| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is 85859771
Identifier: 85859771
GI number: 85859771
Start: 2005717
End: 2006217
Strand: Direct
Name: 85859771
Synonym: SYN_02871
Alternate gene names: NA
Gene position: 2005717-2006217 (Clockwise)
Preceding gene: 85859770
Following gene: 85859774
Centisome position: 63.09
GC content: 53.89
Gene sequence:
>501_bases ATGACCGGCCACACCGGCACATCGTTTCCGGAATCCCGGCAGTTTAAAGATCCGGAAAAGCAAACTCGGCAGAAAGGAGC AATTTTAACATTGGATGAGGAAGCGATCAGAAACAGAACACAGGAAACCGCGAAAAAACTCTTCGGCAAAGGGGTCAAGA TGGATCCACCTTACCTGACATGGAAAGCTTTCGACCGTGAGCTGGCCAATGATTTCTCCATGTTTATCACGGGAAATCTG TACTCCCGTACGGTGCTGACCCTGCCGGAGCGGCAGATGGCCGCCTGCGCCATTTTAGGAGCAATTCGGGCGACGGACGA ACTGAAGCTCCATGTGAATGCAGCTCTGAATGTGGGATGCGACCCCAGGAAACTGACAGAGATTTTCTTTCAGATGGCCC CCTACGCGGGCATGCCCGCTGTCAACGAGGCGCTTGCCGTCTTCCGGGAAGTTCTTGAAGAACGGGAAGAATGGCCAATT GCCCGGGAAACAGCCCCCTGA
Upstream 100 bases:
>100_bases GCCGCCGCGAAGGCGAAAGCGCGTATGACAAGGCGCAGAAAAAAGACGGATATCAGCACATCTACCTTCAGGATAAGGAC AGAGACCTGTACCTGGTTAA
Downstream 100 bases:
>100_bases GCAAAGCATCCCCTCATACATCAGGAGGCGCGTCAATTCTTCAGCCTTCAACAACAGCTTCACGGAAAGGTCTTTTGATG GAGACGGCCAGGGGAGAAAC
Product: gamma-carboxymuconolactone decarboxylase
Products: 4,5-dihydro-5-oxofuran-2-acetate; CO2
Alternate protein names: Gamma-Carboxymuconolactone Decarboxylase; 4-Carboxymuconolactone Decarboxylase; Carboxymuconolactone Decarboxylase Family Protein; Carboxymuconolactone Decarboxylase Protein
Number of amino acids: Translated: 166; Mature: 165
Protein sequence:
>166_residues MTGHTGTSFPESRQFKDPEKQTRQKGAILTLDEEAIRNRTQETAKKLFGKGVKMDPPYLTWKAFDRELANDFSMFITGNL YSRTVLTLPERQMAACAILGAIRATDELKLHVNAALNVGCDPRKLTEIFFQMAPYAGMPAVNEALAVFREVLEEREEWPI ARETAP
Sequences:
>Translated_166_residues MTGHTGTSFPESRQFKDPEKQTRQKGAILTLDEEAIRNRTQETAKKLFGKGVKMDPPYLTWKAFDRELANDFSMFITGNL YSRTVLTLPERQMAACAILGAIRATDELKLHVNAALNVGCDPRKLTEIFFQMAPYAGMPAVNEALAVFREVLEEREEWPI ARETAP >Mature_165_residues TGHTGTSFPESRQFKDPEKQTRQKGAILTLDEEAIRNRTQETAKKLFGKGVKMDPPYLTWKAFDRELANDFSMFITGNLY SRTVLTLPERQMAACAILGAIRATDELKLHVNAALNVGCDPRKLTEIFFQMAPYAGMPAVNEALAVFREVLEEREEWPIA RETAP
Specific function: Unknown
COG id: COG0599
COG function: function code S; Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 4.1.1.44
Molecular weight: Translated: 18736; Mature: 18604
Theoretical pI: Translated: 6.54; Mature: 6.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGHTGTSFPESRQFKDPEKQTRQKGAILTLDEEAIRNRTQETAKKLFGKGVKMDPPYLT CCCCCCCCCCCCCCCCCHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHCCCCCCCCCEEH WKAFDRELANDFSMFITGNLYSRTVLTLPERQMAACAILGAIRATDELKLHVNAALNVGC HHHHHHHHHCCHHEEEECCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEEEECCC DPRKLTEIFFQMAPYAGMPAVNEALAVFREVLEEREEWPIARETAP CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure TGHTGTSFPESRQFKDPEKQTRQKGAILTLDEEAIRNRTQETAKKLFGKGVKMDPPYLT CCCCCCCCCCCCCCCCHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHCCCCCCCCCEEH WKAFDRELANDFSMFITGNLYSRTVLTLPERQMAACAILGAIRATDELKLHVNAALNVGC HHHHHHHHHCCHHEEEECCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEEEECCC DPRKLTEIFFQMAPYAGMPAVNEALAVFREVLEEREEWPIARETAP CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: 2-carboxy-2,5-dihydro-5-oxofuran-2-acetate
Specific reaction: 2-carboxy-2,5-dihydro-5-oxofuran-2-acetate = 4,5-dihydro-5-oxofuran-2-acetate + CO2
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA