVEDPDPFRDGFLAWPSEQA CCCCCCCCCCCCCCCCCEEEEECCHHHHCCCCCCCCCCCEECCCCCHHHCCCCCCCCHHH RARQIPIAGRTDGPRLTTLVSNIFSSREGSPQVAPACPQGYAFGGGRPNGVTFPELEDNQ HHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC NDVGFYVCVRQSVGADRPQDVIINITATAMERANPGLFRRYIRNATSVDISEVSRYLLPM CCCEEEEEEEHHCCCCCCCCEEEEEEHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHH QTLVLARGVINRQLS HHHHHHHHHHHHCCC >Mature Secondary Structure MVFKSFRRRASRGFTLIELLVSLLIASIFLLATGMIVVETMRLDREETGRTQVQAELTQA CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCHHHHHHHHHHH MEYIQQDLAEALYIYNDTEQPNGDGIPDVIQRLYTPGWIRQPAGAIPVVAFWKLEPIPQG HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCC CYAGNPTLQQIREGRARLPNQPPDGFPRDQNGRNADWETLLSRRGIYTLVVYYLRRNYNN CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCC AGNLADGSTTPWEGNARIERFELRPFARQGNNDCAGRSPFFVEDPDPFRDGFLAWPSEQA CCCCCCCCCCCCCCCCCEEEEECCHHHHCCCCCCCCCCCEECCCCCHHHCCCCCCCCHHH RARQIPIAGRTDGPRLTTLVSNIFSSREGSPQVAPACPQGYAFGGGRPNGVTFPELEDNQ HHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC NDVGFYVCVRQSVGADRPQDVIINITATAMERANPGLFRRYIRNATSVDISEVSRYLLPM CCCEEEEEEEHHCCCCCCCCEEEEEEHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHH QTLVLARGVINRQLS HHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA