Click here to switch to the map view.

The map label for this gene is ycjN [C]

Identifier: 86360824

GI number: 86360824

Start: 92282

End: 93586

Strand: Direct

Name: ycjN [C]

Synonym: RHE_PF00091

Alternate gene names: 86360824

Gene position: 92282-93586 (Clockwise)

Preceding gene: 86360823

Following gene: 86360825

Centisome position: 14.36

GC content: 62.15

Gene sequence:

>1305_bases
ATGACGATCAAGAGACGTGAATTTCTTGCTGCATCGGCAGCCGTTGCCGGTGTCGCCGGCCTCGGCATCAAGCCGTCCTT
TGCCCAGGCCGAACCGACCTATACGCCGGAAAGCGGCGCCAGCCTGCGGCTGCTGCGCTGGACGCCTTTCGTGAAGGGCG
ATGAAGATGCCTGGGTCGCCAATACCAAGAAGTTCACCGAAGCCACCGGCGTGGAAGTGCGCATCGACAAGGAGAGCTGG
GAGGACATTCGCCCGAAGGCCGCCGTTGCGGCCAATGTCGGCTCCGGTCCGGATCTCATCATGTGCTGGTTCGACGACGC
GCATCAATATCCGGAGAAGCTGGTCGATCTCACAGAACTCGGCAACTATCTCGGTAACAAGTACGAGGGCTGGTACGACG
GCCTGAAGGGCTATGCCACCCGTGACGACAAGTTCATCGCCATGCCGCTGACGACGATCGGCAATGCCGTTGTCTATCGC
GACAGCCACGTGAAGGCGGCCGGCTTCAACGAATTCCCGAACGATACCGCAGGCTTCCTCGAGCTTTGCAAGGCGATGAA
GGCAAAGGGCACGCCCGCCGGCTTCCCGCATGGCAAGGCGGTCGGCGACGGCAACAACTATGCCCATTGGCTGCTCTGGA
GCCATGGCGGCAAAATGGTCGACGAAAGCGGCGCGGTGACGATCAACAGCCCGGAGACGCTCGCCTCGATCAACTACGCT
AAGGAGCTCTATGCGACCTTCATTCCGGGCACGGAAAGCTGGCTCGATGTCAACAACAACCGCGCCTTCCTCGCCGGCCA
GGTATCGCTGATCGCCAACGGCGTCTCGGTCTATTACACGGCCAAGAACGACCCGAAGCTCGCCGAGATCGCCAAGGACA
TCCGCACGACGAACTTCCCGATCGGACCGGTCGGCAAGAGCGTCGAGCTTTTCCAGACGAGCTCGCTGCTGCTCTTCAAG
CACAGCAAATATCCGGAAGCGGCCAAGGCCTACATCAAGTTCATGATGGAAGCCGACCAGATGAACGCCTGGATCCAGGG
CTCCAGCGCCTATTGCTGCCAGCCACTCAAGGCCTTCGCCAAGAACCCGGTCTGGACCGCCGATCCGGTTCACGCGCCCT
ATGCGCGCGCCTCGGAAAGGCTGCGCCCGAACGGCTATGCCGGCCCGCTCGGTTACGCCTCGGCGGCTACCATGGCCGAC
TACGTGCTGGTCGACATGTATGCCGCCGCCGTCACCGGCCAGAAGTCGCCCGAGGACGCGATGAAGGAAGCCGAGCGCCG
GGCAAACCGCTACTACCGCGTCTGA

Upstream 100 bases:

>100_bases
CCACGGGCGCAAGCCCAATCGCGGATGCCAGGCCGCCGTTCACCAAGCGGGAGGTGAATGCCGGAGACTTGCTCCCGCTG
TTTCAATGAGGAGGAATCTC

Downstream 100 bases:

>100_bases
TCCGGAGCCGGGACATGCGGCATGCCTGATATCCGGCATGCCGCGAGCTCCTCAAGGACTGAATGCAATCTGGAGACAAG
CAATGTCGACCTTGAACTCA

Product: sugar ABC transporter, substrate-binding protein

Products: NA

Alternate protein names: Sugar ABC Transporter Periplasmic Protein; Sugar ABC Transporter

Number of amino acids: Translated: 434; Mature: 433

Protein sequence:

>434_residues
MTIKRREFLAASAAVAGVAGLGIKPSFAQAEPTYTPESGASLRLLRWTPFVKGDEDAWVANTKKFTEATGVEVRIDKESW
EDIRPKAAVAANVGSGPDLIMCWFDDAHQYPEKLVDLTELGNYLGNKYEGWYDGLKGYATRDDKFIAMPLTTIGNAVVYR
DSHVKAAGFNEFPNDTAGFLELCKAMKAKGTPAGFPHGKAVGDGNNYAHWLLWSHGGKMVDESGAVTINSPETLASINYA
KELYATFIPGTESWLDVNNNRAFLAGQVSLIANGVSVYYTAKNDPKLAEIAKDIRTTNFPIGPVGKSVELFQTSSLLLFK
HSKYPEAAKAYIKFMMEADQMNAWIQGSSAYCCQPLKAFAKNPVWTADPVHAPYARASERLRPNGYAGPLGYASAATMAD
YVLVDMYAAAVTGQKSPEDAMKEAERRANRYYRV

Sequences:

