| Definition | Rhizobium etli CFN 42 plasmid p42f, complete sequence. |
|---|---|
| Accession | NC_007766 |
| Length | 642,517 |
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The map label for this gene is 86360793
Identifier: 86360793
GI number: 86360793
Start: 59918
End: 60415
Strand: Direct
Name: 86360793
Synonym: RHE_PF00059
Alternate gene names: NA
Gene position: 59918-60415 (Clockwise)
Preceding gene: 86360787
Following gene: 86360794
Centisome position: 9.33
GC content: 58.03
Gene sequence:
>498_bases ATGCGGCTCTTACTCAACCTTTGCCTTCTCTTCTTCGCCACGGGGCCGTCCTTGGCTGCCGAAGAGGCGGCCCGTCGAGC GGCAAGCGATTTCGCCACCACCGCCACAATCTCGAACATGTTCGAGGTGGATGCCGCAAAAATCGAAATTGCTAAGGGGG CGGCAGGTGACGCCAAACAGTTCGCCGACGACATGCTGAACGATCATGAGCGCGCGGGTGCGGTAATTGCCGATGCAGCC AAGAAGGACGGCGTGCAGCTACCGACAGCCATTGACGACGAGCATAAAAAGAAGCTTGAAGCGCTTCAGCAGAGCGACCT GGAAAATCTCGACCAGGCCTATCTCTCGACGCAAGTGACGGCGCATCAGGATGCAGTGGCGCTTTTTGATGACTATTCGC AGAATGGGCCTGATGGGGCGCTGAAGCGCGCGTCGCAGAAGATCCTGCCGGACCTTAGAATGCATCTAACGCGAATCCGA GGGCTGGCAGCGAAGTGA
Upstream 100 bases:
>100_bases AAAAGGTTGACTGCAACTGTCTTCGATTATGGGAACCGTCCCCCGGTTCGGTTGTTGGGGCGCATTGCCTGCCTCAACCG AGTGAACACGGAGAACGATG
Downstream 100 bases:
>100_bases GGGACGTGTCTCCGGGAGCAGCATCGCACCCGCGGCTGGCGTCGCTCACTTCCCACGAGGTCGGCGGCGCCCGCAGGCTC AATGCCCTGCTGCGGCTCCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 165; Mature: 165
Protein sequence:
>165_residues MRLLLNLCLLFFATGPSLAAEEAARRAASDFATTATISNMFEVDAAKIEIAKGAAGDAKQFADDMLNDHERAGAVIADAA KKDGVQLPTAIDDEHKKKLEALQQSDLENLDQAYLSTQVTAHQDAVALFDDYSQNGPDGALKRASQKILPDLRMHLTRIR GLAAK
Sequences:
>Translated_165_residues MRLLLNLCLLFFATGPSLAAEEAARRAASDFATTATISNMFEVDAAKIEIAKGAAGDAKQFADDMLNDHERAGAVIADAA KKDGVQLPTAIDDEHKKKLEALQQSDLENLDQAYLSTQVTAHQDAVALFDDYSQNGPDGALKRASQKILPDLRMHLTRIR GLAAK >Mature_165_residues MRLLLNLCLLFFATGPSLAAEEAARRAASDFATTATISNMFEVDAAKIEIAKGAAGDAKQFADDMLNDHERAGAVIADAA KKDGVQLPTAIDDEHKKKLEALQQSDLENLDQAYLSTQVTAHQDAVALFDDYSQNGPDGALKRASQKILPDLRMHLTRIR GLAAK
Specific function: Unknown
COG id: COG3652
COG function: function code S; Predicted outer membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17794; Mature: 17794
Theoretical pI: Translated: 5.01; Mature: 5.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLLLNLCLLFFATGPSLAAEEAARRAASDFATTATISNMFEVDAAKIEIAKGAAGDAKQ CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHH FADDMLNDHERAGAVIADAAKKDGVQLPTAIDDEHKKKLEALQQSDLENLDQAYLSTQVT HHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH AHQDAVALFDDYSQNGPDGALKRASQKILPDLRMHLTRIRGLAAK HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MRLLLNLCLLFFATGPSLAAEEAARRAASDFATTATISNMFEVDAAKIEIAKGAAGDAKQ CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHH FADDMLNDHERAGAVIADAAKKDGVQLPTAIDDEHKKKLEALQQSDLENLDQAYLSTQVT HHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH AHQDAVALFDDYSQNGPDGALKRASQKILPDLRMHLTRIRGLAAK HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA