| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
Click here to switch to the map view.
The map label for this gene is yfiQ [C]
Identifier: 85860036
GI number: 85860036
Start: 2249139
End: 2251244
Strand: Direct
Name: yfiQ [C]
Synonym: SYN_00049
Alternate gene names: 85860036
Gene position: 2249139-2251244 (Clockwise)
Preceding gene: 85860035
Following gene: 85860037
Centisome position: 70.74
GC content: 53.61
Gene sequence:
>2106_bases ATGCATTCATTTTTCAATCCGCAGAGCATTGCCGTCATCGGAGCAACCCCCAAAACCTTTAAAGGGGGTTATGCTATTCT CAAAAACCTGAAGACGACTTTCAAGGGACGGATTTACCCCATCAATCCCCAGTATGCTGAAATAGAAGGGCTTCCCTGCT TCCCGTCGATCAAGGACATTCCTGAAGCCGTTGACCTGGCGATCATTTTCATCGCAGCCGTTCATGTTCCGGCCGCTCTT GAGCAATGCGCAATCAAAGGCGTTTCGGGAATCATGATCGAATCAGGCGGATTTGCCGAGGCGGATGAAAAGGGAAAAAG TCTTCAAGACGCCATCAGGAGTTTTGTTGAGCGAACAGGGATACGCGTCTGGGGACCAAACTGCATGGGCCTGGTTGATG GGATCCGGGGTCATATCTTCTCTTTCACCGATCCGAAGGTCCTGCCTTTCTGCCTGCATCCCGGCCCGGTGTCTCTCATT GTTCAAAGCGGCATGCTCTCCGCCGGTTTCGTCATCGATATTTTAAGTCATGGCATAACCGGTTTCAGTAAGGTCTGTTC CATCGGCAATAAAGCGGACATTGATGAAAGTGATGTCCTCTCTTTTCTTCTTGAAGATCCGGATACCCGATGTGTCGGAC TTTATCTCGAATCTTTCGTCAACGGCAGACGATTCATGGACCTCTGCCGGAAGAGCGATAAGCCCGTGATCGTTCTGAAG GGCGGCAGAAGCCGCAAGGGAGCGGAGGCAGCCGTCAGCCATACCGCCAGTCTGGCGGGAAATTATCGGGTCGCCGCCGG CGCGCTCGCCCAGGCCGGTGCTTATGAAGCAAGAGATTTCCATCAGCTTGTTGATTTCTGCCGCACACTCGCACTGTATC CTCCAAAGCGGAACAAATCCAGGGGACGTATCGCGGTCATCACCTTCAGTGGCGCCGCGGGGATTGTATCCACTGATTTC ATGAATGAGCTGGATCTCGACGTGGCAGAACTTTCAGAGGCTACGAAGATTCGCCTGGGGCGCATTTTCCCCGAATGGAT GCCTGTCGCCAATCCGGTGGACATCTGGCCGGCCATAGAACAGCACAGCGGTACCGGCCTGGATATCTACAGTCTTGCCA TGGAAGCGGCCCTTGATGATCCGGGAGTGGATGCCGTGCTTGTACATGCCTTTTCCGGCTACACAAGAATTCGGCTGGAT TTTGATAAAATTTCCCGACAGAGCCGCTCTTCCGGGAAGCCCGTTCTGCTCTGGCTGCCCGGCAACCGGGATGACGCCTT CCAGGTTCAGATAAAGGCCCGCGATTGCGGCGTCCTTGTATTTCATGAACTTTACCGGGCCGTATCGTGTCTGTCCATCC TGTTCCAAAGGACCGGGACCTGCTGGCTGCCTGAAGGGAATCAGCCTGTGCCGACCGATGAGCTTCAGAATATCCCCGAT GACATTTCCGATCTTCTCAATAATGCGGGTGGATCTCTGGATGAAAGGCTGTCGAAAAATATCCTGAAATCCTTTGGAAT TCCCACCGTTGAAGAAACATGGATAAAGGACCCCCGGCTGTGCGAGTCAAAAGCGATTTCAATGGGGTTTCCGCTCGTCA TGAAAGGATTGCAGACCGGAGTTGTCCATAAAACGGAACACGGCCTGGTCGAGTTGAATATTGTCGGACCGGAAGAAGCC AGACAGAGCTTTGAAAGGCTTCTGCAGAAAATGAACGGGCGGGGCTCAGTTTTAATGCAGAAGCAATTGCAGGGCGACGT GGAATTGATCATGGGCGCCATCCGAGACCCTCAGTTCGGCCCCTGCGTCATGATCGGCATCGGTGGAAGGATGGCCGATC TCATTGAAGATTCGGTCTTTACCGTCGCCCCGCTCAGTGTAAAAGAAGCCCTCGACGCCATCGGACGATTGCGAACGCAG ACTCTTCTGGATGGATTCCGCGGTTCTCAACCTGCTGACCGTCACGTTCTTGCCTCCCTGATGGTCACCCTGGGCCACCT TATGGCGCGCTACCCCCGTATCCAGGAAATTGATATCAATCCCATCCTTGTTTCGGGCAGCCAGGCCGTTGCCGTGGATG CGACAGTCGTTTTAAGCAATCCTTGA
Upstream 100 bases:
>100_bases TAAATTTATACAAGTTCCATGGATCACAGAGATTCAGAAAATATTGCCAGATGTTAATACCATGAACTAACCGACACCAT CTCATTCATTACTTGATCTC
Downstream 100 bases:
>100_bases AATCGAATGTAAAATGGAGGGAAAAATCATGAAGAATCCTGATCCAAACAAGAAAATTCCCAGCAACCCTGCTCTTGAAG AGGAAATCCGGCGACGTGCG
Product: acetyl-CoA synthetase subunit beta
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 701; Mature: 701
Protein sequence:
>701_residues MHSFFNPQSIAVIGATPKTFKGGYAILKNLKTTFKGRIYPINPQYAEIEGLPCFPSIKDIPEAVDLAIIFIAAVHVPAAL EQCAIKGVSGIMIESGGFAEADEKGKSLQDAIRSFVERTGIRVWGPNCMGLVDGIRGHIFSFTDPKVLPFCLHPGPVSLI VQSGMLSAGFVIDILSHGITGFSKVCSIGNKADIDESDVLSFLLEDPDTRCVGLYLESFVNGRRFMDLCRKSDKPVIVLK GGRSRKGAEAAVSHTASLAGNYRVAAGALAQAGAYEARDFHQLVDFCRTLALYPPKRNKSRGRIAVITFSGAAGIVSTDF MNELDLDVAELSEATKIRLGRIFPEWMPVANPVDIWPAIEQHSGTGLDIYSLAMEAALDDPGVDAVLVHAFSGYTRIRLD FDKISRQSRSSGKPVLLWLPGNRDDAFQVQIKARDCGVLVFHELYRAVSCLSILFQRTGTCWLPEGNQPVPTDELQNIPD DISDLLNNAGGSLDERLSKNILKSFGIPTVEETWIKDPRLCESKAISMGFPLVMKGLQTGVVHKTEHGLVELNIVGPEEA RQSFERLLQKMNGRGSVLMQKQLQGDVELIMGAIRDPQFGPCVMIGIGGRMADLIEDSVFTVAPLSVKEALDAIGRLRTQ TLLDGFRGSQPADRHVLASLMVTLGHLMARYPRIQEIDINPILVSGSQAVAVDATVVLSNP
Sequences:
>Translated_701_residues MHSFFNPQSIAVIGATPKTFKGGYAILKNLKTTFKGRIYPINPQYAEIEGLPCFPSIKDIPEAVDLAIIFIAAVHVPAAL EQCAIKGVSGIMIESGGFAEADEKGKSLQDAIRSFVERTGIRVWGPNCMGLVDGIRGHIFSFTDPKVLPFCLHPGPVSLI VQSGMLSAGFVIDILSHGITGFSKVCSIGNKADIDESDVLSFLLEDPDTRCVGLYLESFVNGRRFMDLCRKSDKPVIVLK GGRSRKGAEAAVSHTASLAGNYRVAAGALAQAGAYEARDFHQLVDFCRTLALYPPKRNKSRGRIAVITFSGAAGIVSTDF MNELDLDVAELSEATKIRLGRIFPEWMPVANPVDIWPAIEQHSGTGLDIYSLAMEAALDDPGVDAVLVHAFSGYTRIRLD FDKISRQSRSSGKPVLLWLPGNRDDAFQVQIKARDCGVLVFHELYRAVSCLSILFQRTGTCWLPEGNQPVPTDELQNIPD DISDLLNNAGGSLDERLSKNILKSFGIPTVEETWIKDPRLCESKAISMGFPLVMKGLQTGVVHKTEHGLVELNIVGPEEA RQSFERLLQKMNGRGSVLMQKQLQGDVELIMGAIRDPQFGPCVMIGIGGRMADLIEDSVFTVAPLSVKEALDAIGRLRTQ TLLDGFRGSQPADRHVLASLMVTLGHLMARYPRIQEIDINPILVSGSQAVAVDATVVLSNP >Mature_701_residues MHSFFNPQSIAVIGATPKTFKGGYAILKNLKTTFKGRIYPINPQYAEIEGLPCFPSIKDIPEAVDLAIIFIAAVHVPAAL EQCAIKGVSGIMIESGGFAEADEKGKSLQDAIRSFVERTGIRVWGPNCMGLVDGIRGHIFSFTDPKVLPFCLHPGPVSLI VQSGMLSAGFVIDILSHGITGFSKVCSIGNKADIDESDVLSFLLEDPDTRCVGLYLESFVNGRRFMDLCRKSDKPVIVLK GGRSRKGAEAAVSHTASLAGNYRVAAGALAQAGAYEARDFHQLVDFCRTLALYPPKRNKSRGRIAVITFSGAAGIVSTDF MNELDLDVAELSEATKIRLGRIFPEWMPVANPVDIWPAIEQHSGTGLDIYSLAMEAALDDPGVDAVLVHAFSGYTRIRLD FDKISRQSRSSGKPVLLWLPGNRDDAFQVQIKARDCGVLVFHELYRAVSCLSILFQRTGTCWLPEGNQPVPTDELQNIPD DISDLLNNAGGSLDERLSKNILKSFGIPTVEETWIKDPRLCESKAISMGFPLVMKGLQTGVVHKTEHGLVELNIVGPEEA RQSFERLLQKMNGRGSVLMQKQLQGDVELIMGAIRDPQFGPCVMIGIGGRMADLIEDSVFTVAPLSVKEALDAIGRLRTQ TLLDGFRGSQPADRHVLASLMVTLGHLMARYPRIQEIDINPILVSGSQAVAVDATVVLSNP
Specific function: Unknown
COG id: COG1042
COG function: function code C; Acyl-CoA synthetase (NDP forming)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli yfiQ [H]
Homologues:
Organism=Escherichia coli, GI1788938, Length=749, Percent_Identity=26.5687583444593, Blast_Score=188, Evalue=1e-48,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014089 - InterPro: IPR013650 - InterPro: IPR003781 - InterPro: IPR016040 - InterPro: IPR005809 - InterPro: IPR016102 [H]
Pfam domain/function: PF08442 ATP-grasp_2; PF02629 CoA_binding [H]
EC number: NA
Molecular weight: Translated: 76194; Mature: 76194
Theoretical pI: Translated: 6.40; Mature: 6.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHSFFNPQSIAVIGATPKTFKGGYAILKNLKTTFKGRIYPINPQYAEIEGLPCFPSIKDI CCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCCCEEECCCCCCCCHHHH PEAVDLAIIFIAAVHVPAALEQCAIKGVSGIMIESGGFAEADEKGKSLQDAIRSFVERTG HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHCC IRVWGPNCMGLVDGIRGHIFSFTDPKVLPFCLHPGPVSLIVQSGMLSAGFVIDILSHGIT CEEECCCHHHHHHHHHCCEEECCCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHCCCC GFSKVCSIGNKADIDESDVLSFLLEDPDTRCVGLYLESFVNGRRFMDLCRKSDKPVIVLK CHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEE GGRSRKGAEAAVSHTASLAGNYRVAAGALAQAGAYEARDFHQLVDFCRTLALYPPKRNKS CCCCCCCHHHHHHHHHHHCCCCEEHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCC RGRIAVITFSGAAGIVSTDFMNELDLDVAELSEATKIRLGRIFPEWMPVANPVDIWPAIE CCEEEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCHH QHSGTGLDIYSLAMEAALDDPGVDAVLVHAFSGYTRIRLDFDKISRQSRSSGKPVLLWLP CCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEHHHHHHHHCCCCCEEEEEEC GNRDDAFQVQIKARDCGVLVFHELYRAVSCLSILFQRTGTCWLPEGNQPVPTDELQNIPD CCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHCCCH DISDLLNNAGGSLDERLSKNILKSFGIPTVEETWIKDPRLCESKAISMGFPLVMKGLQTG HHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHCCCHHHHHHHHHC VVHKTEHGLVELNIVGPEEARQSFERLLQKMNGRGSVLMQKQLQGDVELIMGAIRDPQFG CEEECCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCHHHHHHHHCCCCCC PCVMIGIGGRMADLIEDSVFTVAPLSVKEALDAIGRLRTQTLLDGFRGSQPADRHVLASL CEEEEECCCHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH MVTLGHLMARYPRIQEIDINPILVSGSQAVAVDATVVLSNP HHHHHHHHHHCCCCEEECCCEEEEECCCEEEEEEEEEEECC >Mature Secondary Structure MHSFFNPQSIAVIGATPKTFKGGYAILKNLKTTFKGRIYPINPQYAEIEGLPCFPSIKDI CCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCCCEEECCCCCCCCHHHH PEAVDLAIIFIAAVHVPAALEQCAIKGVSGIMIESGGFAEADEKGKSLQDAIRSFVERTG HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHCC IRVWGPNCMGLVDGIRGHIFSFTDPKVLPFCLHPGPVSLIVQSGMLSAGFVIDILSHGIT CEEECCCHHHHHHHHHCCEEECCCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHCCCC GFSKVCSIGNKADIDESDVLSFLLEDPDTRCVGLYLESFVNGRRFMDLCRKSDKPVIVLK CHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEE GGRSRKGAEAAVSHTASLAGNYRVAAGALAQAGAYEARDFHQLVDFCRTLALYPPKRNKS CCCCCCCHHHHHHHHHHHCCCCEEHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCC RGRIAVITFSGAAGIVSTDFMNELDLDVAELSEATKIRLGRIFPEWMPVANPVDIWPAIE CCEEEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCHH QHSGTGLDIYSLAMEAALDDPGVDAVLVHAFSGYTRIRLDFDKISRQSRSSGKPVLLWLP CCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEHHHHHHHHCCCCCEEEEEEC GNRDDAFQVQIKARDCGVLVFHELYRAVSCLSILFQRTGTCWLPEGNQPVPTDELQNIPD CCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHCCCH DISDLLNNAGGSLDERLSKNILKSFGIPTVEETWIKDPRLCESKAISMGFPLVMKGLQTG HHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHCCCHHHHHHHHHC VVHKTEHGLVELNIVGPEEARQSFERLLQKMNGRGSVLMQKQLQGDVELIMGAIRDPQFG CEEECCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCHHHHHHHHCCCCCC PCVMIGIGGRMADLIEDSVFTVAPLSVKEALDAIGRLRTQTLLDGFRGSQPADRHVLASL CEEEEECCCHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH MVTLGHLMARYPRIQEIDINPILVSGSQAVAVDATVVLSNP HHHHHHHHHHCCCCEEECCCEEEEECCCEEEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]