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The map label for this gene is hdrD [H]

Identifier: 85860758

GI number: 85860758

Start: 2936523

End: 2937692

Strand: Direct

Name: hdrD [H]

Synonym: SYN_00363

Alternate gene names: 85860758

Gene position: 2936523-2937692 (Clockwise)

Preceding gene: 85860757

Following gene: 85860759

Centisome position: 92.36

GC content: 56.67

Gene sequence:

>1170_bases
ATGAATTCGGGAAAAACGGGAGCAGATCCTTTCGCCGCACGAGAAGTCGGGGCTGCGCTATCGGAGAAAATAAGGGAAAT
TTCCGAAGGCTGCGCTCGATGCGGGGCCTGCCGGAAGGAATGCGCCTTCTTGAGAAAGTACGGCACACCAGGAGAGATTG
CCGACGCCTACGATCCGGTGGATGATCTTTCTTTGTCCATGGTCTTCGAGTGCAGTCTCTGCCGTCTGTGTGCAGCCGTG
TGTCCCGCGAAGCTCAATCCGGCGGAGATGTTTCTGGAGATGCGCCGGGAGAGAATGCGGCGAGATCCCCGGCCCTTCCC
GGAGCACAGAGGTCTTCTGGCCTACGAAAAAACGGGGAACTCGAAACTCTTTGCTTGTTATGCCCTGCCCACCGGCTGCG
ATACGGTTTTTTTCACCGGTTGTGCCCTGCCGGGAACGAGACCAGAGCAGACCTTCCAGCTTTACCGGAAAATGCAACGG
GCAATCCCTGGATTAGGCGTCGTTATGGAATGCTGCAACAAGATTTCCCATGACCTCGGGAGGCAGGTGCATTTTCAGGC
CGTGTTCGAGAAGATGAGAACTTGCCTGGTCAGCCGGGGCGTGAAAAAAATTATCGCAGCCTGTCCCAATTGTTACCGCA
TGTTTGATGAGTATGGGAGGGGACTTTCCGTGATCACCGCCTATGAAGTCCTGGCGGAACATGCGGGTTCGGAAACTCTT
CCCGGAAATCAAATCATTGCCGTCCACGATCCCTGCGGACTTCGATTCAAAGAGCAGGCTCAGGCGGCGGTCCGGCGTCT
GGTGACTCGGCAGGGCGCGCAGATCGAAGAATTGCGTCACTCCGGCCGAAGAACGAGCTGCTGCGGCGAAGGGGGAGGCG
TCAGATGCCTTTCGCCGGAATTAGCCGGCCATTGGGGGAAAGAAATCAGGGAAGAAGCAAAAGGAAGAAGAATCCTGACC
TATTGCGCCGGTTGCGCCAATTCTCTGAACGGGTTGACCCCGACCAGCCATATCGTCGATTTTGTCTGTGATCCCGAAGC
AACCCTGGCCGGGCGGGCCAAGGTCTCCAAGCCCCCCGTAACGTATCTGAACCGGCTGATCCTGAAGTGGCGCTTCAGGA
AGGCAATGGATGCACACGTAATCCGTAATCGAGGGCGTGTGACCGTCTAA

Upstream 100 bases:

>100_bases
TTTACCTTCGAACATGCCATAAGGATGGCAGGTAAAACTGAGATGACGGTTTACGGATTTCATCGAGATTTGGGTTGAGA
GTTGGCCTTAAGAGGATGGG

Downstream 100 bases:

>100_bases
TTGGACTTTGATTCCCCAGTCTTCTCAGTTAAGCAATAATTGCCAACGGAATTGAACTCAAAAAGGTTTACAGCCGATGG
ACAGACATCAGAAAAAATTA

Product: glutamate synthase [NADPH] small chain

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 389

Protein sequence:

>389_residues
MNSGKTGADPFAAREVGAALSEKIREISEGCARCGACRKECAFLRKYGTPGEIADAYDPVDDLSLSMVFECSLCRLCAAV
CPAKLNPAEMFLEMRRERMRRDPRPFPEHRGLLAYEKTGNSKLFACYALPTGCDTVFFTGCALPGTRPEQTFQLYRKMQR
AIPGLGVVMECCNKISHDLGRQVHFQAVFEKMRTCLVSRGVKKIIAACPNCYRMFDEYGRGLSVITAYEVLAEHAGSETL
PGNQIIAVHDPCGLRFKEQAQAAVRRLVTRQGAQIEELRHSGRRTSCCGEGGGVRCLSPELAGHWGKEIREEAKGRRILT
YCAGCANSLNGLTPTSHIVDFVCDPEATLAGRAKVSKPPVTYLNRLILKWRFRKAMDAHVIRNRGRVTV

Sequences:

>Translated_389_residues
MNSGKTGADPFAAREVGAALSEKIREISEGCARCGACRKECAFLRKYGTPGEIADAYDPVDDLSLSMVFECSLCRLCAAV
CPAKLNPAEMFLEMRRERMRRDPRPFPEHRGLLAYEKTGNSKLFACYALPTGCDTVFFTGCALPGTRPEQTFQLYRKMQR
AIPGLGVVMECCNKISHDLGRQVHFQAVFEKMRTCLVSRGVKKIIAACPNCYRMFDEYGRGLSVITAYEVLAEHAGSETL
PGNQIIAVHDPCGLRFKEQAQAAVRRLVTRQGAQIEELRHSGRRTSCCGEGGGVRCLSPELAGHWGKEIREEAKGRRILT
YCAGCANSLNGLTPTSHIVDFVCDPEATLAGRAKVSKPPVTYLNRLILKWRFRKAMDAHVIRNRGRVTV
>Mature_389_residues
MNSGKTGADPFAAREVGAALSEKIREISEGCARCGACRKECAFLRKYGTPGEIADAYDPVDDLSLSMVFECSLCRLCAAV
CPAKLNPAEMFLEMRRERMRRDPRPFPEHRGLLAYEKTGNSKLFACYALPTGCDTVFFTGCALPGTRPEQTFQLYRKMQR
AIPGLGVVMECCNKISHDLGRQVHFQAVFEKMRTCLVSRGVKKIIAACPNCYRMFDEYGRGLSVITAYEVLAEHAGSETL
PGNQIIAVHDPCGLRFKEQAQAAVRRLVTRQGAQIEELRHSGRRTSCCGEGGGVRCLSPELAGHWGKEIREEAKGRRILT
YCAGCANSLNGLTPTSHIVDFVCDPEATLAGRAKVSKPPVTYLNRLILKWRFRKAMDAHVIRNRGRVTV

Specific function: Part of a complex that catalyzes the reversible reduction of CoM-S-S-CoB to the thiol-coenzymes H-S-CoM (coenzyme M) and H-S-CoB (coenzyme B). HdrD may act as the catalytic subunit [H]

COG id: COG0247

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR004017
- InterPro:   IPR012285
- InterPro:   IPR009051 [H]

Pfam domain/function: PF02754 CCG [H]

EC number: =1.8.98.1 [H]

Molecular weight: Translated: 43075; Mature: 43075

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
8.5 %Cys+Met (Translated Protein)
5.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
8.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSGKTGADPFAAREVGAALSEKIREISEGCARCGACRKECAFLRKYGTPGEIADAYDPV
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCH
DDLSLSMVFECSLCRLCAAVCPAKLNPAEMFLEMRRERMRRDPRPFPEHRGLLAYEKTGN
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCC
SKLFACYALPTGCDTVFFTGCALPGTRPEQTFQLYRKMQRAIPGLGVVMECCNKISHDLG
CEEEEEEECCCCCCHHHEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
RQVHFQAVFEKMRTCLVSRGVKKIIAACPNCYRMFDEYGRGLSVITAYEVLAEHAGSETL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
PGNQIIAVHDPCGLRFKEQAQAAVRRLVTRQGAQIEELRHSGRRTSCCGEGGGVRCLSPE
CCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCEEEECHH
LAGHWGKEIREEAKGRRILTYCAGCANSLNGLTPTSHIVDFVCDPEATLAGRAKVSKPPV
HHHHHHHHHHHHHCCCEEHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHCCCCCCCCCCH
TYLNRLILKWRFRKAMDAHVIRNRGRVTV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNSGKTGADPFAAREVGAALSEKIREISEGCARCGACRKECAFLRKYGTPGEIADAYDPV
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCH
DDLSLSMVFECSLCRLCAAVCPAKLNPAEMFLEMRRERMRRDPRPFPEHRGLLAYEKTGN
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCC
SKLFACYALPTGCDTVFFTGCALPGTRPEQTFQLYRKMQRAIPGLGVVMECCNKISHDLG
CEEEEEEECCCCCCHHHEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
RQVHFQAVFEKMRTCLVSRGVKKIIAACPNCYRMFDEYGRGLSVITAYEVLAEHAGSETL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
PGNQIIAVHDPCGLRFKEQAQAAVRRLVTRQGAQIEELRHSGRRTSCCGEGGGVRCLSPE
CCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCEEEECHH
LAGHWGKEIREEAKGRRILTYCAGCANSLNGLTPTSHIVDFVCDPEATLAGRAKVSKPPV
HHHHHHHHHHHHHCCCEEHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHCCCCCCCCCCH
TYLNRLILKWRFRKAMDAHVIRNRGRVTV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9063468; 8174566 [H]