>Translated_434_residues
MTIKRREFLAASAAVAGVAGLGIKPSFAQAEPTYTPESGASLRLLRWTPFVKGDEDAWVANTKKFTEATGVEVRIDKESW
EDIRPKAAVAANVGSGPDLIMCWFDDAHQYPEKLVDLTELGNYLGNKYEGWYDGLKGYATRDDKFIAMPLTTIGNAVVYR
DSHVKAAGFNEFPNDTAGFLELCKAMKAKGTPAGFPHGKAVGDGNNYAHWLLWSHGGKMVDESGAVTINSPETLASINYA
KELYATFIPGTESWLDVNNNRAFLAGQVSLIANGVSVYYTAKNDPKLAEIAKDIRTTNFPIGPVGKSVELFQTSSLLLFK
HSKYPEAAKAYIKFMMEADQMNAWIQGSSAYCCQPLKAFAKNPVWTADPVHAPYARASERLRPNGYAGPLGYASAATMAD
YVLVDMYAAAVTGQKSPEDAMKEAERRANRYYRV
>Mature_433_residues
TIKRREFLAASAAVAGVAGLGIKPSFAQAEPTYTPESGASLRLLRWTPFVKGDEDAWVANTKKFTEATGVEVRIDKESWE
DIRPKAAVAANVGSGPDLIMCWFDDAHQYPEKLVDLTELGNYLGNKYEGWYDGLKGYATRDDKFIAMPLTTIGNAVVYRD
SHVKAAGFNEFPNDTAGFLELCKAMKAKGTPAGFPHGKAVGDGNNYAHWLLWSHGGKMVDESGAVTINSPETLASINYAK
ELYATFIPGTESWLDVNNNRAFLAGQVSLIANGVSVYYTAKNDPKLAEIAKDIRTTNFPIGPVGKSVELFQTSSLLLFKH
SKYPEAAKAYIKFMMEADQMNAWIQGSSAYCCQPLKAFAKNPVWTADPVHAPYARASERLRPNGYAGPLGYASAATMADY
VLVDMYAAAVTGQKSPEDAMKEAERRANRYYRV

Specific function: Probably Part Of The Binding-Protein-Dependent Transport System Ycjnop. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasmic (Potential) [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47502; Mature: 47371

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIKRREFLAASAAVAGVAGLGIKPSFAQAEPTYTPESGASLRLLRWTPFVKGDEDAWVA
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEC
NTKKFTEATGVEVRIDKESWEDIRPKAAVAANVGSGPDLIMCWFDDAHQYPEKLVDLTEL
CCHHHHHCCCCEEEECCCCHHHCCCCCEEEECCCCCCCEEEEEECCHHHHHHHHHHHHHH
GNYLGNKYEGWYDGLKGYATRDDKFIAMPLTTIGNAVVYRDSHVKAAGFNEFPNDTAGFL
HHHHCCCCCCHHHCCCCCCCCCCCEEEEEHHHHCCEEEEECCCCEECCCCCCCCCHHHHH
ELCKAMKAKGTPAGFPHGKAVGDGNNYAHWLLWSHGGKMVDESGAVTINSPETLASINYA
HHHHHHHCCCCCCCCCCCCEECCCCCEEEEEEECCCCCEEECCCCEEECCCHHHHHHHHH
KELYATFIPGTESWLDVNNNRAFLAGQVSLIANGVSVYYTAKNDPKLAEIAKDIRTTNFP
HHHHHHCCCCCCCEEEECCCEEEEEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHCCCC
IGPVGKSVELFQTSSLLLFKHSKYPEAAKAYIKFMMEADQMNAWIQGSSAYCCQPLKAFA
CCCCCCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHCEEEECCCCHHHHHHHHHH
KNPVWTADPVHAPYARASERLRPNGYAGPLGYASAATMADYVLVDMYAAAVTGQKSPEDA
CCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
MKEAERRANRYYRV
HHHHHHHHHCCCCC
>Mature Secondary Structure 
TIKRREFLAASAAVAGVAGLGIKPSFAQAEPTYTPESGASLRLLRWTPFVKGDEDAWVA
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEC
NTKKFTEATGVEVRIDKESWEDIRPKAAVAANVGSGPDLIMCWFDDAHQYPEKLVDLTEL
CCHHHHHCCCCEEEECCCCHHHCCCCCEEEECCCCCCCEEEEEECCHHHHHHHHHHHHHH
GNYLGNKYEGWYDGLKGYATRDDKFIAMPLTTIGNAVVYRDSHVKAAGFNEFPNDTAGFL
HHHHCCCCCCHHHCCCCCCCCCCCEEEEEHHHHCCEEEEECCCCEECCCCCCCCCHHHHH
ELCKAMKAKGTPAGFPHGKAVGDGNNYAHWLLWSHGGKMVDESGAVTINSPETLASINYA
HHHHHHHCCCCCCCCCCCCEECCCCCEEEEEEECCCCCEEECCCCEEECCCHHHHHHHHH
KELYATFIPGTESWLDVNNNRAFLAGQVSLIANGVSVYYTAKNDPKLAEIAKDIRTTNFP
HHHHHHCCCCCCCEEEECCCEEEEEEEEEEEECCEEEEEEECCCCHHHHHHHHHHHCCCC
IGPVGKSVELFQTSSLLLFKHSKYPEAAKAYIKFMMEADQMNAWIQGSSAYCCQPLKAFA
CCCCCCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHCEEEECCCCHHHHHHHHHH
KNPVWTADPVHAPYARASERLRPNGYAGPLGYASAATMADYVLVDMYAAAVTGQKSPEDA
CCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
MKEAERRANRYYRV
HHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA