Click here to switch to the map view.

The map label for this gene is dadA

Identifier: 86361166

GI number: 86361166

Start: 488844

End: 490112

Strand: Reverse

Name: dadA

Synonym: RHE_PF00436

Alternate gene names: 86361166

Gene position: 490112-488844 (Counterclockwise)

Preceding gene: 86361167

Following gene: 86361165

Centisome position: 76.28

GC content: 62.96

Gene sequence:

>1269_bases
ATGAAAGTCATTGTTCTGGGTGCCGGCATCGTCGGCGTCACATCCGCCTATCAGCTGGCCAAATCAGGTCATGAGGTCAC
CGTCGTCGACCGGCAATCGGGGCCGGCGCTGGAGACGAGCTTTGCCAATGCCGGCGAAGTCTCCTTCGGCTATTGCTCGC
CGTGGGCGGCACCCGGCATTCCGATGAAGGCCATGAAATGGCTGTTCATGAAACATGCGCCGCTCATCCTGCGCCCGAAA
TTGGACATGGCCATGCTCTCCTGGATGGCGAGGATGCTGTCCAACTGCACCTCCGAGCGCTATGCAATCAACAAGAGCCG
CATGCTGCGCCTTGCCGATTATAGCCGCATCGCGCTCGCCGAGCTTCGCGCCGAAACCGGCATCGCCTATGACGAACGCA
TGCAGGGAACCCTGCAGCTGTTCCGCACGCAGCAGCAGCTCGATGCCTCGGCGAAAGACGTCAAGGCGCTCGCCGCTGAC
GGCATTCCCTATGAGGTGCTGGACCGGGACGGCTGCATCCGGGTCGAACCGGCGCTGAAGCACGTGCGCGACAAGATTGT
CGGCGGCCTTCTGACGCCGAAAGACGAGACCGGTGACTGTTTCAAATTCACCAATGCGCTGGCCGTCAAAGCCGATGCGC
TTGGCGTCCGCTTCGCCTATGGGACGACGATCAAGGCGCTGGATGTCGAAGGAGGCCGCGTTCGCGGGATTGTCACCGAC
CGCGATCCCGATCGCGAGCGCGAACGCATGGACGCGGATGCCGTGGTGGTTGCCCTCGGCAGCTATTCGCCGCTGCTGCT
CAAGCCCTTTGGAATCAGCCTGCCGGTCTATCCGGTCAAGGGCTACTCCCTCACCATCCCGATCACCGATGCGTCGCGCG
CGCCGGAATCGACCGTCATGGACGAAACCTACAAAATTGCGATCACCCGGCTCGGCGACCGCATCCGCGTCGGCGGCATG
GCAGAGATATCAGGCTATACCAATGATCTCGGGCTCGCTCGCCGCAGCACGCTCGAACATTCCGTCACCGATCTCTTCCC
CGGCGGCGATGTGTCCAAGGCCTCCTTCTGGTCCGGCCTGCGGCCGATGACACCGGATGGAACGCCGGTCATCGGCCCGA
CGAAGATCGGCGGCCTCTTCCTCAATACCGGTCACGGCACCCTTGGCTGGACCATGAGCACGGGGTCGGCAAGGCTCATC
AGCGACCTCGTCAGCGCCCGTACCCCTGAGATCGATTCGCGGGATCTTGCGGTCAGCCGCTACGCGTGA

Upstream 100 bases:

>100_bases
CGATGCCGGAACGATATCTTACGAAATACTAACCGGTTTGGGCGATCGTTACGACAGGCACTATTGCTGAGAGCCGGCCG
GCATTGTTCTTGAGGAAATC

Downstream 100 bases:

>100_bases
AATCCCGGCGAAGTAGCGCAAAGAAAGAAGAGTATTATCCCAGAGAATAACTATACTCGTGGGAAATTATCGTGAGGTGG
TGAATGTCCGTTGGTTCCGA

Product: D-amino acid dehydrogenase small subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 422

Protein sequence:

>422_residues
MKVIVLGAGIVGVTSAYQLAKSGHEVTVVDRQSGPALETSFANAGEVSFGYCSPWAAPGIPMKAMKWLFMKHAPLILRPK
LDMAMLSWMARMLSNCTSERYAINKSRMLRLADYSRIALAELRAETGIAYDERMQGTLQLFRTQQQLDASAKDVKALAAD
GIPYEVLDRDGCIRVEPALKHVRDKIVGGLLTPKDETGDCFKFTNALAVKADALGVRFAYGTTIKALDVEGGRVRGIVTD
RDPDRERERMDADAVVVALGSYSPLLLKPFGISLPVYPVKGYSLTIPITDASRAPESTVMDETYKIAITRLGDRIRVGGM
AEISGYTNDLGLARRSTLEHSVTDLFPGGDVSKASFWSGLRPMTPDGTPVIGPTKIGGLFLNTGHGTLGWTMSTGSARLI
SDLVSARTPEIDSRDLAVSRYA

Sequences:

>Translated_422_residues
MKVIVLGAGIVGVTSAYQLAKSGHEVTVVDRQSGPALETSFANAGEVSFGYCSPWAAPGIPMKAMKWLFMKHAPLILRPK
LDMAMLSWMARMLSNCTSERYAINKSRMLRLADYSRIALAELRAETGIAYDERMQGTLQLFRTQQQLDASAKDVKALAAD
GIPYEVLDRDGCIRVEPALKHVRDKIVGGLLTPKDETGDCFKFTNALAVKADALGVRFAYGTTIKALDVEGGRVRGIVTD
RDPDRERERMDADAVVVALGSYSPLLLKPFGISLPVYPVKGYSLTIPITDASRAPESTVMDETYKIAITRLGDRIRVGGM
AEISGYTNDLGLARRSTLEHSVTDLFPGGDVSKASFWSGLRPMTPDGTPVIGPTKIGGLFLNTGHGTLGWTMSTGSARLI
SDLVSARTPEIDSRDLAVSRYA
>Mature_422_residues
MKVIVLGAGIVGVTSAYQLAKSGHEVTVVDRQSGPALETSFANAGEVSFGYCSPWAAPGIPMKAMKWLFMKHAPLILRPK
LDMAMLSWMARMLSNCTSERYAINKSRMLRLADYSRIALAELRAETGIAYDERMQGTLQLFRTQQQLDASAKDVKALAAD
GIPYEVLDRDGCIRVEPALKHVRDKIVGGLLTPKDETGDCFKFTNALAVKADALGVRFAYGTTIKALDVEGGRVRGIVTD
RDPDRERERMDADAVVVALGSYSPLLLKPFGISLPVYPVKGYSLTIPITDASRAPESTVMDETYKIAITRLGDRIRVGGM
AEISGYTNDLGLARRSTLEHSVTDLFPGGDVSKASFWSGLRPMTPDGTPVIGPTKIGGLFLNTGHGTLGWTMSTGSARLI
SDLVSARTPEIDSRDLAVSRYA

Specific function: Oxidative deamination of D-amino acids [H]

COG id: COG0665

COG function: function code E; Glycine/D-amino acid oxidases (deaminating)

Gene ontology:

Cell location: Inner Membrane-Bound [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DadA oxidoreductase family [H]

Homologues:

Organism=Escherichia coli, GI1787438, Length=423, Percent_Identity=54.3735224586288, Blast_Score=465, Evalue=1e-132,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023080
- InterPro:   IPR006076 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: =1.4.99.1 [H]

Molecular weight: Translated: 45696; Mature: 45696

Theoretical pI: Translated: 8.78; Mature: 8.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVIVLGAGIVGVTSAYQLAKSGHEVTVVDRQSGPALETSFANAGEVSFGYCSPWAAPGI
CEEEEEECCHHHHHHHHHHHHCCCEEEEEECCCCCCEEECCCCCCCCEECCCCCCCCCCC
PMKAMKWLFMKHAPLILRPKLDMAMLSWMARMLSNCTSERYAINKSRMLRLADYSRIALA
CHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHEECCHHHEEEECCCCHHHHH
ELRAETGIAYDERMQGTLQLFRTQQQLDASAKDVKALAADGIPYEVLDRDGCIRVEPALK
HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCEEECCCCCEEECHHHH
HVRDKIVGGLLTPKDETGDCFKFTNALAVKADALGVRFAYGTTIKALDVEGGRVRGIVTD
HHHHHHHCCCCCCCCCCCCHHHHCCEEEEEECCCEEEEEECCEEEEEECCCCEEEEEECC
RDPDRERERMDADAVVVALGSYSPLLLKPFGISLPVYPVKGYSLTIPITDASRAPESTVM
CCCCHHHHHCCCCEEEEEECCCCCEEEECCCCCCCEEEECCEEEEEEECCCCCCCCCHHC
DETYKIAITRLGDRIRVGGMAEISGYTNDLGLARRSTLEHSVTDLFPGGDVSKASFWSGL
CCCEEEEEEECCCEEEECCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCC
RPMTPDGTPVIGPTKIGGLFLNTGHGTLGWTMSTGSARLISDLVSARTPEIDSRDLAVSR
CCCCCCCCEECCCCCCCEEEEECCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCEEEC
YA
CC
>Mature Secondary Structure
MKVIVLGAGIVGVTSAYQLAKSGHEVTVVDRQSGPALETSFANAGEVSFGYCSPWAAPGI
CEEEEEECCHHHHHHHHHHHHCCCEEEEEECCCCCCEEECCCCCCCCEECCCCCCCCCCC
PMKAMKWLFMKHAPLILRPKLDMAMLSWMARMLSNCTSERYAINKSRMLRLADYSRIALA
CHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCHHHEECCHHHEEEECCCCHHHHH
ELRAETGIAYDERMQGTLQLFRTQQQLDASAKDVKALAADGIPYEVLDRDGCIRVEPALK
HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCEEECCCCCEEECHHHH
HVRDKIVGGLLTPKDETGDCFKFTNALAVKADALGVRFAYGTTIKALDVEGGRVRGIVTD
HHHHHHHCCCCCCCCCCCCHHHHCCEEEEEECCCEEEEEECCEEEEEECCCCEEEEEECC
RDPDRERERMDADAVVVALGSYSPLLLKPFGISLPVYPVKGYSLTIPITDASRAPESTVM
CCCCHHHHHCCCCEEEEEECCCCCEEEECCCCCCCEEEECCEEEEEEECCCCCCCCCHHC
DETYKIAITRLGDRIRVGGMAEISGYTNDLGLARRSTLEHSVTDLFPGGDVSKASFWSGL
CCCEEEEEEECCCEEEECCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCC
RPMTPDGTPVIGPTKIGGLFLNTGHGTLGWTMSTGSARLISDLVSARTPEIDSRDLAVSR
CCCCCCCCEECCCCCCCEEEEECCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCEEEC
YA
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10792736 [H]