| Definition | Rhizobium etli CFN 42 plasmid p42f, complete sequence. |
|---|---|
| Accession | NC_007766 |
| Length | 642,517 |
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The map label for this gene is phoB [C]
Identifier: 86361261
GI number: 86361261
Start: 595866
End: 598763
Strand: Reverse
Name: phoB [C]
Synonym: RHE_PF00532
Alternate gene names: 86361261
Gene position: 598763-595866 (Counterclockwise)
Preceding gene: 86361264
Following gene: 86361253
Centisome position: 93.19
GC content: 61.46
Gene sequence:
>2898_bases TTGAGGTCAGCGGTCCCTGAATTTCGCGGCTTTGGCAAGAGAGATCGGATTAGCTTGGGACAGATAGAACGAAATCTATT CGAATTCTCGGGCTGGGAACTCGATCTTGGGAAGCGGGAACTCCGTGCTCTCGGGGCGCCGGTCCCTTTGGGCAGCCGCG CCTTCGATATCCTGGAAGTGCTGGCGGCAGCTTCGGGAGAGTCCGTCACCAAAGACGATCTCATGCGACGCGTCTGGCCT GGCCTTGTCGTAGAAGACAACACGATCCAGGTCCATATATCGGCAATCCGGAAGGCACTGGGAAAAGACCGGGATCTGCT GAAGACGATCTCGGGCCGAGGGTATCGACTGATCGGCGACTGGAAATCCGATCGTCCGTCTGCCGCGGCGCAGATTGCGA CAACAGGCACGCCGTCACTGGAGATCCAGCCTGTCTCGAACATTCCGGCACTCACCTCCGAACTGGTCGGGCGCGAGAGC GCCCTGCGCAGACTTCTGACGCTGACCTCGGCATATCGTGTCGTCACGCTGACCGGTCCTGGCGGCATCGGCAAGACAGT GCTCGCGTCTGAATTGGCGCGTCATCTGCTGCCGCAACTTGGTGGCGATGCATTCTTCGTGGAGCTCGTCTCGCTGGCGG AGCCTGGGCTTGTTCCGACGACGGTCGCCCAAGTTCTCGATCTGAAGCTTCAAAGCGATCAAATATCCGCCGAGGTGGTG GCGCGCGCCGTCGGCGCGCGCAGGGTTCTGCTTCTCATCGACAACTGCGAGCACGTCATTGACGCGGCTGCCGCCATGAT CGACACGATCCTGCGAATATGCCCGAATGTGACGGTTATTGCGACGAGCCGAGAATCCCTGCGCATAGAGGGAGAATTCG CCTACCGTGTGCCGCCGTTGGAGGTGCCGGGCAGCGGAGAGGCGGTCAGTGCCGCAGAACACAGCGCCATCCACCTGTTC GTTGCGCGCACGCGGGCGCTTCAATGGGATTTCGAGCCGGACCAGCAGAAGCTTTCAACGATCGCCGATATCTGCCGGCA TCTCGACGGCATCCCGCTCGCCATCGAACTGGCGGCGGCCCGCGCCGCGACCCTTGGAATACAGCAGATCGCCGGGCGTC TCGACGACCGGTTCGTTCTGCTCACGGGCGGTCGCCGCACCGCCTTGCCGCGTCATCAAACGCTGCGAGCAGCTTTGGAC TGGAGCTATCAGCTCCTGCCGGAGTCCGAGCGCCAGCTATTGTGCAGGCTGGCGGCGTTTCCCGGAGGCTTCACTTTGGA TGCTGCCGTGGCAGTGAGCGGTGAAGGGGATGCGGAAACGGCGCTGGCCATATCCAACCTCGTCAGTAAATCCCTGATCA CATTCGACGGAGCGGAAAATGCACCGCGCTGGCGTCTGCTGGAGACGGTGCGCGTCTATTCGCTCGAGAAGCTCGGCGAT GGCGAAGATTTTCGCCGGACGATGTGCAAAATTGCGAAGCATTTCCTCAAGTTTTTCAAACCCTTTTCGGAACGGCGCAC GCTTTCGGCGGCCATCGAGAACATCACGCACTATCGACGCGAAATCGACAATTTGCGAGCGGCCCTGCGATGGGCGCTGT CCGAGGGCGGCAAGGGTGCCCTTGGCGCCAAGCTCGCTGCGACATCGAGTGACTTCTGGACGGCGATCTCGCTGGTTTCA GAAGCTGGCGACTGGGCCGAGCGTGCTCTCGACCGTCTCGGCGAGGAGAAAGGAAGCCGCACCGAAATGGTCTTGCGCTG CGCGCTCGGCTACGCCCTCATTTATACGCAAGGGATGAATCCGCGCGGAAAGGAGGTGCTCATCGGCGCGCTGCATCTGG CGAGAACCTTAAACGATCCAGACTACCGCCAGCGCGTCACCTGTGGCTTGTGGCTCTTTTCCGCGAGATCGGCGCGGCTG GACGACGCGCTGACATTCGCGCAGGAATACGAAGCCACGCTCGACGAGGGGGACCTGCACGGACGCACCACCGCCTCATG GCTTGTCGGTATCCCGCAAACCTATCAGGCGCGCCACCGGGAGGCCGGCGACCGGTTGAGTTGGGCAGCGGCGAACTATC CGGTCGAACACCGCAAGACCGATCTGCTGAGGCTGGAAGCGGATGTCCGCACCTCCTCCTTGTCCCATAACACCGTCAAC CTCATCGCGCGCGGCCTGCTGGAGCAGGCGGCGGAAACGGCAGAGCAGGCAATTCAAGAGGCCCGGGAAACCGGGCAGCC GTTTGTCCTGTGCGTCGCGCTCGCCTGGTCCGCCTCGTTCGTCGCGCTCAGCATCGACGACTTGGACCGGGCGAAAACGT GGGGCGAAGAGCTGTCGCGGCAGGCATCGCAACATGGCCTTCGGCCCTTTCATGCCGTTGGCCTGAGCGTCAGGGGAGCG ATTGCGCGCAGGCTCCGCAATGCCTACGCCGGCGTCGAAGATCTGCGAGCCGGCATCGCGGAGATGCGCGACGCGTCATA TCTTTTGTTCTATCCCACCTTCCTTTGCGAACTCGCTGCGGCGCTGCAAGCCTTGGGTCGGTTCAATGAGGCATTGGGCG AGCTCGGCCAGGCATTGTCATTTTCGCGTGAGCACGGCTACCACTGGATGATCCCGGAAATCTTGAGGAGAAAGGGTGAG GTTCTCAGGGATCAGGACTTGAGAACGCCTTTGGAGATAGACGACCTTTTTCAGAACGCCATGATGGAAGCCGCCCGGCA GGAGGCGCTGTACTGGCAATTGACCTCGGCCATCAGCCTCATAAATTTCCGCAAGGCGGCGGGATACCAAGGCGACGCGA AGAGTGTGCTCTCTTCCATCTATCAACAATTCACGGAAGGTCTTTCGAGCCCCTTGCTGCTCCGCGCCAGGGCGATGATC GAAGCGTCGCAAGATTGA
Upstream 100 bases:
>100_bases GGATGACCACGAACGCGACTTAAGTCGCTTGAGCGAATCTGAAATATCCTGAAATATATCTGCTTAGGCAGCAGGCATTG TTTTACGCGCAGGCGCGTTC
Downstream 100 bases:
>100_bases GCGCAGGTCTCTCAACGCTCCGCCGAGTTCCTGGGCGAGCCCGTTGAGAAGCCCTTCAGGCTCACGGATGTAGCAGAGCC GATAAACGTCCCAATCGACG
Product: LuxR family transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 965; Mature: 965
Protein sequence:
>965_residues MRSAVPEFRGFGKRDRISLGQIERNLFEFSGWELDLGKRELRALGAPVPLGSRAFDILEVLAAASGESVTKDDLMRRVWP GLVVEDNTIQVHISAIRKALGKDRDLLKTISGRGYRLIGDWKSDRPSAAAQIATTGTPSLEIQPVSNIPALTSELVGRES ALRRLLTLTSAYRVVTLTGPGGIGKTVLASELARHLLPQLGGDAFFVELVSLAEPGLVPTTVAQVLDLKLQSDQISAEVV ARAVGARRVLLLIDNCEHVIDAAAAMIDTILRICPNVTVIATSRESLRIEGEFAYRVPPLEVPGSGEAVSAAEHSAIHLF VARTRALQWDFEPDQQKLSTIADICRHLDGIPLAIELAAARAATLGIQQIAGRLDDRFVLLTGGRRTALPRHQTLRAALD WSYQLLPESERQLLCRLAAFPGGFTLDAAVAVSGEGDAETALAISNLVSKSLITFDGAENAPRWRLLETVRVYSLEKLGD GEDFRRTMCKIAKHFLKFFKPFSERRTLSAAIENITHYRREIDNLRAALRWALSEGGKGALGAKLAATSSDFWTAISLVS EAGDWAERALDRLGEEKGSRTEMVLRCALGYALIYTQGMNPRGKEVLIGALHLARTLNDPDYRQRVTCGLWLFSARSARL DDALTFAQEYEATLDEGDLHGRTTASWLVGIPQTYQARHREAGDRLSWAAANYPVEHRKTDLLRLEADVRTSSLSHNTVN LIARGLLEQAAETAEQAIQEARETGQPFVLCVALAWSASFVALSIDDLDRAKTWGEELSRQASQHGLRPFHAVGLSVRGA IARRLRNAYAGVEDLRAGIAEMRDASYLLFYPTFLCELAAALQALGRFNEALGELGQALSFSREHGYHWMIPEILRRKGE VLRDQDLRTPLEIDDLFQNAMMEAARQEALYWQLTSAISLINFRKAAGYQGDAKSVLSSIYQQFTEGLSSPLLLRARAMI EASQD
Sequences:
>Translated_965_residues MRSAVPEFRGFGKRDRISLGQIERNLFEFSGWELDLGKRELRALGAPVPLGSRAFDILEVLAAASGESVTKDDLMRRVWP GLVVEDNTIQVHISAIRKALGKDRDLLKTISGRGYRLIGDWKSDRPSAAAQIATTGTPSLEIQPVSNIPALTSELVGRES ALRRLLTLTSAYRVVTLTGPGGIGKTVLASELARHLLPQLGGDAFFVELVSLAEPGLVPTTVAQVLDLKLQSDQISAEVV ARAVGARRVLLLIDNCEHVIDAAAAMIDTILRICPNVTVIATSRESLRIEGEFAYRVPPLEVPGSGEAVSAAEHSAIHLF VARTRALQWDFEPDQQKLSTIADICRHLDGIPLAIELAAARAATLGIQQIAGRLDDRFVLLTGGRRTALPRHQTLRAALD WSYQLLPESERQLLCRLAAFPGGFTLDAAVAVSGEGDAETALAISNLVSKSLITFDGAENAPRWRLLETVRVYSLEKLGD GEDFRRTMCKIAKHFLKFFKPFSERRTLSAAIENITHYRREIDNLRAALRWALSEGGKGALGAKLAATSSDFWTAISLVS EAGDWAERALDRLGEEKGSRTEMVLRCALGYALIYTQGMNPRGKEVLIGALHLARTLNDPDYRQRVTCGLWLFSARSARL DDALTFAQEYEATLDEGDLHGRTTASWLVGIPQTYQARHREAGDRLSWAAANYPVEHRKTDLLRLEADVRTSSLSHNTVN LIARGLLEQAAETAEQAIQEARETGQPFVLCVALAWSASFVALSIDDLDRAKTWGEELSRQASQHGLRPFHAVGLSVRGA IARRLRNAYAGVEDLRAGIAEMRDASYLLFYPTFLCELAAALQALGRFNEALGELGQALSFSREHGYHWMIPEILRRKGE VLRDQDLRTPLEIDDLFQNAMMEAARQEALYWQLTSAISLINFRKAAGYQGDAKSVLSSIYQQFTEGLSSPLLLRARAMI EASQD >Mature_965_residues MRSAVPEFRGFGKRDRISLGQIERNLFEFSGWELDLGKRELRALGAPVPLGSRAFDILEVLAAASGESVTKDDLMRRVWP GLVVEDNTIQVHISAIRKALGKDRDLLKTISGRGYRLIGDWKSDRPSAAAQIATTGTPSLEIQPVSNIPALTSELVGRES ALRRLLTLTSAYRVVTLTGPGGIGKTVLASELARHLLPQLGGDAFFVELVSLAEPGLVPTTVAQVLDLKLQSDQISAEVV ARAVGARRVLLLIDNCEHVIDAAAAMIDTILRICPNVTVIATSRESLRIEGEFAYRVPPLEVPGSGEAVSAAEHSAIHLF VARTRALQWDFEPDQQKLSTIADICRHLDGIPLAIELAAARAATLGIQQIAGRLDDRFVLLTGGRRTALPRHQTLRAALD WSYQLLPESERQLLCRLAAFPGGFTLDAAVAVSGEGDAETALAISNLVSKSLITFDGAENAPRWRLLETVRVYSLEKLGD GEDFRRTMCKIAKHFLKFFKPFSERRTLSAAIENITHYRREIDNLRAALRWALSEGGKGALGAKLAATSSDFWTAISLVS EAGDWAERALDRLGEEKGSRTEMVLRCALGYALIYTQGMNPRGKEVLIGALHLARTLNDPDYRQRVTCGLWLFSARSARL DDALTFAQEYEATLDEGDLHGRTTASWLVGIPQTYQARHREAGDRLSWAAANYPVEHRKTDLLRLEADVRTSSLSHNTVN LIARGLLEQAAETAEQAIQEARETGQPFVLCVALAWSASFVALSIDDLDRAKTWGEELSRQASQHGLRPFHAVGLSVRGA IARRLRNAYAGVEDLRAGIAEMRDASYLLFYPTFLCELAAALQALGRFNEALGELGQALSFSREHGYHWMIPEILRRKGE VLRDQDLRTPLEIDDLFQNAMMEAARQEALYWQLTSAISLINFRKAAGYQGDAKSVLSSIYQQFTEGLSSPLLLRARAMI EASQD
Specific function: This Protein Is A Positive Regulator For The Phosphate Regulon. Transcription Of This Operon Is Positively Regulated By Phob And Phor When Phosphate Is Limited. [C]
COG id: COG3903
COG function: function code R; Predicted ATPase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000767 - InterPro: IPR016032 - InterPro: IPR011990 - InterPro: IPR000792 - InterPro: IPR011991 [H]
Pfam domain/function: PF00196 GerE [H]
EC number: NA
Molecular weight: Translated: 106167; Mature: 106167
Theoretical pI: Translated: 6.70; Mature: 6.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRSAVPEFRGFGKRDRISLGQIERNLFEFSGWELDLGKRELRALGAPVPLGSRAFDILEV CCCCCCHHHCCCCCCCCHHHHHHHHHHHCCCCEECCCHHHHHHCCCCCCCCCHHHHHHHH LAAASGESVTKDDLMRRVWPGLVVEDNTIQVHISAIRKALGKDRDLLKTISGRGYRLIGD HHHCCCCCCCHHHHHHHHCCCEEEECCEEEEEHHHHHHHHCCCHHHHHHHCCCCEEEEEC WKSDRPSAAAQIATTGTPSLEIQPVSNIPALTSELVGRESALRRLLTLTSAYRVVTLTGP CCCCCCCHHHEEEECCCCCEEEEECCCCCHHHHHHHCHHHHHHHHHHHHCCEEEEEEECC GGIGKTVLASELARHLLPQLGGDAFFVELVSLAEPGLVPTTVAQVLDLKLQSDQISAEVV CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHH ARAVGARRVLLLIDNCEHVIDAAAAMIDTILRICPNVTVIATSRESLRIEGEFAYRVPPL HHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEECEEEEECCCC EVPGSGEAVSAAEHSAIHLFVARTRALQWDFEPDQQKLSTIADICRHLDGIPLAIELAAA CCCCCCCCCCCCCCCCEEEEEEHHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEHHHHH RAATLGIQQIAGRLDDRFVLLTGGRRTALPRHQTLRAALDWSYQLLPESERQLLCRLAAF HHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCEECCCHHHHHHHHHHHC PGGFTLDAAVAVSGEGDAETALAISNLVSKSLITFDGAENAPRWRLLETVRVYSLEKLGD CCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHCCC GEDFRRTMCKIAKHFLKFFKPFSERRTLSAAIENITHYRREIDNLRAALRWALSEGGKGA CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC LGAKLAATSSDFWTAISLVSEAGDWAERALDRLGEEKGSRTEMVLRCALGYALIYTQGMN CCCEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEECCCC PRGKEVLIGALHLARTLNDPDYRQRVTCGLWLFSARSARLDDALTFAQEYEATLDEGDLH CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCC GRTTASWLVGIPQTYQARHREAGDRLSWAAANYPVEHRKTDLLRLEADVRTSSLSHNTVN CCCHHHHHCCCCHHHHHHHHHCCCCCEEHHCCCCHHHCCCHHEEEEHHHHHHCCCCHHHH LIARGLLEQAAETAEQAIQEARETGQPFVLCVALAWSASFVALSIDDLDRAKTWGEELSR HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHCCCEEEEEHHHHHHHHHHHHHHHH QASQHGLRPFHAVGLSVRGAIARRLRNAYAGVEDLRAGIAEMRDASYLLFYPTFLCELAA HHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEHHHHHHHHHHH ALQALGRFNEALGELGQALSFSREHGYHWMIPEILRRKGEVLRDQDLRTPLEIDDLFQNA HHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH MMEAARQEALYWQLTSAISLINFRKAAGYQGDAKSVLSSIYQQFTEGLSSPLLLRARAMI HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH EASQD HCCCC >Mature Secondary Structure MRSAVPEFRGFGKRDRISLGQIERNLFEFSGWELDLGKRELRALGAPVPLGSRAFDILEV CCCCCCHHHCCCCCCCCHHHHHHHHHHHCCCCEECCCHHHHHHCCCCCCCCCHHHHHHHH LAAASGESVTKDDLMRRVWPGLVVEDNTIQVHISAIRKALGKDRDLLKTISGRGYRLIGD HHHCCCCCCCHHHHHHHHCCCEEEECCEEEEEHHHHHHHHCCCHHHHHHHCCCCEEEEEC WKSDRPSAAAQIATTGTPSLEIQPVSNIPALTSELVGRESALRRLLTLTSAYRVVTLTGP CCCCCCCHHHEEEECCCCCEEEEECCCCCHHHHHHHCHHHHHHHHHHHHCCEEEEEEECC GGIGKTVLASELARHLLPQLGGDAFFVELVSLAEPGLVPTTVAQVLDLKLQSDQISAEVV CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHH ARAVGARRVLLLIDNCEHVIDAAAAMIDTILRICPNVTVIATSRESLRIEGEFAYRVPPL HHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEECEEEEECCCC EVPGSGEAVSAAEHSAIHLFVARTRALQWDFEPDQQKLSTIADICRHLDGIPLAIELAAA CCCCCCCCCCCCCCCCEEEEEEHHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEHHHHH RAATLGIQQIAGRLDDRFVLLTGGRRTALPRHQTLRAALDWSYQLLPESERQLLCRLAAF HHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCEECCCHHHHHHHHHHHC PGGFTLDAAVAVSGEGDAETALAISNLVSKSLITFDGAENAPRWRLLETVRVYSLEKLGD CCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHCCC GEDFRRTMCKIAKHFLKFFKPFSERRTLSAAIENITHYRREIDNLRAALRWALSEGGKGA CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC LGAKLAATSSDFWTAISLVSEAGDWAERALDRLGEEKGSRTEMVLRCALGYALIYTQGMN CCCEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEECCCC PRGKEVLIGALHLARTLNDPDYRQRVTCGLWLFSARSARLDDALTFAQEYEATLDEGDLH CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCC GRTTASWLVGIPQTYQARHREAGDRLSWAAANYPVEHRKTDLLRLEADVRTSSLSHNTVN CCCHHHHHCCCCHHHHHHHHHCCCCCEEHHCCCCHHHCCCHHEEEEHHHHHHCCCCHHHH LIARGLLEQAAETAEQAIQEARETGQPFVLCVALAWSASFVALSIDDLDRAKTWGEELSR HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHCCCEEEEEHHHHHHHHHHHHHHHH QASQHGLRPFHAVGLSVRGAIARRLRNAYAGVEDLRAGIAEMRDASYLLFYPTFLCELAA HHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEHHHHHHHHHHH ALQALGRFNEALGELGQALSFSREHGYHWMIPEILRRKGEVLRDQDLRTPLEIDDLFQNA HHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH MMEAARQEALYWQLTSAISLINFRKAAGYQGDAKSVLSSIYQQFTEGLSSPLLLRARAMI HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH EASQD HCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]