Click here to switch to the map view.

The map label for this gene is yciR [C]

Identifier: 86360872

GI number: 86360872

Start: 147518

End: 149140

Strand: Direct

Name: yciR [C]

Synonym: RHE_PF00141

Alternate gene names: 86360872

Gene position: 147518-149140 (Clockwise)

Preceding gene: 86360871

Following gene: 86360876

Centisome position: 22.96

GC content: 58.66

Gene sequence:

>1623_bases
ATGTCCGGTCAACCTGATGAGCTCGTCTCGTTTTATGGCAATAGCCTAAAATTAGCGAAATGCTCTCTGGCGGTTTCGAA
GGCCTACAAGACCGCAGCGGCGCCGGGTGCGACCCTTTGGGATCTATATCCGGAGCTTGACCCCGACCACAGATCGATGA
TCGAAACCGTGCTTGCCGGCGGCCTGCCGCGCAACATCGCGATCGGCGGTTCTCCCGGCAAGAGCCGCAGTCTCCTGGTT
TTCGCTACTGACCGGGGCCTTGGAATCATCGAGACGCACGATGCAAGAGCGAATTCTGAGGCGTCGACCGGGGAGGCCGA
TCGCGCTCTCCTTCTTCATCAGGCCAGCCATGACGTTCTGACGGGACTGGCAAACCGCCGCCAGTTCACCAGCGATCTCG
AGATAAGCTTTCCCGTGCCGAAGGGTCAAAAGCTGGCGCTGATGCTGCTGGATCTGGATGACTTCAAACCGGTCAACGAC
ACACTTGGGCACGGCGCCGGCGACACGGTGCTCAAGATGACGGCGGAACGTATCCAGGCCGTGCTTCGCAACGGCGAGAC
AGCTTACAGACTTGCGGGCGACGAATTCGCCGTCATTCAGCGGGGTCAGGAGCCTGCGGAGGCCGAAGATTTGGCTGGTT
CCCTGGTCCGCGCGTTCAAAGAGCCATTCACCATCGACGGGATCGATGTATTTGTCGGCGCCAGCGTCGGAATTGCCATT
GCGCCGACCGATGGCAATGACGGCGAACAATTGATGAAGGCAGCCGACATCGCACTCTATGCTGCCAAGAACGACGGACG
CGGCCGGGCGAGAATGTTCAACCGCTCGATGATGATCATGCTGGAGCAGCGTGAGACGCTGAGGCGCAGTTTGCGTGTGG
CCCTCAAGGAGCGGCAGTTTTTCATCGAGTATCAGCCGCTGGTGGAGCTATCGGAGGGGATCGTCGGCTTCGAGGCGTTG
CTGCGTTGGCGTCACCCGTATGCCGGAGTGGTTCCGCCGAGTGTTTTCATCCCGATGGCCGAAGCCGACGGTCTCATGGG
AGATATTGGAGCGTGGGTTCTTGAACAGGCGTGCCGCGAGGCGTCGACGTGGCCTTCGCATTTCATCGTGGCGGTCAATT
TATCGCCGGCTGAATTCCTGCGCCGCAGCTTCACCGATCGCGTATCCGGAATTCTTGACGCGGCCGAGTTTCCTGCCGAA
AGGTTGGAGATCGAAATAACCGAAACCGTCCTGCTTGAACGCACCACCAAAAATCTCGACATACTCCATACCCTGGAGGT
CCTGGGCGTTCGAATTGCACTGGACGACTTTGGCACCCGCTATTCATCGCTCAGCTATTTACAGAGCTTTCCGTTCGATA
CGATCAAGATCGACCGGCACTTCATCAAAGACGTCGAGACTAATCCGAAGAGTCAGACCATCGTGCGTTTCGTCATCGGC
CTTGCGCACGGGCTGGGGATGCGGATTACGGCCGAAGGCGTCGAAACGGCCGGCCAGGCGACGTGGCTTAGAAGAGAAAA
ATGCGATCGACTGCAGGGACATCTTTTGGGCGCCCCGATGTCCTCCGAAGCCATCGGCGATTTCCTGCGTCAGGGGTCGT
TCGCGACAGGTTGGATAAGCTAG

Upstream 100 bases:

>100_bases
TTCTGTTAATCAACGAGGTAAGATTGAACATCGCCACCGGCATGTTAGGTTCACACATGACACAACGAGTTGGGGATGAA
AGATCCAACACGGAGCGCCC

Downstream 100 bases:

>100_bases
TCTGATGAAGCGCCGACGACGTCTCGCAGCGGCAGGCTTCCGAGCTAAGCGGCGGAACGTCTCCTCCTCCGATTGTCCTT
CCCTTCGCCCATCGCCGTCA

Product: putative kinase protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 540; Mature: 539

Protein sequence:

>540_residues
MSGQPDELVSFYGNSLKLAKCSLAVSKAYKTAAAPGATLWDLYPELDPDHRSMIETVLAGGLPRNIAIGGSPGKSRSLLV
FATDRGLGIIETHDARANSEASTGEADRALLLHQASHDVLTGLANRRQFTSDLEISFPVPKGQKLALMLLDLDDFKPVND
TLGHGAGDTVLKMTAERIQAVLRNGETAYRLAGDEFAVIQRGQEPAEAEDLAGSLVRAFKEPFTIDGIDVFVGASVGIAI
APTDGNDGEQLMKAADIALYAAKNDGRGRARMFNRSMMIMLEQRETLRRSLRVALKERQFFIEYQPLVELSEGIVGFEAL
LRWRHPYAGVVPPSVFIPMAEADGLMGDIGAWVLEQACREASTWPSHFIVAVNLSPAEFLRRSFTDRVSGILDAAEFPAE
RLEIEITETVLLERTTKNLDILHTLEVLGVRIALDDFGTRYSSLSYLQSFPFDTIKIDRHFIKDVETNPKSQTIVRFVIG
LAHGLGMRITAEGVETAGQATWLRREKCDRLQGHLLGAPMSSEAIGDFLRQGSFATGWIS

Sequences:

>Translated_540_residues
MSGQPDELVSFYGNSLKLAKCSLAVSKAYKTAAAPGATLWDLYPELDPDHRSMIETVLAGGLPRNIAIGGSPGKSRSLLV
FATDRGLGIIETHDARANSEASTGEADRALLLHQASHDVLTGLANRRQFTSDLEISFPVPKGQKLALMLLDLDDFKPVND
TLGHGAGDTVLKMTAERIQAVLRNGETAYRLAGDEFAVIQRGQEPAEAEDLAGSLVRAFKEPFTIDGIDVFVGASVGIAI
APTDGNDGEQLMKAADIALYAAKNDGRGRARMFNRSMMIMLEQRETLRRSLRVALKERQFFIEYQPLVELSEGIVGFEAL
LRWRHPYAGVVPPSVFIPMAEADGLMGDIGAWVLEQACREASTWPSHFIVAVNLSPAEFLRRSFTDRVSGILDAAEFPAE
RLEIEITETVLLERTTKNLDILHTLEVLGVRIALDDFGTRYSSLSYLQSFPFDTIKIDRHFIKDVETNPKSQTIVRFVIG
LAHGLGMRITAEGVETAGQATWLRREKCDRLQGHLLGAPMSSEAIGDFLRQGSFATGWIS
>Mature_539_residues
SGQPDELVSFYGNSLKLAKCSLAVSKAYKTAAAPGATLWDLYPELDPDHRSMIETVLAGGLPRNIAIGGSPGKSRSLLVF
ATDRGLGIIETHDARANSEASTGEADRALLLHQASHDVLTGLANRRQFTSDLEISFPVPKGQKLALMLLDLDDFKPVNDT
LGHGAGDTVLKMTAERIQAVLRNGETAYRLAGDEFAVIQRGQEPAEAEDLAGSLVRAFKEPFTIDGIDVFVGASVGIAIA
PTDGNDGEQLMKAADIALYAAKNDGRGRARMFNRSMMIMLEQRETLRRSLRVALKERQFFIEYQPLVELSEGIVGFEALL
RWRHPYAGVVPPSVFIPMAEADGLMGDIGAWVLEQACREASTWPSHFIVAVNLSPAEFLRRSFTDRVSGILDAAEFPAER
LEIEITETVLLERTTKNLDILHTLEVLGVRIALDDFGTRYSSLSYLQSFPFDTIKIDRHFIKDVETNPKSQTIVRFVIGL
AHGLGMRITAEGVETAGQATWLRREKCDRLQGHLLGAPMSSEAIGDFLRQGSFATGWIS

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=413, Percent_Identity=34.3825665859564, Blast_Score=259, Evalue=2e-70,
Organism=Escherichia coli, GI87081921, Length=429, Percent_Identity=31.002331002331, Blast_Score=201, Evalue=8e-53,
Organism=Escherichia coli, GI226510982, Length=393, Percent_Identity=31.2977099236641, Blast_Score=165, Evalue=6e-42,
Organism=Escherichia coli, GI1788502, Length=251, Percent_Identity=35.4581673306773, Blast_Score=142, Evalue=4e-35,
Organism=Escherichia coli, GI1790496, Length=248, Percent_Identity=31.4516129032258, Blast_Score=138, Evalue=7e-34,
Organism=Escherichia coli, GI87081845, Length=259, Percent_Identity=35.5212355212355, Blast_Score=137, Evalue=2e-33,
Organism=Escherichia coli, GI87081980, Length=241, Percent_Identity=34.0248962655602, Blast_Score=132, Evalue=5e-32,
Organism=Escherichia coli, GI1786507, Length=237, Percent_Identity=32.4894514767932, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI1787055, Length=248, Percent_Identity=31.8548387096774, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI1788849, Length=350, Percent_Identity=29.1428571428571, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI87081743, Length=256, Percent_Identity=30.078125, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1788381, Length=399, Percent_Identity=26.5664160401003, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI87081977, Length=158, Percent_Identity=34.8101265822785, Blast_Score=99, Evalue=8e-22,
Organism=Escherichia coli, GI87082096, Length=414, Percent_Identity=24.8792270531401, Blast_Score=99, Evalue=8e-22,
Organism=Escherichia coli, GI87081881, Length=169, Percent_Identity=37.8698224852071, Blast_Score=96, Evalue=6e-21,
Organism=Escherichia coli, GI1788956, Length=163, Percent_Identity=38.0368098159509, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI145693134, Length=172, Percent_Identity=33.1395348837209, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI87082007, Length=164, Percent_Identity=36.5853658536585, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1787802, Length=161, Percent_Identity=33.5403726708075, Blast_Score=83, Evalue=5e-17,
Organism=Escherichia coli, GI1786584, Length=160, Percent_Identity=33.75, Blast_Score=82, Evalue=9e-17,
Organism=Escherichia coli, GI1787816, Length=176, Percent_Identity=33.5227272727273, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1787262, Length=160, Percent_Identity=31.25, Blast_Score=76, Evalue=6e-15,
Organism=Escherichia coli, GI87081974, Length=155, Percent_Identity=31.6129032258064, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1788085, Length=162, Percent_Identity=29.0123456790123, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1789650, Length=394, Percent_Identity=22.8426395939086, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1787410, Length=152, Percent_Identity=26.9736842105263, Blast_Score=66, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 59144; Mature: 59013

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGQPDELVSFYGNSLKLAKCSLAVSKAYKTAAAPGATLWDLYPELDPDHRSMIETVLAG
CCCCHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHC
GLPRNIAIGGSPGKSRSLLVFATDRGLGIIETHDARANSEASTGEADRALLLHQASHDVL
CCCCCEEECCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCHHHHEEHHCCHHHH
TGLANRRQFTSDLEISFPVPKGQKLALMLLDLDDFKPVNDTLGHGAGDTVLKMTAERIQA
HHHHHHHHCCCCCEEEECCCCCCEEEEEEEECCCCCCCHHHHCCCCCCHHHHHHHHHHHH
VLRNGETAYRLAGDEFAVIQRGQEPAEAEDLAGSLVRAFKEPFTIDGIDVFVGASVGIAI
HHHCCCEEEEECCCCEEEHCCCCCCCHHHHHHHHHHHHHHCCCEECCCCEEECCCCCEEE
APTDGNDGEQLMKAADIALYAAKNDGRGRARMFNRSMMIMLEQRETLRRSLRVALKERQF
EECCCCCHHHHHHHHHEEEEEECCCCCCHHHHHCCHHEEEEHHHHHHHHHHHHHHHHHHH
FIEYQPLVELSEGIVGFEALLRWRHPYAGVVPPSVFIPMAEADGLMGDIGAWVLEQACRE
EEEECHHHHHHCCHHHHHHHHHHCCCCCCCCCCCEEEECHHCCCCHHHHHHHHHHHHHHH
ASTWPSHFIVAVNLSPAEFLRRSFTDRVSGILDAAEFPAERLEIEITETVLLERTTKNLD
CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCHHHEEEEEEHHHEEHHCCCCCH
ILHTLEVLGVRIALDDFGTRYSSLSYLQSFPFDTIKIDRHFIKDVETNPKSQTIVRFVIG
HHHHHHHHHEEEEEHHHCCHHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCHHHHHHHHHH
LAHGLGMRITAEGVETAGQATWLRREKCDRLQGHLLGAPMSSEAIGDFLRQGSFATGWIS
HHHCCCCEEEECCHHCCHHHHHHHHHHHHHHHCCEECCCCCHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SGQPDELVSFYGNSLKLAKCSLAVSKAYKTAAAPGATLWDLYPELDPDHRSMIETVLAG
CCCHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHC
GLPRNIAIGGSPGKSRSLLVFATDRGLGIIETHDARANSEASTGEADRALLLHQASHDVL
CCCCCEEECCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCHHHHEEHHCCHHHH
TGLANRRQFTSDLEISFPVPKGQKLALMLLDLDDFKPVNDTLGHGAGDTVLKMTAERIQA
HHHHHHHHCCCCCEEEECCCCCCEEEEEEEECCCCCCCHHHHCCCCCCHHHHHHHHHHHH
VLRNGETAYRLAGDEFAVIQRGQEPAEAEDLAGSLVRAFKEPFTIDGIDVFVGASVGIAI
HHHCCCEEEEECCCCEEEHCCCCCCCHHHHHHHHHHHHHHCCCEECCCCEEECCCCCEEE
APTDGNDGEQLMKAADIALYAAKNDGRGRARMFNRSMMIMLEQRETLRRSLRVALKERQF
EECCCCCHHHHHHHHHEEEEEECCCCCCHHHHHCCHHEEEEHHHHHHHHHHHHHHHHHHH
FIEYQPLVELSEGIVGFEALLRWRHPYAGVVPPSVFIPMAEADGLMGDIGAWVLEQACRE
EEEECHHHHHHCCHHHHHHHHHHCCCCCCCCCCCEEEECHHCCCCHHHHHHHHHHHHHHH
ASTWPSHFIVAVNLSPAEFLRRSFTDRVSGILDAAEFPAERLEIEITETVLLERTTKNLD
CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCHHHEEEEEEHHHEEHHCCCCCH
ILHTLEVLGVRIALDDFGTRYSSLSYLQSFPFDTIKIDRHFIKDVETNPKSQTIVRFVIG
HHHHHHHHHEEEEEHHHCCHHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCHHHHHHHHHH
LAHGLGMRITAEGVETAGQATWLRREKCDRLQGHLLGAPMSSEAIGDFLRQGSFATGWIS
HHHCCCCEEEECCHHCCHHHHHHHHHHHHHHHCCEECCCCCHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]