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The map label for this gene is ycjR [C]

Identifier: 86361113

GI number: 86361113

Start: 431707

End: 432558

Strand: Direct

Name: ycjR [C]

Synonym: RHE_PF00383

Alternate gene names: 86361113

Gene position: 431707-432558 (Clockwise)

Preceding gene: 86361108

Following gene: 86361115

Centisome position: 67.19

GC content: 60.09

Gene sequence:

>852_bases
ATGAAGATCGGCATGTGCATGTTCCTCTGGACGACAAGCGTCGGCCGAAAACACGAGGCACTGCTACGCGACATCAAGGA
GACCGGGTTTGATGGCGTCGAAATTCCAGTCTTTTCGGGCACACCCGACGACTACCGGCGGCTCGGGTCCTTGCTCGACC
GGATCGGCCTGGAACGGACCGCCGTTTCCGCCATTGGCGACCCCGCGATGAATCTGATCGCCTCCGACGCAGCAACCCGC
AGACGCGGTATCGACTACGTGAAATGGGCAATCGACTGCAGCGATGCGCTCGGCGCGACAATGCTGAGCGGGCCGCTACA
CTCGACGCTGGGAAAATTTTCGGGAAGCGGGCCGAGCGCGGCGGAACTCAAGCGCTCAGTTTCCTCGCAACTGGCGATCG
GCGATCATGCAGCAAGGCGCGGCGTCACCATCGGACTCGAGGCGCTCAACCGCTTCGAATGTTACCTGTTCAACACGATG
GATGACCTTGCGGCCCATATCGACGCGATCGGACATCCGAATATCCGCGCCATGTATGATACATTTCACAGCAACATCGA
AGAATCCGATCCCATCGGCGCCTTCACGCGAAACCGTGACCGCATCGTGCATGTCCACATTTCGGAGAACGACCGTGGCG
TACCAGGCCGTGGCAATATTCCATGGGCGGAAACCTTCAGGGCACTGCGCGCGAGTGGCTACGACGGATGGCTGACGATC
GAATCCTTTGGTCGGGCGCTCAAGGAGCTTGCCGCCGCGACAAGGGTCTGGCGCGACTTTTTCGAGACACCGCAATCAGT
CTACCGTGAAGGCTATCGCCATATCCGCGATGGATGGCACGCCGCGGCATGA

Upstream 100 bases:

>100_bases
GATCAACTGGCTTGACCATGATTGTACATTTGGTATGACCAGATTAGGGAAAGCCGCTGAGATTGCCGGGTATTGGCCGC
AAGGCCGAGGGGAGGAAAAA

Downstream 100 bases:

>100_bases
CCACCATGCAACCTGCCGATTTCGACCCAGACGAAGTTGCACCCCATGAGAGACCGATGCGGTCGAGCTGCCAGGAAGAA
TACCGGCGGTTATGCTGTTC

Product: putative epimerase protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MKIGMCMFLWTTSVGRKHEALLRDIKETGFDGVEIPVFSGTPDDYRRLGSLLDRIGLERTAVSAIGDPAMNLIASDAATR
RRGIDYVKWAIDCSDALGATMLSGPLHSTLGKFSGSGPSAAELKRSVSSQLAIGDHAARRGVTIGLEALNRFECYLFNTM
DDLAAHIDAIGHPNIRAMYDTFHSNIEESDPIGAFTRNRDRIVHVHISENDRGVPGRGNIPWAETFRALRASGYDGWLTI
ESFGRALKELAAATRVWRDFFETPQSVYREGYRHIRDGWHAAA

Sequences:

>Translated_283_residues
MKIGMCMFLWTTSVGRKHEALLRDIKETGFDGVEIPVFSGTPDDYRRLGSLLDRIGLERTAVSAIGDPAMNLIASDAATR
RRGIDYVKWAIDCSDALGATMLSGPLHSTLGKFSGSGPSAAELKRSVSSQLAIGDHAARRGVTIGLEALNRFECYLFNTM
DDLAAHIDAIGHPNIRAMYDTFHSNIEESDPIGAFTRNRDRIVHVHISENDRGVPGRGNIPWAETFRALRASGYDGWLTI
ESFGRALKELAAATRVWRDFFETPQSVYREGYRHIRDGWHAAA
>Mature_283_residues
MKIGMCMFLWTTSVGRKHEALLRDIKETGFDGVEIPVFSGTPDDYRRLGSLLDRIGLERTAVSAIGDPAMNLIASDAATR
RRGIDYVKWAIDCSDALGATMLSGPLHSTLGKFSGSGPSAAELKRSVSSQLAIGDHAARRGVTIGLEALNRFECYLFNTM
DDLAAHIDAIGHPNIRAMYDTFHSNIEESDPIGAFTRNRDRIVHVHISENDRGVPGRGNIPWAETFRALRASGYDGWLTI
ESFGRALKELAAATRVWRDFFETPQSVYREGYRHIRDGWHAAA

Specific function: Unknown

COG id: COG1082

COG function: function code G; Sugar phosphate isomerases/epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hyi family [H]

Homologues:

Organism=Escherichia coli, GI87081874, Length=241, Percent_Identity=29.045643153527, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI48994933, Length=249, Percent_Identity=23.6947791164659, Blast_Score=68, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013022
- InterPro:   IPR012307 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: NA

Molecular weight: Translated: 31297; Mature: 31297

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIGMCMFLWTTSVGRKHEALLRDIKETGFDGVEIPVFSGTPDDYRRLGSLLDRIGLERT
CCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHCCHHH
AVSAIGDPAMNLIASDAATRRRGIDYVKWAIDCSDALGATMLSGPLHSTLGKFSGSGPSA
HHHHHCCHHHHHHHHHHHHHHHCCCHHHEEECCHHHHHHHHHCCHHHHHHHHCCCCCCCH
AELKRSVSSQLAIGDHAARRGVTIGLEALNRFECYLFNTMDDLAAHIDAIGHPNIRAMYD
HHHHHHHHHHHHHCHHHHHCCCCHHHHHHHHHHHEEECCHHHHHHHHHHCCCCCHHHHHH
TFHSNIEESDPIGAFTRNRDRIVHVHISENDRGVPGRGNIPWAETFRALRASGYDGWLTI
HHHCCCCCCCCCCCEECCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEH
ESFGRALKELAAATRVWRDFFETPQSVYREGYRHIRDGWHAAA
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKIGMCMFLWTTSVGRKHEALLRDIKETGFDGVEIPVFSGTPDDYRRLGSLLDRIGLERT
CCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHCCHHH
AVSAIGDPAMNLIASDAATRRRGIDYVKWAIDCSDALGATMLSGPLHSTLGKFSGSGPSA
HHHHHCCHHHHHHHHHHHHHHHCCCHHHEEECCHHHHHHHHHCCHHHHHHHHCCCCCCCH
AELKRSVSSQLAIGDHAARRGVTIGLEALNRFECYLFNTMDDLAAHIDAIGHPNIRAMYD
HHHHHHHHHHHHHCHHHHHCCCCHHHHHHHHHHHEEECCHHHHHHHHHHCCCCCHHHHHH
TFHSNIEESDPIGAFTRNRDRIVHVHISENDRGVPGRGNIPWAETFRALRASGYDGWLTI
HHHCCCCCCCCCCCEECCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEH
ESFGRALKELAAATRVWRDFFETPQSVYREGYRHIRDGWHAAA
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]