| Definition | Rhizobium etli CFN 42 plasmid p42f, complete sequence. |
|---|---|
| Accession | NC_007766 |
| Length | 642,517 |
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The map label for this gene is imuB [H]
Identifier: 86360882
GI number: 86360882
Start: 159378
End: 160769
Strand: Direct
Name: imuB [H]
Synonym: RHE_PF00151
Alternate gene names: 86360882
Gene position: 159378-160769 (Clockwise)
Preceding gene: 86360881
Following gene: 86360883
Centisome position: 24.81
GC content: 66.16
Gene sequence:
>1392_bases GTGGCGGCGGCCGACGGGGCAGCGCACAAACGGGGCTTGCGCGTCGGCATGCCGGCTGCCAAGGCGCAGGCGCTGGTCCA GGGATTGACGATGATCGATGCCGATCCGATGGCTGACAGCGCGACACTTGAACGGCTGACGCTCTGGGCCTTGTCGCAAT ATTCACCCGTTGTCGCCATGGATCCCCCTGATGGCATCGTCATGGATACCGAAGGCGCCGATCACCTGCAGGGCGGCGAG GACCTGATGCTCTCCGGTCTCGTCAACCGCTTCCGTGCCCGGGGTCTCGCGGCGCGCGCGGCGATCGCCGACACCTGGGG TGCCGCGCATGCGCTCGCCCGGTCTAAGGATCGCGAGACGGTCATCATCCCCCGCGGCGACACCGCCAAAGCGGTCAATC GTTTGCCGCTATCCTCGCTGCGGTTGCCGGCCGAGATCGTCGGGAGCCTCAGAACCCTCGGCTTCGCCACCGTTGGCGAT CTGGCAGTGACGCCGCGGGCGCCACTGACGCTGCGTTTCGGGCCCGAGGTCGGGCGCCACCTCGACCAGATGTTCGGCCG GCTCGCCGAGCCCATCGATCCCATCCGGCCGGCGGATATCGTCGAGGTCCAAAGATCCTTTGCCGAACCGATCGGCGCAC CGGAGACGATCGAGAAATATGTGAGCCGCCTGGTGCGGCAGCTCTGTCTGGAGCTCGAGAAGCGCGGACTTGGCGTGCGG CGCGCCGATCTGATCGTCCACCGCGTCGACAACACAATCCAATCGCTTCGGGCCGGCACGGCCAAGCCCGTCCGAGATAT CGCTTGGCTGACAAAACTCTTCCGCGACCGGATCGAGAAGATCGAGCCCGGCTTCGGCATCGAGAAGCTGAGCCTCGCCG CCATCATCGCCGAGCCGCTCGTCGAGATGCAGTCAACGTCTTCCCTGATCGAAGAACAGGTGACCGATGTGACGCCGCTC ATCGACGTGCTCGGCAACCGCGGCGGCCAGCGGATTTTCCGTGTCGCGCCTGTCGCAAGCGACGTGCCCGAGCGCAGTAT CCAGCGGATCGCACCGACGGCCGACGAGAGCGGCGCCACCTGGCCGCTCCATTGGCAGCGGCCATCCAGGCTTCTGGGAC ACCCGGAAGCGATCGAGGTGATTGCCCTGCTGCCGGACCATCCGCCGGTCTCGTTCACCTGGCGCGGCAAGCGGCGCCGG GTAAAGCGCGCCGACGGCCCTGAGCGGATATTCGGGGAATGGTGGCAGCGCAGCTCCGAATGGATCGCGGTGCGCGACTA TTTCGTTGTCGAGGATGACGCCGGCGAGCGCTTCTGGATTTTCCGCTCCGGCGATGGCGTTGACGCCGACACCGGATCAC ACAAATGGTTCCTGCATGGGGTGTTTGCCTAA
Upstream 100 bases:
>100_bases TCTTCCGACACTGCCGACCGACCGGATCAGGCGCGCCGATCCTTCGCTATCTCCTGACACGCCGCTGGTGGTGATCGCCA GGAGCGGGTCGAAGCGATGG
Downstream 100 bases:
>100_bases TGCGCTACGCCGAACTGCAGGTCACCACGCATTTTTCGTTCCTCCGCGGCGCAAGCTCGGCCGAGGAACTCTTTGCGACG GCGAAGCTCATGGGCATCGC
Product: putative nucleotidyltransferase protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 463; Mature: 462
Protein sequence:
>463_residues MAAADGAAHKRGLRVGMPAAKAQALVQGLTMIDADPMADSATLERLTLWALSQYSPVVAMDPPDGIVMDTEGADHLQGGE DLMLSGLVNRFRARGLAARAAIADTWGAAHALARSKDRETVIIPRGDTAKAVNRLPLSSLRLPAEIVGSLRTLGFATVGD LAVTPRAPLTLRFGPEVGRHLDQMFGRLAEPIDPIRPADIVEVQRSFAEPIGAPETIEKYVSRLVRQLCLELEKRGLGVR RADLIVHRVDNTIQSLRAGTAKPVRDIAWLTKLFRDRIEKIEPGFGIEKLSLAAIIAEPLVEMQSTSSLIEEQVTDVTPL IDVLGNRGGQRIFRVAPVASDVPERSIQRIAPTADESGATWPLHWQRPSRLLGHPEAIEVIALLPDHPPVSFTWRGKRRR VKRADGPERIFGEWWQRSSEWIAVRDYFVVEDDAGERFWIFRSGDGVDADTGSHKWFLHGVFA
Sequences:
>Translated_463_residues MAAADGAAHKRGLRVGMPAAKAQALVQGLTMIDADPMADSATLERLTLWALSQYSPVVAMDPPDGIVMDTEGADHLQGGE DLMLSGLVNRFRARGLAARAAIADTWGAAHALARSKDRETVIIPRGDTAKAVNRLPLSSLRLPAEIVGSLRTLGFATVGD LAVTPRAPLTLRFGPEVGRHLDQMFGRLAEPIDPIRPADIVEVQRSFAEPIGAPETIEKYVSRLVRQLCLELEKRGLGVR RADLIVHRVDNTIQSLRAGTAKPVRDIAWLTKLFRDRIEKIEPGFGIEKLSLAAIIAEPLVEMQSTSSLIEEQVTDVTPL IDVLGNRGGQRIFRVAPVASDVPERSIQRIAPTADESGATWPLHWQRPSRLLGHPEAIEVIALLPDHPPVSFTWRGKRRR VKRADGPERIFGEWWQRSSEWIAVRDYFVVEDDAGERFWIFRSGDGVDADTGSHKWFLHGVFA >Mature_462_residues AAADGAAHKRGLRVGMPAAKAQALVQGLTMIDADPMADSATLERLTLWALSQYSPVVAMDPPDGIVMDTEGADHLQGGED LMLSGLVNRFRARGLAARAAIADTWGAAHALARSKDRETVIIPRGDTAKAVNRLPLSSLRLPAEIVGSLRTLGFATVGDL AVTPRAPLTLRFGPEVGRHLDQMFGRLAEPIDPIRPADIVEVQRSFAEPIGAPETIEKYVSRLVRQLCLELEKRGLGVRR ADLIVHRVDNTIQSLRAGTAKPVRDIAWLTKLFRDRIEKIEPGFGIEKLSLAAIIAEPLVEMQSTSSLIEEQVTDVTPLI DVLGNRGGQRIFRVAPVASDVPERSIQRIAPTADESGATWPLHWQRPSRLLGHPEAIEVIALLPDHPPVSFTWRGKRRRV KRADGPERIFGEWWQRSSEWIAVRDYFVVEDDAGERFWIFRSGDGVDADTGSHKWFLHGVFA
Specific function: Along with dnaE2 and imuA is required for the error- prone processing of DNA lesions [H]
COG id: COG0389
COG function: function code L; Nucleotidyltransferase/DNA polymerase involved in DNA repair
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001126 [H]
Pfam domain/function: PF00817 IMS [H]
EC number: NA
Molecular weight: Translated: 50968; Mature: 50837
Theoretical pI: Translated: 7.09; Mature: 7.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAADGAAHKRGLRVGMPAAKAQALVQGLTMIDADPMADSATLERLTLWALSQYSPVVAM CCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEE DPPDGIVMDTEGADHLQGGEDLMLSGLVNRFRARGLAARAAIADTWGAAHALARSKDRET CCCCCEEEECCCCHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCE VIIPRGDTAKAVNRLPLSSLRLPAEIVGSLRTLGFATVGDLAVTPRAPLTLRFGPEVGRH EEEECCCHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHCCCEEECCCCCEEEEECHHHHHH LDQMFGRLAEPIDPIRPADIVEVQRSFAEPIGAPETIEKYVSRLVRQLCLELEKRGLGVR HHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC RADLIVHRVDNTIQSLRAGTAKPVRDIAWLTKLFRDRIEKIEPGFGIEKLSLAAIIAEPL HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH VEMQSTSSLIEEQVTDVTPLIDVLGNRGGQRIFRVAPVASDVPERSIQRIAPTADESGAT HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCCCCCCCC WPLHWQRPSRLLGHPEAIEVIALLPDHPPVSFTWRGKRRRVKRADGPERIFGEWWQRSSE CCEECCCCHHHCCCCCCEEEEEECCCCCCCEEEECCHHHHCCCCCCHHHHHHHHHCCCCC WIAVRDYFVVEDDAGERFWIFRSGDGVDADTGSHKWFLHGVFA EEEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEEEECC >Mature Secondary Structure AAADGAAHKRGLRVGMPAAKAQALVQGLTMIDADPMADSATLERLTLWALSQYSPVVAM CCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEE DPPDGIVMDTEGADHLQGGEDLMLSGLVNRFRARGLAARAAIADTWGAAHALARSKDRET CCCCCEEEECCCCHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCE VIIPRGDTAKAVNRLPLSSLRLPAEIVGSLRTLGFATVGDLAVTPRAPLTLRFGPEVGRH EEEECCCHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHCCCEEECCCCCEEEEECHHHHHH LDQMFGRLAEPIDPIRPADIVEVQRSFAEPIGAPETIEKYVSRLVRQLCLELEKRGLGVR HHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC RADLIVHRVDNTIQSLRAGTAKPVRDIAWLTKLFRDRIEKIEPGFGIEKLSLAAIIAEPL HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH VEMQSTSSLIEEQVTDVTPLIDVLGNRGGQRIFRVAPVASDVPERSIQRIAPTADESGAT HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCCCCCCCC WPLHWQRPSRLLGHPEAIEVIALLPDHPPVSFTWRGKRRRVKRADGPERIFGEWWQRSSE CCEECCCCHHHCCCCCCEEEEEECCCCCCCEEEECCHHHHCCCCCCHHHHHHHHHCCCCC WIAVRDYFVVEDDAGERFWIFRSGDGVDADTGSHKWFLHGVFA EEEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA