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The map label for this gene is cydA [H]

Identifier: 85859710

GI number: 85859710

Start: 1942083

End: 1943420

Strand: Direct

Name: cydA [H]

Synonym: SYN_01976

Alternate gene names: 85859710

Gene position: 1942083-1943420 (Clockwise)

Preceding gene: 85859709

Following gene: 85859711

Centisome position: 61.09

GC content: 56.05

Gene sequence:

>1338_bases
ATGGATGTTTTAACGCTCAGTCGATTGCAGTTCGCCATGACGGCGGGTTTTCATTTCCTTTTTGTCCCCCTGACCCTGGG
CCTCTCCATCCTGGTCGCCTTCATGGAGAGCCGGTATGTCTTCACCGGAAACCCCTTGTATCTGCGCATGACGCGCTTCT
GGGGCAAACTCTTCCTGATTAATTTTGCCGTCGGTCTCGTCACCGGCCTGACCCTGGAATTCCAGTTCGGCATGAACTGG
GCATCCTATTCCCGTTTCGTGGGCGACATCTTCGGCACCCCCCTGGCCATCGAGGCAACTGCCGCCTTTTTTCTGGAATC
CACCTTTATCGGCTTGTGGATTTTCGGCTGGAAACGTCTTTCTCCCCGTCTGCATGCCTTTACGATCTGGGTGGTCGCCT
TCGCCACCAACTTTTCCGCCCTCTGGATTCTTCTCGCCAATGGCTGGATGCAGCACCCCGTCGGGTTCGTCCTCCGCAAC
GCGCGGGCTGAAATGGTTGACTTCCCTGCCCTGCTTACCAGCAGTTACGGCTGGCTCAAGTTTCTGCACACCATAACCGC
CGGCTACGTAACCGCCGCCTTTTTCGTTCTTGGCATTTCCGCCTGGCAGATCCTGAAAAAGCGGGAGGTTCCCCTTTTCA
AATCCTCTTTCCGGATCGCAGCCGTTTTCGGTCTGTTGAGTTCCATGGCAGTTGTCGGCATCGGCGATTTCCATGGAGCG
GAAGTCGCCCGCGTTCAGCCGGGGAAACTGGCCGCTATGGAGTCGCTCTGGGAAACGGAAAGCTCCGTCCCCTTTTACCT
TTTTGTACTGCCGGACGCAAAGAATGAACGCAACAGCATTGAGGCTGTCGGCATTCCCTACATGGTCAGCTTTCTCGCCT
ATCGGGACATTCATGCCGAACTCAAGGGTTTGAAGGAATTTCCCAGAGAAGATCGGCCTCCGGTCATGGAAACCTTCCTC
GGTTTCCGAATCATGGTCGCTCTAGGAGGACTCTTCATGCTTCTTGCCGCCATTGCCCTTTATCTGAGTGTCCGGAACCG
CCTTGAATCTTTACCCCGTTTCCTCTGGCTGATGGCGCTCTCACTTCCCCTTCCCTATCTGGCCGGCCAGGCGGGATGGG
TCGTGGCTGAGGTGGGCCGCCAGCCGTGGATCGTTTACGGCCTGCTGAGAACGAAGGATGCCGTCTCACCCAATATAGCA
GGCAGTCAGGTGTTGTTTTCCCTCATTGGTCTGGGCCTGCTTTATACCTTTCTCGGGATTGTCGGGCTGTGTCTGATGAT
CTACCACATCAGGAAAGGCCCGGAACCTGAAGCGACCGAGCCAGGCGCCTCTTCTTAA

Upstream 100 bases:

>100_bases
CATTTCTCACTTTCCCCTGCGATAATCATTGCGTTTGAACGTTGGCGTCTCAAGGGTAAAGTTCGGCATGTGACTGTTCA
ATGCATGAGGAGAAGACTCT

Downstream 100 bases:

>100_bases
ACAGCAGAACGGGAGGTACGACATCATGGATTATCAGCTGATCTGGTTTGTTCTCTGGGGACTTCTCTGGGCCGCATATT
TTGCCACCGGCGGTTTCGAT

Product: cytochrome d ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 445; Mature: 445

Protein sequence:

>445_residues
MDVLTLSRLQFAMTAGFHFLFVPLTLGLSILVAFMESRYVFTGNPLYLRMTRFWGKLFLINFAVGLVTGLTLEFQFGMNW
ASYSRFVGDIFGTPLAIEATAAFFLESTFIGLWIFGWKRLSPRLHAFTIWVVAFATNFSALWILLANGWMQHPVGFVLRN
ARAEMVDFPALLTSSYGWLKFLHTITAGYVTAAFFVLGISAWQILKKREVPLFKSSFRIAAVFGLLSSMAVVGIGDFHGA
EVARVQPGKLAAMESLWETESSVPFYLFVLPDAKNERNSIEAVGIPYMVSFLAYRDIHAELKGLKEFPREDRPPVMETFL
GFRIMVALGGLFMLLAAIALYLSVRNRLESLPRFLWLMALSLPLPYLAGQAGWVVAEVGRQPWIVYGLLRTKDAVSPNIA
GSQVLFSLIGLGLLYTFLGIVGLCLMIYHIRKGPEPEATEPGASS

Sequences:

>Translated_445_residues
MDVLTLSRLQFAMTAGFHFLFVPLTLGLSILVAFMESRYVFTGNPLYLRMTRFWGKLFLINFAVGLVTGLTLEFQFGMNW
ASYSRFVGDIFGTPLAIEATAAFFLESTFIGLWIFGWKRLSPRLHAFTIWVVAFATNFSALWILLANGWMQHPVGFVLRN
ARAEMVDFPALLTSSYGWLKFLHTITAGYVTAAFFVLGISAWQILKKREVPLFKSSFRIAAVFGLLSSMAVVGIGDFHGA
EVARVQPGKLAAMESLWETESSVPFYLFVLPDAKNERNSIEAVGIPYMVSFLAYRDIHAELKGLKEFPREDRPPVMETFL
GFRIMVALGGLFMLLAAIALYLSVRNRLESLPRFLWLMALSLPLPYLAGQAGWVVAEVGRQPWIVYGLLRTKDAVSPNIA
GSQVLFSLIGLGLLYTFLGIVGLCLMIYHIRKGPEPEATEPGASS
>Mature_445_residues
MDVLTLSRLQFAMTAGFHFLFVPLTLGLSILVAFMESRYVFTGNPLYLRMTRFWGKLFLINFAVGLVTGLTLEFQFGMNW
ASYSRFVGDIFGTPLAIEATAAFFLESTFIGLWIFGWKRLSPRLHAFTIWVVAFATNFSALWILLANGWMQHPVGFVLRN
ARAEMVDFPALLTSSYGWLKFLHTITAGYVTAAFFVLGISAWQILKKREVPLFKSSFRIAAVFGLLSSMAVVGIGDFHGA
EVARVQPGKLAAMESLWETESSVPFYLFVLPDAKNERNSIEAVGIPYMVSFLAYRDIHAELKGLKEFPREDRPPVMETFL
GFRIMVALGGLFMLLAAIALYLSVRNRLESLPRFLWLMALSLPLPYLAGQAGWVVAEVGRQPWIVYGLLRTKDAVSPNIA
GSQVLFSLIGLGLLYTFLGIVGLCLMIYHIRKGPEPEATEPGASS

Specific function: Cytochrome Oxidase Subunit. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787212, Length=508, Percent_Identity=43.8976377952756, Blast_Score=358, Evalue=1e-100,
Organism=Escherichia coli, GI87081779, Length=317, Percent_Identity=52.3659305993691, Blast_Score=327, Evalue=1e-90,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 49638; Mature: 49638

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVLTLSRLQFAMTAGFHFLFVPLTLGLSILVAFMESRYVFTGNPLYLRMTRFWGKLFLI
CCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEEEHHHHHHHHHHH
NFAVGLVTGLTLEFQFGMNWASYSRFVGDIFGTPLAIEATAAFFLESTFIGLWIFGWKRL
HHHHHHHHCCEEEEEECCCHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHC
SPRLHAFTIWVVAFATNFSALWILLANGWMQHPVGFVLRNARAEMVDFPALLTSSYGWLK
CCCHHHHHHHHHHHHCCHHHHHHHHHCCHHHCCHHHHHHHCHHHHHHHHHHHHCCCHHHH
FLHTITAGYVTAAFFVLGISAWQILKKREVPLFKSSFRIAAVFGLLSSMAVVGIGDFHGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
EVARVQPGKLAAMESLWETESSVPFYLFVLPDAKNERNSIEAVGIPYMVSFLAYRDIHAE
CEEEECCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHH
LKGLKEFPREDRPPVMETFLGFRIMVALGGLFMLLAAIALYLSVRNRLESLPRFLWLMAL
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLPLPYLAGQAGWVVAEVGRQPWIVYGLLRTKDAVSPNIAGSQVLFSLIGLGLLYTFLGI
HCCCHHHCCCCCEEEECCCCCCEEEEEEHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
VGLCLMIYHIRKGPEPEATEPGASS
HHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MDVLTLSRLQFAMTAGFHFLFVPLTLGLSILVAFMESRYVFTGNPLYLRMTRFWGKLFLI
CCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEEEHHHHHHHHHHH
NFAVGLVTGLTLEFQFGMNWASYSRFVGDIFGTPLAIEATAAFFLESTFIGLWIFGWKRL
HHHHHHHHCCEEEEEECCCHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHC
SPRLHAFTIWVVAFATNFSALWILLANGWMQHPVGFVLRNARAEMVDFPALLTSSYGWLK
CCCHHHHHHHHHHHHCCHHHHHHHHHCCHHHCCHHHHHHHCHHHHHHHHHHHHCCCHHHH
FLHTITAGYVTAAFFVLGISAWQILKKREVPLFKSSFRIAAVFGLLSSMAVVGIGDFHGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
EVARVQPGKLAAMESLWETESSVPFYLFVLPDAKNERNSIEAVGIPYMVSFLAYRDIHAE
CEEEECCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHH
LKGLKEFPREDRPPVMETFLGFRIMVALGGLFMLLAAIALYLSVRNRLESLPRFLWLMAL
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLPLPYLAGQAGWVVAEVGRQPWIVYGLLRTKDAVSPNIAGSQVLFSLIGLGLLYTFLGI
HCCCHHHCCCCCEEEECCCCCCEEEEEEHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
VGLCLMIYHIRKGPEPEATEPGASS
HHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]