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The map label for this gene is rnfD [H]

Identifier: 85860863

GI number: 85860863

Start: 3024946

End: 3025998

Strand: Direct

Name: rnfD [H]

Synonym: SYN_01663

Alternate gene names: 85860863

Gene position: 3024946-3025998 (Clockwise)

Preceding gene: 85860862

Following gene: 85860864

Centisome position: 95.15

GC content: 51.09

Gene sequence:

>1053_bases
GTGGAGCAAGTAAAAGACACTCAGATTTCAGAAAATCCATTGCCGGCATTGACGGTCTCCCTGTCGCCCCATGTCAAGAG
CCGTGAATCCACGGCCAAGATCATGTGGATGGTGAATGCCTGCCTGTTGCCTCCTCTCGTTTTATCGGTTTTTATTTTCG
GTTTTCAGACCTTGATTATCACCCTGATCAGCGTTCTGAGCTGCGTCCTGACCGAAGCGGTTTCCCAGAAGCTGCTTCAC
CGTCCGATCACCATAAAGGACGGCAGTGCCGTGATCACAGGTCTTTTACTGGCCTATGTGATTCCACCCGGCGTTCCCTA
CTGGATGCCGATCCTGGGAGCGATTTTTGCCATTTACATCACTAAGCATCTTTTCGGTGGACTGGGATTCAACATTTTCA
ATCCGGCCCTGATCGGACGCGCCTTTCTGGTGGCAACCTTTCCTGTTGCCATGACCTCGGCATGGATTCTGCCCATCCAG
GATTTCGCCATTTTCAAATACATGCAGCCGGGAGTCGATGCGGTATCCACAGCCACCCCCCTTTATGTGCTCAAGCACTA
CGGACTCGCCGCTTTAATCGAGAAATACGGAACTCTTTCTACCGTTTATAAGGACTTCTTCCTTGGCGTCCGTCCGGGGT
GTATCGGGGAAACATCAAATCTGCTCCTTCTCCTGGGAGGGGCATTCTTAATCTATAAACGATATATTTCCTGGCACATT
CCCGTTTCCACCATCGCTTCCGTCGGTCTTTTGACGTGGATCTTCGGTGGGGAAGGATATTTCAACGGTGATCCCATTCT
GGCGGTGCTGTCTGGCGGTATCTTTTTAGGGGCCATCTTCATGGCCACGGACTACGTCACGGCTCCCACTCAGAAAACTG
CACAACTGGTATTCGGGATCGGTGTTGGAGCCATAACCGTCCTGATTCGTCTCAAGGGCGGCTATCCGGAAGGCATCTGC
TATGCAATACTGCTGATGAATACGCTGACACCGGCATTGGAATCCTGGTTTAAACCCAAGCGTTTTGCTCCTGCGAAAGG
TATTGTAAAATGA

Upstream 100 bases:

>100_bases
TTCTTGCGCCTTTGTATGTCCAGCCAAGAGGCCGCTTGTCCAATTTATCCGCCTGGCCAAGCAAAAGGCGAGAAAATAGT
TAAAAAGGAGTCAAGCCATC

Downstream 100 bases:

>100_bases
AAGAAATTATACGGATAACATTTCGCTTAACTCTTTCCTGTTTTCTTGCAGCCCTGGTTATGGGCATGACCTTTATCTTC
ACAGATAAAGCCAAAAAAGA

Product: sodium-translocating NADH-quinone reductase subunit B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MEQVKDTQISENPLPALTVSLSPHVKSRESTAKIMWMVNACLLPPLVLSVFIFGFQTLIITLISVLSCVLTEAVSQKLLH
RPITIKDGSAVITGLLLAYVIPPGVPYWMPILGAIFAIYITKHLFGGLGFNIFNPALIGRAFLVATFPVAMTSAWILPIQ
DFAIFKYMQPGVDAVSTATPLYVLKHYGLAALIEKYGTLSTVYKDFFLGVRPGCIGETSNLLLLLGGAFLIYKRYISWHI
PVSTIASVGLLTWIFGGEGYFNGDPILAVLSGGIFLGAIFMATDYVTAPTQKTAQLVFGIGVGAITVLIRLKGGYPEGIC
YAILLMNTLTPALESWFKPKRFAPAKGIVK

Sequences:

>Translated_350_residues
MEQVKDTQISENPLPALTVSLSPHVKSRESTAKIMWMVNACLLPPLVLSVFIFGFQTLIITLISVLSCVLTEAVSQKLLH
RPITIKDGSAVITGLLLAYVIPPGVPYWMPILGAIFAIYITKHLFGGLGFNIFNPALIGRAFLVATFPVAMTSAWILPIQ
DFAIFKYMQPGVDAVSTATPLYVLKHYGLAALIEKYGTLSTVYKDFFLGVRPGCIGETSNLLLLLGGAFLIYKRYISWHI
PVSTIASVGLLTWIFGGEGYFNGDPILAVLSGGIFLGAIFMATDYVTAPTQKTAQLVFGIGVGAITVLIRLKGGYPEGIC
YAILLMNTLTPALESWFKPKRFAPAKGIVK
>Mature_350_residues
MEQVKDTQISENPLPALTVSLSPHVKSRESTAKIMWMVNACLLPPLVLSVFIFGFQTLIITLISVLSCVLTEAVSQKLLH
RPITIKDGSAVITGLLLAYVIPPGVPYWMPILGAIFAIYITKHLFGGLGFNIFNPALIGRAFLVATFPVAMTSAWILPIQ
DFAIFKYMQPGVDAVSTATPLYVLKHYGLAALIEKYGTLSTVYKDFFLGVRPGCIGETSNLLLLLGGAFLIYKRYISWHI
PVSTIASVGLLTWIFGGEGYFNGDPILAVLSGGIFLGAIFMATDYVTAPTQKTAQLVFGIGVGAITVLIRLKGGYPEGIC
YAILLMNTLTPALESWFKPKRFAPAKGIVK

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family [H]

Homologues:

Organism=Escherichia coli, GI1787917, Length=356, Percent_Identity=35.3932584269663, Blast_Score=201, Evalue=7e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011303
- InterPro:   IPR004338 [H]

Pfam domain/function: PF03116 NQR2_RnfD_RnfE [H]

EC number: NA

Molecular weight: Translated: 37939; Mature: 37939

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQVKDTQISENPLPALTVSLSPHVKSRESTAKIMWMVNACLLPPLVLSVFIFGFQTLII
CCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLISVLSCVLTEAVSQKLLHRPITIKDGSAVITGLLLAYVIPPGVPYWMPILGAIFAIYI
HHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
TKHLFGGLGFNIFNPALIGRAFLVATFPVAMTSAWILPIQDFAIFKYMQPGVDAVSTATP
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHCCCCHHHHHHHH
LYVLKHYGLAALIEKYGTLSTVYKDFFLGVRPGCIGETSNLLLLLGGAFLIYKRYISWHI
HHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
PVSTIASVGLLTWIFGGEGYFNGDPILAVLSGGIFLGAIFMATDYVTAPTQKTAQLVFGI
CHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
GVGAITVLIRLKGGYPEGICYAILLMNTLTPALESWFKPKRFAPAKGIVK
HHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MEQVKDTQISENPLPALTVSLSPHVKSRESTAKIMWMVNACLLPPLVLSVFIFGFQTLII
CCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLISVLSCVLTEAVSQKLLHRPITIKDGSAVITGLLLAYVIPPGVPYWMPILGAIFAIYI
HHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
TKHLFGGLGFNIFNPALIGRAFLVATFPVAMTSAWILPIQDFAIFKYMQPGVDAVSTATP
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHCCCCHHHHHHHH
LYVLKHYGLAALIEKYGTLSTVYKDFFLGVRPGCIGETSNLLLLLGGAFLIYKRYISWHI
HHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
PVSTIASVGLLTWIFGGEGYFNGDPILAVLSGGIFLGAIFMATDYVTAPTQKTAQLVFGI
CHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
GVGAITVLIRLKGGYPEGICYAILLMNTLTPALESWFKPKRFAPAKGIVK
HHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA