| Definition | Rhizobium etli CFN 42 plasmid p42f, complete sequence. |
|---|---|
| Accession | NC_007766 |
| Length | 642,517 |
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The map label for this gene is ordL [C]
Identifier: 86361086
GI number: 86361086
Start: 399674
End: 400996
Strand: Direct
Name: ordL [C]
Synonym: RHE_PF00356
Alternate gene names: 86361086
Gene position: 399674-400996 (Clockwise)
Preceding gene: 86361084
Following gene: 86361087
Centisome position: 62.2
GC content: 63.11
Gene sequence:
>1323_bases ATGTCTCCACTCCTCAAACGAATACACAGCGACGAACGACTCCCCGGCAGGGCGGATGTCGTCGTCATCGGCGGCGGCAT CATCGGTGCAACCGCGGCTCTCTTTCTGGCGGAGCGGGGACTCTCGGTCGCTCTGGTCGAAAAAGGCCATGTCGGCTGCG AACAGTCGAGCCGCAACTGGGGTTGGTGCCGCCAGCAGAACCGGGATGAGCGGGAGTTGCCTCTCTCGGGTGTCGCGCTG CGGCTCTGGGGTGAGTTTGAATCCAAGATCGGTGCGGACGTCGGTTTCCGTCGATGCGGATTGCTCTACGCTACCGACAA TCCGCACCAATTGGCGGAATGGGAAGCATGGCGCCATACGGCCCGCCAGTTCAACGTCAATACGAAGATGCTGAGTGCCG CAGAAGCGGCTGCCGCAATCCCCGCAAATGGTCGTCGATGGCTCGGCGGGGTCCATTCAATCGACGATGGCAAGGGCGAG CCTGCCATCGCCGCGCCGACGATCGCTGAGGGCGCTCGCAAATTTGGAGCGTCGGTCCATCAAGAGTGCGCTGCGCGAGG TCTTGATCTGGCGAATGGAGCAGTAGCCGGAGTGATCACAGAAAAGGGGACGATCCGGACTCAAGCCGTTCTCTGCGCCG GCGGTGCCTGGACGTCGATGTTCTGTCGCCAGCACGGAGTTCTGTTTCCGCAGGCGAGCGTGCGCCAAACGGCGGTTCGT ACCCGGCCCACAGCGAATGTCGGCGAGGCGATCTATACGCCGGACTTCGCGCTGACCCGCCGGTTGGATGGCAGCTACAC GCTTGCGATCAGCGGCAGGGCAATGCTCGACATCACCCCCCAAGGCATTCGCTATGCCCGATGGTTCATGCCGATGTTCA TGAAGCGCCTGAAAGCGGTGCAGTTCGGCATCGGCAAATCCTTCCTCCAGGGTCCGGAAGCCTTCGGAAGCCTTAACAGG GGTAAATCATCCGCCTTCGAGCGATTGCGCGTTCTTGACCCGCCGCCGAGCCGCCGCACGATAGCGGCTATTTTGAAGCG GGTCACCGAGCAGTTTCCTGCATTGGCCGGAGTCGAACTCGCCGACAGCTGGGGAGCCTACGTGGATTTCACGCCGGACG CGGTGCCGGTCATCTCGCCGGCTGACGGTGTGAGCGGGCTCTATCTGGCCGCGGGCTGCTCCGGCCATGGCTTCGGCCTT GGCCCGGCCATCGGCCTTCTGGCGGCCGACCTCGTTGCCAATGATACACCCTGTGTCGACCCTACCCCCTTCCGCCTGTC GCGCCTCCTTGACGGGTCGAAGGTCAAGGTCGGCGCAATCTGA
Upstream 100 bases:
>100_bases TCAACTCGCGACGATAGCCGTCATTGGCCCAGATGCTTCTGCCGGAGGGGCAGCAGACAGTGCCGCATAGCTCGATTCCA ATCCATTCAGGTCAGCCTTC
Downstream 100 bases:
>100_bases TCGTGAGGCCAGATCCGGAGAAGTCCGTGGGCGACCTGGGAAAGCTAGCGCAATGGATTACGACGTAATCGTCATCGGCG GCGGGCTGGTAGGCGTATCG
Product: putative D-amino acid oxidase protein
Products: NA
Alternate protein names: Oxidoreductase; Sarcosine Oxidase Subunit Beta; Glycine/D-Amino Acid Oxidase; FAD-Dependent Oxidoreductase; Amino Acid Deaminase; AgaE Protein; D-Amino Acid Oxidase Protein; Deaminase; Glycine Oxidase ThiO; Glycine/D-Amino Acid Oxidase Deaminating; Aminomethyl Transferase Family Protein; Glycine Cleavage T-Protein; Sarcosine Oxidase Beta Subunit Family Protein; Deaminase Protein; Dye-Linked L-Proline Dehydrogenase Beta2 Subunit; Dehydrogenase; GntR Family Transcriptional Regulator; Sarcosine Oxidase; Opine Oxidase Subunit B; Proline Dehydrogenase Beta Subunit; Sarcosine Dehydrogenase; FAD Dependent Oxidoreductase/Aminomethyl Transferase; Glycine/D-Amino Acid Oxidases; Ferredoxin-Containing Dehydrogenase; Sarcosine Oxidase Beta Subunit; Exported Amino Acid Deaminase; Fad Dependent Oxidoreductase; Amino Acid Deaminase Transmembrane Protein; D-Amino Acid Dehydrogenase 2 Small Subunit
Number of amino acids: Translated: 440; Mature: 439
Protein sequence:
>440_residues MSPLLKRIHSDERLPGRADVVVIGGGIIGATAALFLAERGLSVALVEKGHVGCEQSSRNWGWCRQQNRDERELPLSGVAL RLWGEFESKIGADVGFRRCGLLYATDNPHQLAEWEAWRHTARQFNVNTKMLSAAEAAAAIPANGRRWLGGVHSIDDGKGE PAIAAPTIAEGARKFGASVHQECAARGLDLANGAVAGVITEKGTIRTQAVLCAGGAWTSMFCRQHGVLFPQASVRQTAVR TRPTANVGEAIYTPDFALTRRLDGSYTLAISGRAMLDITPQGIRYARWFMPMFMKRLKAVQFGIGKSFLQGPEAFGSLNR GKSSAFERLRVLDPPPSRRTIAAILKRVTEQFPALAGVELADSWGAYVDFTPDAVPVISPADGVSGLYLAAGCSGHGFGL GPAIGLLAADLVANDTPCVDPTPFRLSRLLDGSKVKVGAI
Sequences:
>Translated_440_residues MSPLLKRIHSDERLPGRADVVVIGGGIIGATAALFLAERGLSVALVEKGHVGCEQSSRNWGWCRQQNRDERELPLSGVAL RLWGEFESKIGADVGFRRCGLLYATDNPHQLAEWEAWRHTARQFNVNTKMLSAAEAAAAIPANGRRWLGGVHSIDDGKGE PAIAAPTIAEGARKFGASVHQECAARGLDLANGAVAGVITEKGTIRTQAVLCAGGAWTSMFCRQHGVLFPQASVRQTAVR TRPTANVGEAIYTPDFALTRRLDGSYTLAISGRAMLDITPQGIRYARWFMPMFMKRLKAVQFGIGKSFLQGPEAFGSLNR GKSSAFERLRVLDPPPSRRTIAAILKRVTEQFPALAGVELADSWGAYVDFTPDAVPVISPADGVSGLYLAAGCSGHGFGL GPAIGLLAADLVANDTPCVDPTPFRLSRLLDGSKVKVGAI >Mature_439_residues SPLLKRIHSDERLPGRADVVVIGGGIIGATAALFLAERGLSVALVEKGHVGCEQSSRNWGWCRQQNRDERELPLSGVALR LWGEFESKIGADVGFRRCGLLYATDNPHQLAEWEAWRHTARQFNVNTKMLSAAEAAAAIPANGRRWLGGVHSIDDGKGEP AIAAPTIAEGARKFGASVHQECAARGLDLANGAVAGVITEKGTIRTQAVLCAGGAWTSMFCRQHGVLFPQASVRQTAVRT RPTANVGEAIYTPDFALTRRLDGSYTLAISGRAMLDITPQGIRYARWFMPMFMKRLKAVQFGIGKSFLQGPEAFGSLNRG KSSAFERLRVLDPPPSRRTIAAILKRVTEQFPALAGVELADSWGAYVDFTPDAVPVISPADGVSGLYLAAGCSGHGFGLG PAIGLLAADLVANDTPCVDPTPFRLSRLLDGSKVKVGAI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI197927446, Length=424, Percent_Identity=25.7075471698113, Blast_Score=89, Evalue=6e-18, Organism=Homo sapiens, GI21361378, Length=424, Percent_Identity=25.7075471698113, Blast_Score=89, Evalue=6e-18, Organism=Homo sapiens, GI24797151, Length=409, Percent_Identity=23.2273838630807, Blast_Score=80, Evalue=3e-15, Organism=Drosophila melanogaster, GI20130091, Length=323, Percent_Identity=23.5294117647059, Blast_Score=84, Evalue=2e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 1.-.-.- [C]
Molecular weight: Translated: 47009; Mature: 46878
Theoretical pI: Translated: 9.49; Mature: 9.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPLLKRIHSDERLPGRADVVVIGGGIIGATAALFLAERGLSVALVEKGHVGCEQSSRNW CCHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC GWCRQQNRDERELPLSGVALRLWGEFESKIGADVGFRRCGLLYATDNPHQLAEWEAWRHT CCHHCCCCCCCCCCCCCEEEEEHHHHHHHHCCCCCHHHCCEEEECCCCHHHHHHHHHHHH ARQFNVNTKMLSAAEAAAAIPANGRRWLGGVHSIDDGKGEPAIAAPTIAEGARKFGASVH HHHCCCCHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHH QECAARGLDLANGAVAGVITEKGTIRTQAVLCAGGAWTSMFCRQHGVLFPQASVRQTAVR HHHHHCCCCCCCCCEEEEEECCCCEEEEEEEEECCHHHHHHHHHCCCCCCCHHHHHHHHH TRPTANVGEAIYTPDFALTRRLDGSYTLAISGRAMLDITPQGIRYARWFMPMFMKRLKAV CCCCCCCCCEEECCCHHHHEECCCCEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHHH QFGIGKSFLQGPEAFGSLNRGKSSAFERLRVLDPPPSRRTIAAILKRVTEQFPALAGVEL HHHCCHHHHCCCHHHCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEE ADSWGAYVDFTPDAVPVISPADGVSGLYLAAGCSGHGFGLGPAIGLLAADLVANDTPCVD CCCCCCEEEECCCCCEEECCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCC PTPFRLSRLLDGSKVKVGAI CCHHHHHHHCCCCCEEECCC >Mature Secondary Structure SPLLKRIHSDERLPGRADVVVIGGGIIGATAALFLAERGLSVALVEKGHVGCEQSSRNW CHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC GWCRQQNRDERELPLSGVALRLWGEFESKIGADVGFRRCGLLYATDNPHQLAEWEAWRHT CCHHCCCCCCCCCCCCCEEEEEHHHHHHHHCCCCCHHHCCEEEECCCCHHHHHHHHHHHH ARQFNVNTKMLSAAEAAAAIPANGRRWLGGVHSIDDGKGEPAIAAPTIAEGARKFGASVH HHHCCCCHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHH QECAARGLDLANGAVAGVITEKGTIRTQAVLCAGGAWTSMFCRQHGVLFPQASVRQTAVR HHHHHCCCCCCCCCEEEEEECCCCEEEEEEEEECCHHHHHHHHHCCCCCCCHHHHHHHHH TRPTANVGEAIYTPDFALTRRLDGSYTLAISGRAMLDITPQGIRYARWFMPMFMKRLKAV CCCCCCCCCEEECCCHHHHEECCCCEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHHH QFGIGKSFLQGPEAFGSLNRGKSSAFERLRVLDPPPSRRTIAAILKRVTEQFPALAGVEL HHHCCHHHHCCCHHHCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEE ADSWGAYVDFTPDAVPVISPADGVSGLYLAAGCSGHGFGLGPAIGLLAADLVANDTPCVD CCCCCCEEEECCCCCEEECCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCC PTPFRLSRLLDGSKVKVGAI CCHHHHHHHCCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA