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The map label for this gene is xylR [H]

Identifier: 86361296

GI number: 86361296

Start: 635310

End: 636548

Strand: Direct

Name: xylR [H]

Synonym: RHE_PF00568

Alternate gene names: 86361296

Gene position: 635310-636548 (Clockwise)

Preceding gene: 86361295

Following gene: 86361297

Centisome position: 98.88

GC content: 64.41

Gene sequence:

>1239_bases
ATGAACCAGACGCTCGGCGCCAGACACTCCCCCGATCTGACGGGCGCCAATGTCGAAGATGCGGGCGAGCACAACCGGGC
CGTCGTCTTGCGCTGCATTCACCGTCAGGCGCCGATTTCGCGCGCCGAGATCGCCAGGCAAACCGGCTTAACCAAACCGG
CAATCGCCCGCATCGTCGACCGGCTGCTGGACGAGGGGCTGATCATGGAAGCCCGCCGGCGGCACGGGCTGAGGGGCCAG
CCTGCGATCGAGCTCGAGATCAATCCGGACGCTTATTATGCGATCGGCATCAATATCGACCGCGACCACCTGACGATCCT
GGCGGTCGACGCCGTCGGCAACGTGCGCGCCCGGGTGCATCACGAGAAGCGCTTCATCCTGCCGGCGGAATTCCTGCAGC
TGACATCAGATGCGATCTCGCATTTCCAGCGCAGCCGGCTGATTGATGACGCACGCCTTGCCGGCATTGGCCTTGCCATG
CCGGATTGGCTCGGCGAAATCTCGCTGCTCGGCAAGCCAGATGCCTATCAGGAATGGACTGATTTCGACGTGCGCGCCGC
ACTGGAGGGACTGACGCCGCATCCCGTCTTCACCGAAAACGAGGCCAATGCGGCAGCCCTTGCCGAGCTCAACTACGGCC
TCGGCGCGGAAAGCAGCAGCTTCTTTTATGTCGCCGTCAATGCCTGCCCGGGCGGCGGCCTCGTGCTCGACGGCAACGGC
CATCGCGGCGCCATGGGCCTCAGCGGCGAGATCGGCTGGCTTCCGATCGCAGACGGCCGCGACGGCGAGGCGCAGAAGGT
TCAGCTTCTCGGTGAGATCTTTTCGCTGTTCTTCCTCTATGATTTCCTCGCCCGGCACGGGATCAAAGTGAGCGTTCCCC
AGGATCTGCTGACGCTCGATGCACGCGGCAAGCGCCTCGTTTCGCAGTGGTTGAAGGAGATGAGCGCGCATCTGGCGGTC
GCCGTCAAACATATCGCCATGATCGTCGATCCCGACGCCGTGCTCGTCGGCGGCCGGCTGCCGATCCGCATCGTCGACGA
ATTGCTGCGTTATGTGCACGAACATCTCGACGCCGAGGACACGAACCTGCCCTCGCTCCATCGCGCCTCGATCGGCGAGG
ACGCCTCGGCCATGGGGGCGGCGGCCATGCCGATGGCGGCAGCCCTGATGCTCGCATCGGCTGACGTGGCGCAGCGCACG
CGCTCGCCGCTGAAATTCATGGATCGGCTGAACAGTTGA

Upstream 100 bases:

>100_bases
CTGTCGCTCCAGCGGTTGATCCTCGGCGCGATGACCAGCGGCGCGGTGAAGGGATGAGAGGGTCTGCTTCACTCTTCGCG
CGTGAGGAAGGACTGAACGC

Downstream 100 bases:

>100_bases
AACCGCCGCAAGGCCCCCGGATTTTGATGAAGATCGGAGGATATGATGAAGATCGGCTTCTATACCTCGACATTCAATGA
CCGTCCGCTGGAGGAAGTGG

Product: transcriptional regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 412

Protein sequence:

>412_residues
MNQTLGARHSPDLTGANVEDAGEHNRAVVLRCIHRQAPISRAEIARQTGLTKPAIARIVDRLLDEGLIMEARRRHGLRGQ
PAIELEINPDAYYAIGINIDRDHLTILAVDAVGNVRARVHHEKRFILPAEFLQLTSDAISHFQRSRLIDDARLAGIGLAM
PDWLGEISLLGKPDAYQEWTDFDVRAALEGLTPHPVFTENEANAAALAELNYGLGAESSSFFYVAVNACPGGGLVLDGNG
HRGAMGLSGEIGWLPIADGRDGEAQKVQLLGEIFSLFFLYDFLARHGIKVSVPQDLLTLDARGKRLVSQWLKEMSAHLAV
AVKHIAMIVDPDAVLVGGRLPIRIVDELLRYVHEHLDAEDTNLPSLHRASIGEDASAMGAAAMPMAAALMLASADVAQRT
RSPLKFMDRLNS

Sequences:

>Translated_412_residues
MNQTLGARHSPDLTGANVEDAGEHNRAVVLRCIHRQAPISRAEIARQTGLTKPAIARIVDRLLDEGLIMEARRRHGLRGQ
PAIELEINPDAYYAIGINIDRDHLTILAVDAVGNVRARVHHEKRFILPAEFLQLTSDAISHFQRSRLIDDARLAGIGLAM
PDWLGEISLLGKPDAYQEWTDFDVRAALEGLTPHPVFTENEANAAALAELNYGLGAESSSFFYVAVNACPGGGLVLDGNG
HRGAMGLSGEIGWLPIADGRDGEAQKVQLLGEIFSLFFLYDFLARHGIKVSVPQDLLTLDARGKRLVSQWLKEMSAHLAV
AVKHIAMIVDPDAVLVGGRLPIRIVDELLRYVHEHLDAEDTNLPSLHRASIGEDASAMGAAAMPMAAALMLASADVAQRT
RSPLKFMDRLNS
>Mature_412_residues
MNQTLGARHSPDLTGANVEDAGEHNRAVVLRCIHRQAPISRAEIARQTGLTKPAIARIVDRLLDEGLIMEARRRHGLRGQ
PAIELEINPDAYYAIGINIDRDHLTILAVDAVGNVRARVHHEKRFILPAEFLQLTSDAISHFQRSRLIDDARLAGIGLAM
PDWLGEISLLGKPDAYQEWTDFDVRAALEGLTPHPVFTENEANAAALAELNYGLGAESSSFFYVAVNACPGGGLVLDGNG
HRGAMGLSGEIGWLPIADGRDGEAQKVQLLGEIFSLFFLYDFLARHGIKVSVPQDLLTLDARGKRLVSQWLKEMSAHLAV
AVKHIAMIVDPDAVLVGGRLPIRIVDELLRYVHEHLDAEDTNLPSLHRASIGEDASAMGAAAMPMAAALMLASADVAQRT
RSPLKFMDRLNS

Specific function: Transcriptional repressor of xylose-utilizing enzymes [H]

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Escherichia coli, GI1786891, Length=388, Percent_Identity=24.7422680412371, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787878, Length=340, Percent_Identity=21.7647058823529, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000600
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 44868; Mature: 44868

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQTLGARHSPDLTGANVEDAGEHNRAVVLRCIHRQAPISRAEIARQTGLTKPAIARIVD
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHH
RLLDEGLIMEARRRHGLRGQPAIELEINPDAYYAIGINIDRDHLTILAVDAVGNVRARVH
HHHCCCHHHHHHHHCCCCCCCEEEEEECCCEEEEEEEEECCCCEEEEEEECCCCHHHHEE
HEKRFILPAEFLQLTSDAISHFQRSRLIDDARLAGIGLAMPDWLGEISLLGKPDAYQEWT
CCCEEECHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHCCEEECCCCCCCCCCC
DFDVRAALEGLTPHPVFTENEANAAALAELNYGLGAESSSFFYVAVNACPGGGLVLDGNG
CCHHHHHHCCCCCCCEEECCCCCHHHHHHHCCCCCCCCCCEEEEEEEECCCCCEEECCCC
HRGAMGLSGEIGWLPIADGRDGEAQKVQLLGEIFSLFFLYDFLARHGIKVSVPQDLLTLD
CCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHC
ARGKRLVSQWLKEMSAHLAVAVKHIAMIVDPDAVLVGGRLPIRIVDELLRYVHEHLDAED
CCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEECCCCCHHHHHHHHHHHHHHCCCCC
TNLPSLHRASIGEDASAMGAAAMPMAAALMLASADVAQRTRSPLKFMDRLNS
CCCCCHHHHCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC
>Mature Secondary Structure
MNQTLGARHSPDLTGANVEDAGEHNRAVVLRCIHRQAPISRAEIARQTGLTKPAIARIVD
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHH
RLLDEGLIMEARRRHGLRGQPAIELEINPDAYYAIGINIDRDHLTILAVDAVGNVRARVH
HHHCCCHHHHHHHHCCCCCCCEEEEEECCCEEEEEEEEECCCCEEEEEEECCCCHHHHEE
HEKRFILPAEFLQLTSDAISHFQRSRLIDDARLAGIGLAMPDWLGEISLLGKPDAYQEWT
CCCEEECHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHCCEEECCCCCCCCCCC
DFDVRAALEGLTPHPVFTENEANAAALAELNYGLGAESSSFFYVAVNACPGGGLVLDGNG
CCHHHHHHCCCCCCCEEECCCCCHHHHHHHCCCCCCCCCCEEEEEEEECCCCCEEECCCC
HRGAMGLSGEIGWLPIADGRDGEAQKVQLLGEIFSLFFLYDFLARHGIKVSVPQDLLTLD
CCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHC
ARGKRLVSQWLKEMSAHLAVAVKHIAMIVDPDAVLVGGRLPIRIVDELLRYVHEHLDAED
CCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEECCCCCHHHHHHHHHHHHHHCCCCC
TNLPSLHRASIGEDASAMGAAAMPMAAALMLASADVAQRTRSPLKFMDRLNS
CCCCCHHHHCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2544559 [H]