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The map label for this gene is nodW [H]

Identifier: 86361262

GI number: 86361262

Start: 598951

End: 599604

Strand: Direct

Name: nodW [H]

Synonym: RHE_PF00533

Alternate gene names: 86361262

Gene position: 598951-599604 (Clockwise)

Preceding gene: 86361260

Following gene: 86361263

Centisome position: 93.22

GC content: 57.19

Gene sequence:

>654_bases
ATGTATAGTGGCAATCTACTTCAGTTCCCCGCAAAAAAGATAGCACCGCCGGCGGAAGATGCACCGGTCGTATGCCTCGT
GAGCAATGATCTGGTATTCCATCGATCGCTGGATGAAGAGATCCAATCGCTCGGTTCGCGGCCGGCCAGCTTCAGTTCTG
CACGGGATTTTCTCACCCATGCTCGGGATGCGCGCTTCGCGTGCGTCATCATCGACAATACAGTGCCCGATCTTGACGTA
GACGTCCTCACCCTCCTGATTTGCCTGCAGGCAGTTCGTCACCCCGTGATCGTGCTGACGTCCGAGGGCGATTCTCAGGT
GACGTTGACTGCCACGCGATATCCGGTGACGTTTCTGCCGAGACCTTTCGGCACAGACAATCTCGTCCAACTGATCCGCT
CTTCCGTTGAGGCGACCATCTCGATCAGCCAGCTGGATTGCCGTTACCAGAGCCTTTCGGCGCGCGAACGGCAGGTCATG
CAGTTCGTCGTCGAAGGCCTGCTGAACAAGCAAGTCGCATATAAATTGAATATCAGCGTGATCACGGTAAAGGCCCACCG
TGGACAGGTAATGAGGAAGATGCGGGCCCGCTCGCTGCCGGAGCTGGTGAATATGGCCGCGAAGATCGAACCGGGCCTCA
GCGCCGCATGCTGA

Upstream 100 bases:

>100_bases
TTCGTGGTCATCCCGGCTTAGAACGTTGACGCAGGTTCAGCGCCGCATGGGCGCAGTTGCAACCCTGGACCGCTAAGATC
ACAAAGAGAAGGAGGATGGC

Downstream 100 bases:

>100_bases
ACGCCGCGCACTGACCGTTCGCGACAGTTAAGCCAATACTTAAGTGTAGTTATAAGTGCGCGCCGATCAGTATAGTCTCC
TCTACGTCGCCTCCCTCGAT

Product: two-component response regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MYSGNLLQFPAKKIAPPAEDAPVVCLVSNDLVFHRSLDEEIQSLGSRPASFSSARDFLTHARDARFACVIIDNTVPDLDV
DVLTLLICLQAVRHPVIVLTSEGDSQVTLTATRYPVTFLPRPFGTDNLVQLIRSSVEATISISQLDCRYQSLSARERQVM
QFVVEGLLNKQVAYKLNISVITVKAHRGQVMRKMRARSLPELVNMAAKIEPGLSAAC

Sequences:

>Translated_217_residues
MYSGNLLQFPAKKIAPPAEDAPVVCLVSNDLVFHRSLDEEIQSLGSRPASFSSARDFLTHARDARFACVIIDNTVPDLDV
DVLTLLICLQAVRHPVIVLTSEGDSQVTLTATRYPVTFLPRPFGTDNLVQLIRSSVEATISISQLDCRYQSLSARERQVM
QFVVEGLLNKQVAYKLNISVITVKAHRGQVMRKMRARSLPELVNMAAKIEPGLSAAC
>Mature_217_residues
MYSGNLLQFPAKKIAPPAEDAPVVCLVSNDLVFHRSLDEEIQSLGSRPASFSSARDFLTHARDARFACVIIDNTVPDLDV
DVLTLLICLQAVRHPVIVLTSEGDSQVTLTATRYPVTFLPRPFGTDNLVQLIRSSVEATISISQLDCRYQSLSARERQVM
QFVVEGLLNKQVAYKLNISVITVKAHRGQVMRKMRARSLPELVNMAAKIEPGLSAAC

Specific function: Member of the two-component regulatory system nodV/nodW probably involved in the regulation of the transcription of genes involved in the nodulation process [H]

COG id: COG4566

COG function: function code T; Response regulator

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR011990
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23936; Mature: 23936

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYSGNLLQFPAKKIAPPAEDAPVVCLVSNDLVFHRSLDEEIQSLGSRPASFSSARDFLTH
CCCCCEEECCHHHCCCCCCCCCEEEEEECCEEEECCHHHHHHHHCCCCCCHHHHHHHHHH
ARDARFACVIIDNTVPDLDVDVLTLLICLQAVRHPVIVLTSEGDSQVTLTATRYPVTFLP
CCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEEEECCEEECC
RPFGTDNLVQLIRSSVEATISISQLDCRYQSLSARERQVMQFVVEGLLNKQVAYKLNISV
CCCCCHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE
ITVKAHRGQVMRKMRARSLPELVNMAAKIEPGLSAAC
EEEECHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MYSGNLLQFPAKKIAPPAEDAPVVCLVSNDLVFHRSLDEEIQSLGSRPASFSSARDFLTH
CCCCCEEECCHHHCCCCCCCCCEEEEEECCEEEECCHHHHHHHHCCCCCCHHHHHHHHHH
ARDARFACVIIDNTVPDLDVDVLTLLICLQAVRHPVIVLTSEGDSQVTLTATRYPVTFLP
CCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEEEECCEEECC
RPFGTDNLVQLIRSSVEATISISQLDCRYQSLSARERQVMQFVVEGLLNKQVAYKLNISV
CCCCCHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE
ITVKAHRGQVMRKMRARSLPELVNMAAKIEPGLSAAC
EEEECHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2320582; 11157954; 12597275 [H]