| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is yjgR [H]
Identifier: 85859929
GI number: 85859929
Start: 2163581
End: 2165071
Strand: Direct
Name: yjgR [H]
Synonym: SYN_00674
Alternate gene names: 85859929
Gene position: 2163581-2165071 (Clockwise)
Preceding gene: 85859928
Following gene: 85859930
Centisome position: 68.05
GC content: 57.08
Gene sequence:
>1491_bases ATGAACCAGATACTTATAGGCAAGGGTGAGCAGCCTGTTCAATTGCTCGCCAGGTACGGCAACCGGCATGGTCTGATCGC GGGAGCCACCGGTACCGGCAAGACGATTTCTCTCATGGTACTGGCAGAGGGCTTCTCACGCATGGGTGTACCGGTATTCA TGGCTGACGTGAAAGGCGATGTCGCCGGCCTGGCAATGGCCGGCACCCCCAACGAAAAGATCCAGCAGCGTGTTAAAGAG ATCGGGATTGATGGTTACGCCAGCGAGGCGAATCCGGTTTTGTTCTGGGATGTGTTCGGCAAGAATGGCCATCGGGTGCG CACCACGATCAGTGAAATCGGTCCGAACCTGCTGGGACGGATACTGGAAATTAACGATACCCAGACCGGCATGCTTGAGA TCGCCTTCAAGCTGGCGGACGATCAGGGTTTACTTCTGCTTGACCTCGACGACCTGCGTGCCTTGCTTGCTTTCGTCGCT GAAAATCGCAAGGAGATTTCGACACAGTATGGCCTGGTAAGTTCACAATCCGTGGCTGCTGTCCAACGTGCCCTGTTGAC GCTTCAGCGGGAAGGAGGGGAAGACCTCTTCGGCGAGCCGGCCCTGGAACTCAATGATTTGATGCGTACCGATCTCAACG GCCGCGGTATCATCAACATTCTAGTTGCAGACCAGCTCATTTTAAGACCACGATTGTACTCGAGCTTCCTCCTGTGGCTG CTGTCAGAGCTGTTCGAGAACCTGCCCGAGGTAGGTGACCTCGAAAAGCCCAAGCTTGTGTTCTTCTTCGATGAGGCCCA CCTGCTCTTTGACGATGCGCCACCGATGATGCGTCAGCGAGTGGAACAGGTCGTGCGCATCATCCGATCCAAGGGCGTCG GGGTCTACTTCTGCTCGCAATTCCCCGACGACGTGCCCAACGAGATCCTGGGCCAGCTCGGAAATCGCATCCAGCACGCA CTTCGGGCCTACACTCCGCGTGACCAGAAGGCAGTGAAAACTGCCGCGGAAACCTTCGTTGCGAACCCGAAACTCAACGT CGCGGAAGTCATATCACAACTCGGTGTTGGTGAAGCTCTGGTCTCCACTCTCCAGGAGAAGGGTGTTCCGATGCCGGTGG AGCGAACGTTGATCTGTCCACCGCGCTGCCGGATGGGCGCTGTCACGCCTGAAGAGCGCTTGGCCGTGCGTTCGCGCAGC CCGCTGGGAAACAAGTACGACTCGTCGGTGAACAGGGAATCTGCCTACGAGATCCTGAAACGGCGGACATTGGAAAGGGA AACAGCAGAGGCGGAATCAGATCAGGCGCAGAAGGAGAAACCGTCTGAAGGTCAGGGGGGGGTTAATGAATGGCTGTGGG GAACAAAACGTCGGCAGGGCATGGTTGAAACCATGGCTAAACAGGCCGCGCGTACCGTAGGAAGCCAGATCGGCCGCCAG ATCCTGCGCGGTGTATTAGGCGTTATATTGGGCGAATCACGCCGTCGCTAG
Upstream 100 bases:
>100_bases CTCAATTCGCATTCCGATTTCACTATGGGCGACAACAGGCTCCTATACCTTGGACAGCAAGTGGGCAGCCGACACTGTAT CGTCACAGAGGAGGTAACGC
Downstream 100 bases:
>100_bases TCTCCGCTCACTTTATCGACGCAAAGAGGCAGCCGAAAGGAAGCAAACCCAGCTGATTTTATCCATTTGGTTATTCCAAT TGTCCTTGAATATAAATTGA
Product: ATPase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 496; Mature: 496
Protein sequence:
>496_residues MNQILIGKGEQPVQLLARYGNRHGLIAGATGTGKTISLMVLAEGFSRMGVPVFMADVKGDVAGLAMAGTPNEKIQQRVKE IGIDGYASEANPVLFWDVFGKNGHRVRTTISEIGPNLLGRILEINDTQTGMLEIAFKLADDQGLLLLDLDDLRALLAFVA ENRKEISTQYGLVSSQSVAAVQRALLTLQREGGEDLFGEPALELNDLMRTDLNGRGIINILVADQLILRPRLYSSFLLWL LSELFENLPEVGDLEKPKLVFFFDEAHLLFDDAPPMMRQRVEQVVRIIRSKGVGVYFCSQFPDDVPNEILGQLGNRIQHA LRAYTPRDQKAVKTAAETFVANPKLNVAEVISQLGVGEALVSTLQEKGVPMPVERTLICPPRCRMGAVTPEERLAVRSRS PLGNKYDSSVNRESAYEILKRRTLERETAEAESDQAQKEKPSEGQGGVNEWLWGTKRRQGMVETMAKQAARTVGSQIGRQ ILRGVLGVILGESRRR
Sequences:
>Translated_496_residues MNQILIGKGEQPVQLLARYGNRHGLIAGATGTGKTISLMVLAEGFSRMGVPVFMADVKGDVAGLAMAGTPNEKIQQRVKE IGIDGYASEANPVLFWDVFGKNGHRVRTTISEIGPNLLGRILEINDTQTGMLEIAFKLADDQGLLLLDLDDLRALLAFVA ENRKEISTQYGLVSSQSVAAVQRALLTLQREGGEDLFGEPALELNDLMRTDLNGRGIINILVADQLILRPRLYSSFLLWL LSELFENLPEVGDLEKPKLVFFFDEAHLLFDDAPPMMRQRVEQVVRIIRSKGVGVYFCSQFPDDVPNEILGQLGNRIQHA LRAYTPRDQKAVKTAAETFVANPKLNVAEVISQLGVGEALVSTLQEKGVPMPVERTLICPPRCRMGAVTPEERLAVRSRS PLGNKYDSSVNRESAYEILKRRTLERETAEAESDQAQKEKPSEGQGGVNEWLWGTKRRQGMVETMAKQAARTVGSQIGRQ ILRGVLGVILGESRRR >Mature_496_residues MNQILIGKGEQPVQLLARYGNRHGLIAGATGTGKTISLMVLAEGFSRMGVPVFMADVKGDVAGLAMAGTPNEKIQQRVKE IGIDGYASEANPVLFWDVFGKNGHRVRTTISEIGPNLLGRILEINDTQTGMLEIAFKLADDQGLLLLDLDDLRALLAFVA ENRKEISTQYGLVSSQSVAAVQRALLTLQREGGEDLFGEPALELNDLMRTDLNGRGIINILVADQLILRPRLYSSFLLWL LSELFENLPEVGDLEKPKLVFFFDEAHLLFDDAPPMMRQRVEQVVRIIRSKGVGVYFCSQFPDDVPNEILGQLGNRIQHA LRAYTPRDQKAVKTAAETFVANPKLNVAEVISQLGVGEALVSTLQEKGVPMPVERTLICPPRCRMGAVTPEERLAVRSRS PLGNKYDSSVNRESAYEILKRRTLERETAEAESDQAQKEKPSEGQGGVNEWLWGTKRRQGMVETMAKQAARTVGSQIGRQ ILRGVLGVILGESRRR
Specific function: Unknown
COG id: COG0433
COG function: function code R; Predicted ATPase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli yjiB [H]
Homologues:
Organism=Escherichia coli, GI1790714, Length=495, Percent_Identity=53.7373737373737, Blast_Score=519, Evalue=1e-148,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008571 [H]
Pfam domain/function: PF05872 DUF853 [H]
EC number: NA
Molecular weight: Translated: 54795; Mature: 54795
Theoretical pI: Translated: 6.95; Mature: 6.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNQILIGKGEQPVQLLARYGNRHGLIAGATGTGKTISLMVLAEGFSRMGVPVFMADVKGD CCCEEECCCCCHHHHHHHHCCCCCEEEECCCCCCEEEEEEEHHHHHHCCCCEEEEECCCC VAGLAMAGTPNEKIQQRVKEIGIDGYASEANPVLFWDVFGKNGHRVRTTISEIGPNLLGR HHCEEECCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHCHHHHHH ILEINDTQTGMLEIAFKLADDQGLLLLDLDDLRALLAFVAENRKEISTQYGLVSSQSVAA HHCCCCCCCCCEEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH VQRALLTLQREGGEDLFGEPALELNDLMRTDLNGRGIINILVADQLILRPRLYSSFLLWL HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHH LSELFENLPEVGDLEKPKLVFFFDEAHLLFDDAPPMMRQRVEQVVRIIRSKGVGVYFCSQ HHHHHHHCCCCCCCCCCEEEEEECCCEEEECCCCHHHHHHHHHHHHHHHHCCCCEEECCC FPDDVPNEILGQLGNRIQHALRAYTPRDQKAVKTAAETFVANPKLNVAEVISQLGVGEAL CCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHH VSTLQEKGVPMPVERTLICPPRCRMGAVTPEERLAVRSRSPLGNKYDSSVNRESAYEILK HHHHHHCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH RRTLERETAEAESDQAQKEKPSEGQGGVNEWLWGTKRRQGMVETMAKQAARTVGSQIGRQ HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHH ILRGVLGVILGESRRR HHHHHHHHHHCCCCCC >Mature Secondary Structure MNQILIGKGEQPVQLLARYGNRHGLIAGATGTGKTISLMVLAEGFSRMGVPVFMADVKGD CCCEEECCCCCHHHHHHHHCCCCCEEEECCCCCCEEEEEEEHHHHHHCCCCEEEEECCCC VAGLAMAGTPNEKIQQRVKEIGIDGYASEANPVLFWDVFGKNGHRVRTTISEIGPNLLGR HHCEEECCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHCHHHHHH ILEINDTQTGMLEIAFKLADDQGLLLLDLDDLRALLAFVAENRKEISTQYGLVSSQSVAA HHCCCCCCCCCEEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH VQRALLTLQREGGEDLFGEPALELNDLMRTDLNGRGIINILVADQLILRPRLYSSFLLWL HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHH LSELFENLPEVGDLEKPKLVFFFDEAHLLFDDAPPMMRQRVEQVVRIIRSKGVGVYFCSQ HHHHHHHCCCCCCCCCCEEEEEECCCEEEECCCCHHHHHHHHHHHHHHHHCCCCEEECCC FPDDVPNEILGQLGNRIQHALRAYTPRDQKAVKTAAETFVANPKLNVAEVISQLGVGEAL CCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHH VSTLQEKGVPMPVERTLICPPRCRMGAVTPEERLAVRSRSPLGNKYDSSVNRESAYEILK HHHHHHCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH RRTLERETAEAESDQAQKEKPSEGQGGVNEWLWGTKRRQGMVETMAKQAARTVGSQIGRQ HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHH ILRGVLGVILGESRRR HHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503 [H]