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The map label for this gene is yhjC [H]

Identifier: 86360876

GI number: 86360876

Start: 152538

End: 153446

Strand: Direct

Name: yhjC [H]

Synonym: RHE_PF00145

Alternate gene names: 86360876

Gene position: 152538-153446 (Clockwise)

Preceding gene: 86360872

Following gene: 86360877

Centisome position: 23.74

GC content: 61.94

Gene sequence:

>909_bases
ATGGTGAATAAAGACATGGATCGGCTTGACCGCATGCAGCTCTTTATCCGGATCGTCGAGCGGCGTAGCTTCGCCGCCGC
GGCGTCCGACCTTGGGCTTGCACGTTCCACGGCCACTGAAGCGATCAAGCAGTTGGAAGACGATCTCGGCGTTCGCCTTC
TCGAGCGAACCACCCGCCATGTCGCGCCGACACTGGACGGCGCTGCCTTCTACAGGCGATGTGTTGCGATCCTGGCGGAG
GTGGACGAGGCGGAAAACGTCTTCCGTGACATGCAACCGCGCGGCCTGCTGCGCGTCGACGCCCATCCCTTGCTGACACG
CACATTCCTGTTGCCGCGGCTCAATGAATTCCTCGATCGTTATCCTCTGCTGGACCTGCAGATCGGGCAGGGCGACCGGC
TGGTCGATCTCGTCAGGGAGGGTATCGACTGCGTCATCCGCGCCGGAGAGATTGCTGATAGCGGCCTGATCATGCGTCGC
CTCGGGATGATTGCTGAAATCACCTGTGCCAGCCCAGCCTATATAGCGAGGCACGGAGTGCCACGCTCACCCGACGCGAT
GGAGGGGCATCGCGCCGTTGGCTTCATATCGTCCCGCACCGGGCAGGTCATGCCGCTCGAGTTCACGGTCGGTAGCACTG
TACGCTCGGTAACCTTGCCGTGCCGGCTAACGGTCAACAACTCCGACACAATGTCCGATCTCGCCCGCCTCGGCTTCGGC
CTCATTCAAGCGCCGCGTTACCGCCTCCAGCGGGACCTAGACGAAGGGACGCTGGTCGAGGTTCTTGCCGACTTTCTTCC
ACCGCCGACACCGCTTACCGCGCTCTACCCGCAGAACCGCCAGCTTTCACCGCGGGTGCGCGTCTTTCTCGACTGGATCG
TCGAATTGTTCTCCGAAGCTGATTTCTGA

Upstream 100 bases:

>100_bases
CCTTTGATGGTCATGTCACCTTTCTCCTATTTTACGGACAGGAGGTATTGCCGGCGACCCAGAAGAACAATCCGACAACA
TTTGACAACATAATTCGGCT

Downstream 100 bases:

>100_bases
CGTTCAGCTACCTCCGCGCAGCTGCCAAGCGGCTCGCAACTAGCTCTTGCCGAGGCCTCAAGCATTCTCGTGAACAGCGC
CTCCACTCCGCGCGAACATC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MVNKDMDRLDRMQLFIRIVERRSFAAAASDLGLARSTATEAIKQLEDDLGVRLLERTTRHVAPTLDGAAFYRRCVAILAE
VDEAENVFRDMQPRGLLRVDAHPLLTRTFLLPRLNEFLDRYPLLDLQIGQGDRLVDLVREGIDCVIRAGEIADSGLIMRR
LGMIAEITCASPAYIARHGVPRSPDAMEGHRAVGFISSRTGQVMPLEFTVGSTVRSVTLPCRLTVNNSDTMSDLARLGFG
LIQAPRYRLQRDLDEGTLVEVLADFLPPPTPLTALYPQNRQLSPRVRVFLDWIVELFSEADF

Sequences:

>Translated_302_residues
MVNKDMDRLDRMQLFIRIVERRSFAAAASDLGLARSTATEAIKQLEDDLGVRLLERTTRHVAPTLDGAAFYRRCVAILAE
VDEAENVFRDMQPRGLLRVDAHPLLTRTFLLPRLNEFLDRYPLLDLQIGQGDRLVDLVREGIDCVIRAGEIADSGLIMRR
LGMIAEITCASPAYIARHGVPRSPDAMEGHRAVGFISSRTGQVMPLEFTVGSTVRSVTLPCRLTVNNSDTMSDLARLGFG
LIQAPRYRLQRDLDEGTLVEVLADFLPPPTPLTALYPQNRQLSPRVRVFLDWIVELFSEADF
>Mature_302_residues
MVNKDMDRLDRMQLFIRIVERRSFAAAASDLGLARSTATEAIKQLEDDLGVRLLERTTRHVAPTLDGAAFYRRCVAILAE
VDEAENVFRDMQPRGLLRVDAHPLLTRTFLLPRLNEFLDRYPLLDLQIGQGDRLVDLVREGIDCVIRAGEIADSGLIMRR
LGMIAEITCASPAYIARHGVPRSPDAMEGHRAVGFISSRTGQVMPLEFTVGSTVRSVTLPCRLTVNNSDTMSDLARLGFG
LIQAPRYRLQRDLDEGTLVEVLADFLPPPTPLTALYPQNRQLSPRVRVFLDWIVELFSEADF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=298, Percent_Identity=38.255033557047, Blast_Score=206, Evalue=2e-54,
Organism=Escherichia coli, GI1786401, Length=289, Percent_Identity=34.2560553633218, Blast_Score=169, Evalue=2e-43,
Organism=Escherichia coli, GI1789639, Length=296, Percent_Identity=30.4054054054054, Blast_Score=141, Evalue=5e-35,
Organism=Escherichia coli, GI1787589, Length=280, Percent_Identity=30.7142857142857, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1787128, Length=283, Percent_Identity=28.9752650176678, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI87081978, Length=300, Percent_Identity=30.3333333333333, Blast_Score=117, Evalue=9e-28,
Organism=Escherichia coli, GI1789440, Length=286, Percent_Identity=26.9230769230769, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1788706, Length=177, Percent_Identity=30.5084745762712, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1789173, Length=293, Percent_Identity=22.8668941979522, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI157672245, Length=122, Percent_Identity=30.327868852459, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33874; Mature: 33874

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNKDMDRLDRMQLFIRIVERRSFAAAASDLGLARSTATEAIKQLEDDLGVRLLERTTRH
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAPTLDGAAFYRRCVAILAEVDEAENVFRDMQPRGLLRVDAHPLLTRTFLLPRLNEFLDR
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHH
YPLLDLQIGQGDRLVDLVREGIDCVIRAGEIADSGLIMRRLGMIAEITCASPAYIARHGV
CCCEEEEECCCCHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCC
PRSPDAMEGHRAVGFISSRTGQVMPLEFTVGSTVRSVTLPCRLTVNNSDTMSDLARLGFG
CCCCCCCCCCHHEEEEECCCCCEEEEEEECCCHHHEEEEEEEEEECCCHHHHHHHHHHHH
LIQAPRYRLQRDLDEGTLVEVLADFLPPPTPLTALYPQNRQLSPRVRVFLDWIVELFSEA
HHHCHHHHHHHCCCCCHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCC
DF
CC
>Mature Secondary Structure
MVNKDMDRLDRMQLFIRIVERRSFAAAASDLGLARSTATEAIKQLEDDLGVRLLERTTRH
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAPTLDGAAFYRRCVAILAEVDEAENVFRDMQPRGLLRVDAHPLLTRTFLLPRLNEFLDR
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHH
YPLLDLQIGQGDRLVDLVREGIDCVIRAGEIADSGLIMRRLGMIAEITCASPAYIARHGV
CCCEEEEECCCCHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCC
PRSPDAMEGHRAVGFISSRTGQVMPLEFTVGSTVRSVTLPCRLTVNNSDTMSDLARLGFG
CCCCCCCCCCHHEEEEECCCCCEEEEEEECCCHHHEEEEEEEEEECCCHHHHHHHHHHHH
LIQAPRYRLQRDLDEGTLVEVLADFLPPPTPLTALYPQNRQLSPRVRVFLDWIVELFSEA
HHHCHHHHHHHCCCCCHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCC
DF
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]