Definition Syntrophus aciditrophicus SB chromosome, complete genome.
Accession NC_007759
Length 3,179,300

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The map label for this gene is 85860403

Identifier: 85860403

GI number: 85860403

Start: 2571141

End: 2572130

Strand: Direct

Name: 85860403

Synonym: SYN_00077

Alternate gene names: NA

Gene position: 2571141-2572130 (Clockwise)

Preceding gene: 85860402

Following gene: 85860404

Centisome position: 80.87

GC content: 52.42

Gene sequence:

>990_bases
ATGGAAAAATCATTTGTTAAACGGGTTTTTGCGTTTTTTCTGATCCTGGCTGCTTTCGCGTTCCTTTCACTGCCCCAGGC
CTTTGCCGAACCGAAAGGAACCGTTGTCATGTTTCACGCGGGAAGCCTGACCATGCCCTTCGAAGCCATGGAGAAGGAAT
TCGAGGCCAGATATCCCGGCGTGGACCTCCAGCGCGAGGCCAGTGGCAGTCAGGCGGCGGCCAGGAAGGTGACCGACCTG
AACAAACCGTGCGATATCATGGCATCCGCTGACTTCAAGGTCATTGACAAGCTTCTGATCCCCAAGCATGCCGACTGGAA
TATCCGTTTTGCCACCAACGAGCTCGTTCTCTGCTACACAGACAAGAGCAAATTCGCGAAGGAAGTGAATGCAAAGAACT
GGTACAACATCCTGCAGAGGAAAGGCGTGGTCTGGGGTCACTCCGATCCGAATCTCGATCCCTGCGGATACCGGGCCCTG
ATGGTGCTCCAGCTGGCCGAAAAATATTACAAGAAACCGGGTTTGTACGAAAAAATTCTCGCGAATCGGCCTGTGGAGAA
TATCCGGCCCAAGTCGGTTGAACTGGTATCCCTGCTCCAGACTGGGAACATGGACTATGCTTGGGAATATCGTTCCGTTG
CCGTTCAGCATAACCTCAAATATGTTTCGCTTCCGGACAAGATCAATCTGGGAAATTACAAGGAAGACCCGTACTATTCC
CAGGCCGTTGTCAAAGTGACAGGGAAAAAACCGGGCGAATATATGGAAATGAAGGGAGCGTCGACCACCTACGGGATCAC
GCTGATCAAGAATGCCCCGAACCAGGAGGCGGCGGTTGCCTTTCTCGAATATATGCTCAACCCCAAAGGCGGATTGAAAA
TTCTGAAAGACCAGGGACAGCCGCCCTTCATTCCCTGCCGGGTGCCCACCCAGAAGATGAAATCCACACTGCCGGAAAAG
CTGCAGAAGCTGGTAGAGGTAAAGGATTGA

Upstream 100 bases:

>100_bases
CTTCTCATTAAATGTGTGCCTGTGATTTCCTATGTGCATGATCGGCTTATTGAATGACCTGTTAAAAGCAGGTTAAATTT
TTCATAAGGAGGAATGAATC

Downstream 100 bases:

>100_bases
CAGGAAGAACGTTATGGTGAGGAAGGGACCGTTCTATTGGGTTTCGATTTCGTGCGGCATCATGGTGCTCGCCTTTATTC
TCCTGCCGCTCGTCGAACTG

Product: molybdate ABC transporter periplasmic substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MEKSFVKRVFAFFLILAAFAFLSLPQAFAEPKGTVVMFHAGSLTMPFEAMEKEFEARYPGVDLQREASGSQAAARKVTDL
NKPCDIMASADFKVIDKLLIPKHADWNIRFATNELVLCYTDKSKFAKEVNAKNWYNILQRKGVVWGHSDPNLDPCGYRAL
MVLQLAEKYYKKPGLYEKILANRPVENIRPKSVELVSLLQTGNMDYAWEYRSVAVQHNLKYVSLPDKINLGNYKEDPYYS
QAVVKVTGKKPGEYMEMKGASTTYGITLIKNAPNQEAAVAFLEYMLNPKGGLKILKDQGQPPFIPCRVPTQKMKSTLPEK
LQKLVEVKD

Sequences:

>Translated_329_residues
MEKSFVKRVFAFFLILAAFAFLSLPQAFAEPKGTVVMFHAGSLTMPFEAMEKEFEARYPGVDLQREASGSQAAARKVTDL
NKPCDIMASADFKVIDKLLIPKHADWNIRFATNELVLCYTDKSKFAKEVNAKNWYNILQRKGVVWGHSDPNLDPCGYRAL
MVLQLAEKYYKKPGLYEKILANRPVENIRPKSVELVSLLQTGNMDYAWEYRSVAVQHNLKYVSLPDKINLGNYKEDPYYS
QAVVKVTGKKPGEYMEMKGASTTYGITLIKNAPNQEAAVAFLEYMLNPKGGLKILKDQGQPPFIPCRVPTQKMKSTLPEK
LQKLVEVKD
>Mature_329_residues
MEKSFVKRVFAFFLILAAFAFLSLPQAFAEPKGTVVMFHAGSLTMPFEAMEKEFEARYPGVDLQREASGSQAAARKVTDL
NKPCDIMASADFKVIDKLLIPKHADWNIRFATNELVLCYTDKSKFAKEVNAKNWYNILQRKGVVWGHSDPNLDPCGYRAL
MVLQLAEKYYKKPGLYEKILANRPVENIRPKSVELVSLLQTGNMDYAWEYRSVAVQHNLKYVSLPDKINLGNYKEDPYYS
QAVVKVTGKKPGEYMEMKGASTTYGITLIKNAPNQEAAVAFLEYMLNPKGGLKILKDQGQPPFIPCRVPTQKMKSTLPEK
LQKLVEVKD

Specific function: Unknown

COG id: COG0725

COG function: function code P; ABC-type molybdate transport system, periplasmic component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family. WtpA subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2558_SYNAS (Q2LWH5)

Other databases:

- EMBL:   CP000252
- RefSeq:   YP_462605.1
- ProteinModelPortal:   Q2LWH5
- SMR:   Q2LWH5
- STRING:   Q2LWH5
- GeneID:   3883568
- GenomeReviews:   CP000252_GR
- KEGG:   sat:SYN_00077
- NMPDR:   fig|56780.10.peg.2547
- eggNOG:   COG0725
- HOGENOM:   HBG457285
- OMA:   IYKSVAN
- ProtClustDB:   PRK04168
- BioCyc:   SACI56780:SYN_00077-MONOMER
- InterPro:   IPR022498
- InterPro:   IPR006059
- TIGRFAMs:   TIGR03730

Pfam domain/function: PF01547 SBP_bac_1

EC number: NA

Molecular weight: Translated: 37236; Mature: 37236

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKSFVKRVFAFFLILAAFAFLSLPQAFAEPKGTVVMFHAGSLTMPFEAMEKEFEARYPG
CCHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCC
VDLQREASGSQAAARKVTDLNKPCDIMASADFKVIDKLLIPKHADWNIRFATNELVLCYT
CCCCCCCCCCHHHHHHHHCCCCCCCEEECCCHHHHHHHHCCCCCCCEEEEECCCEEEEEE
DKSKFAKEVNAKNWYNILQRKGVVWGHSDPNLDPCGYRALMVLQLAEKYYKKPGLYEKIL
CHHHHHHHCCCHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
ANRPVENIRPKSVELVSLLQTGNMDYAWEYRSVAVQHNLKYVSLPDKINLGNYKEDPYYS
HCCCHHHCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCC
QAVVKVTGKKPGEYMEMKGASTTYGITLIKNAPNQEAAVAFLEYMLNPKGGLKILKDQGQ
EEEEEEECCCCCCCEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCC
PPFIPCRVPTQKMKSTLPEKLQKLVEVKD
CCEEECCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEKSFVKRVFAFFLILAAFAFLSLPQAFAEPKGTVVMFHAGSLTMPFEAMEKEFEARYPG
CCHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCC
VDLQREASGSQAAARKVTDLNKPCDIMASADFKVIDKLLIPKHADWNIRFATNELVLCYT
CCCCCCCCCCHHHHHHHHCCCCCCCEEECCCHHHHHHHHCCCCCCCEEEEECCCEEEEEE
DKSKFAKEVNAKNWYNILQRKGVVWGHSDPNLDPCGYRALMVLQLAEKYYKKPGLYEKIL
CHHHHHHHCCCHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
ANRPVENIRPKSVELVSLLQTGNMDYAWEYRSVAVQHNLKYVSLPDKINLGNYKEDPYYS
HCCCHHHCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCC
QAVVKVTGKKPGEYMEMKGASTTYGITLIKNAPNQEAAVAFLEYMLNPKGGLKILKDQGQ
EEEEEEECCCCCCCEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCC
PPFIPCRVPTQKMKSTLPEKLQKLVEVKD
CCEEECCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA