| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
Click here to switch to the map view.
The map label for this gene is 85860403
Identifier: 85860403
GI number: 85860403
Start: 2571141
End: 2572130
Strand: Direct
Name: 85860403
Synonym: SYN_00077
Alternate gene names: NA
Gene position: 2571141-2572130 (Clockwise)
Preceding gene: 85860402
Following gene: 85860404
Centisome position: 80.87
GC content: 52.42
Gene sequence:
>990_bases ATGGAAAAATCATTTGTTAAACGGGTTTTTGCGTTTTTTCTGATCCTGGCTGCTTTCGCGTTCCTTTCACTGCCCCAGGC CTTTGCCGAACCGAAAGGAACCGTTGTCATGTTTCACGCGGGAAGCCTGACCATGCCCTTCGAAGCCATGGAGAAGGAAT TCGAGGCCAGATATCCCGGCGTGGACCTCCAGCGCGAGGCCAGTGGCAGTCAGGCGGCGGCCAGGAAGGTGACCGACCTG AACAAACCGTGCGATATCATGGCATCCGCTGACTTCAAGGTCATTGACAAGCTTCTGATCCCCAAGCATGCCGACTGGAA TATCCGTTTTGCCACCAACGAGCTCGTTCTCTGCTACACAGACAAGAGCAAATTCGCGAAGGAAGTGAATGCAAAGAACT GGTACAACATCCTGCAGAGGAAAGGCGTGGTCTGGGGTCACTCCGATCCGAATCTCGATCCCTGCGGATACCGGGCCCTG ATGGTGCTCCAGCTGGCCGAAAAATATTACAAGAAACCGGGTTTGTACGAAAAAATTCTCGCGAATCGGCCTGTGGAGAA TATCCGGCCCAAGTCGGTTGAACTGGTATCCCTGCTCCAGACTGGGAACATGGACTATGCTTGGGAATATCGTTCCGTTG CCGTTCAGCATAACCTCAAATATGTTTCGCTTCCGGACAAGATCAATCTGGGAAATTACAAGGAAGACCCGTACTATTCC CAGGCCGTTGTCAAAGTGACAGGGAAAAAACCGGGCGAATATATGGAAATGAAGGGAGCGTCGACCACCTACGGGATCAC GCTGATCAAGAATGCCCCGAACCAGGAGGCGGCGGTTGCCTTTCTCGAATATATGCTCAACCCCAAAGGCGGATTGAAAA TTCTGAAAGACCAGGGACAGCCGCCCTTCATTCCCTGCCGGGTGCCCACCCAGAAGATGAAATCCACACTGCCGGAAAAG CTGCAGAAGCTGGTAGAGGTAAAGGATTGA
Upstream 100 bases:
>100_bases CTTCTCATTAAATGTGTGCCTGTGATTTCCTATGTGCATGATCGGCTTATTGAATGACCTGTTAAAAGCAGGTTAAATTT TTCATAAGGAGGAATGAATC
Downstream 100 bases:
>100_bases CAGGAAGAACGTTATGGTGAGGAAGGGACCGTTCTATTGGGTTTCGATTTCGTGCGGCATCATGGTGCTCGCCTTTATTC TCCTGCCGCTCGTCGAACTG
Product: molybdate ABC transporter periplasmic substrate-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 329; Mature: 329
Protein sequence:
>329_residues MEKSFVKRVFAFFLILAAFAFLSLPQAFAEPKGTVVMFHAGSLTMPFEAMEKEFEARYPGVDLQREASGSQAAARKVTDL NKPCDIMASADFKVIDKLLIPKHADWNIRFATNELVLCYTDKSKFAKEVNAKNWYNILQRKGVVWGHSDPNLDPCGYRAL MVLQLAEKYYKKPGLYEKILANRPVENIRPKSVELVSLLQTGNMDYAWEYRSVAVQHNLKYVSLPDKINLGNYKEDPYYS QAVVKVTGKKPGEYMEMKGASTTYGITLIKNAPNQEAAVAFLEYMLNPKGGLKILKDQGQPPFIPCRVPTQKMKSTLPEK LQKLVEVKD
Sequences:
>Translated_329_residues MEKSFVKRVFAFFLILAAFAFLSLPQAFAEPKGTVVMFHAGSLTMPFEAMEKEFEARYPGVDLQREASGSQAAARKVTDL NKPCDIMASADFKVIDKLLIPKHADWNIRFATNELVLCYTDKSKFAKEVNAKNWYNILQRKGVVWGHSDPNLDPCGYRAL MVLQLAEKYYKKPGLYEKILANRPVENIRPKSVELVSLLQTGNMDYAWEYRSVAVQHNLKYVSLPDKINLGNYKEDPYYS QAVVKVTGKKPGEYMEMKGASTTYGITLIKNAPNQEAAVAFLEYMLNPKGGLKILKDQGQPPFIPCRVPTQKMKSTLPEK LQKLVEVKD >Mature_329_residues MEKSFVKRVFAFFLILAAFAFLSLPQAFAEPKGTVVMFHAGSLTMPFEAMEKEFEARYPGVDLQREASGSQAAARKVTDL NKPCDIMASADFKVIDKLLIPKHADWNIRFATNELVLCYTDKSKFAKEVNAKNWYNILQRKGVVWGHSDPNLDPCGYRAL MVLQLAEKYYKKPGLYEKILANRPVENIRPKSVELVSLLQTGNMDYAWEYRSVAVQHNLKYVSLPDKINLGNYKEDPYYS QAVVKVTGKKPGEYMEMKGASTTYGITLIKNAPNQEAAVAFLEYMLNPKGGLKILKDQGQPPFIPCRVPTQKMKSTLPEK LQKLVEVKD
Specific function: Unknown
COG id: COG0725
COG function: function code P; ABC-type molybdate transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 1 family. WtpA subfamily
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y2558_SYNAS (Q2LWH5)
Other databases:
- EMBL: CP000252 - RefSeq: YP_462605.1 - ProteinModelPortal: Q2LWH5 - SMR: Q2LWH5 - STRING: Q2LWH5 - GeneID: 3883568 - GenomeReviews: CP000252_GR - KEGG: sat:SYN_00077 - NMPDR: fig|56780.10.peg.2547 - eggNOG: COG0725 - HOGENOM: HBG457285 - OMA: IYKSVAN - ProtClustDB: PRK04168 - BioCyc: SACI56780:SYN_00077-MONOMER - InterPro: IPR022498 - InterPro: IPR006059 - TIGRFAMs: TIGR03730
Pfam domain/function: PF01547 SBP_bac_1
EC number: NA
Molecular weight: Translated: 37236; Mature: 37236
Theoretical pI: Translated: 9.64; Mature: 9.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEKSFVKRVFAFFLILAAFAFLSLPQAFAEPKGTVVMFHAGSLTMPFEAMEKEFEARYPG CCHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCC VDLQREASGSQAAARKVTDLNKPCDIMASADFKVIDKLLIPKHADWNIRFATNELVLCYT CCCCCCCCCCHHHHHHHHCCCCCCCEEECCCHHHHHHHHCCCCCCCEEEEECCCEEEEEE DKSKFAKEVNAKNWYNILQRKGVVWGHSDPNLDPCGYRALMVLQLAEKYYKKPGLYEKIL CHHHHHHHCCCHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH ANRPVENIRPKSVELVSLLQTGNMDYAWEYRSVAVQHNLKYVSLPDKINLGNYKEDPYYS HCCCHHHCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCC QAVVKVTGKKPGEYMEMKGASTTYGITLIKNAPNQEAAVAFLEYMLNPKGGLKILKDQGQ EEEEEEECCCCCCCEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCC PPFIPCRVPTQKMKSTLPEKLQKLVEVKD CCEEECCCCHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MEKSFVKRVFAFFLILAAFAFLSLPQAFAEPKGTVVMFHAGSLTMPFEAMEKEFEARYPG CCHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCC VDLQREASGSQAAARKVTDLNKPCDIMASADFKVIDKLLIPKHADWNIRFATNELVLCYT CCCCCCCCCCHHHHHHHHCCCCCCCEEECCCHHHHHHHHCCCCCCCEEEEECCCEEEEEE DKSKFAKEVNAKNWYNILQRKGVVWGHSDPNLDPCGYRALMVLQLAEKYYKKPGLYEKIL CHHHHHHHCCCHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH ANRPVENIRPKSVELVSLLQTGNMDYAWEYRSVAVQHNLKYVSLPDKINLGNYKEDPYYS HCCCHHHCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCC QAVVKVTGKKPGEYMEMKGASTTYGITLIKNAPNQEAAVAFLEYMLNPKGGLKILKDQGQ EEEEEEECCCCCCCEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCC PPFIPCRVPTQKMKSTLPEKLQKLVEVKD CCEEECCCCHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA