| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is mtaD2
Identifier: 85859696
GI number: 85859696
Start: 1925619
End: 1926956
Strand: Direct
Name: mtaD2
Synonym: SYN_01991
Alternate gene names: 85859696
Gene position: 1925619-1926956 (Clockwise)
Preceding gene: 85859692
Following gene: 85859701
Centisome position: 60.57
GC content: 56.05
Gene sequence:
>1338_bases ATGGCAAAAACAGAGCTTGATCTATTGATTCGCGGCAGCGTCCTGTTGACGATGCGCGAGGAGGAGGCTGTCATTGAAAA CCCCGTCGTCGGCATACGGAACGGAAAAATCGTTCTGATCATGCAGAACGATCTCTTTACTGAGGAAGAATACACAGCCA GAAAGGTCCTGGATAGAAGCAATACCCTGATCATGCCCGGACTCGTGAATACGCACACACACCTGGCCATGTCGTGCTTC CGTGGACTGGCCGACGATCTCCCCCTGATGGCCTGGCTTCACGAATACATTTTCCCCGCAGAAGCGCGGCACGTCAATCC GGAAATGGTTTACGCGGGTTCCCTGCTGGCCATGGCGGAAATGATTCTGTCCGGCACAACGACCTTCTGCGACGGCTACT TCTTTGTCGATCAGGTCGCCCGGGCGGCAAAGGATGCCGGGATGCGGGCTGTTGTCTGCCAGGGATTCATCGATTTTCCC ACGCCGGACACATCCGACCCGTCCCGGCAGATGGAAACCGCGGAACGGTTTATTGGAACGTGGAAAGACGCTTCACCTCT GATTCAGCCTGCCCTCTTCTGTCATTCACCCTACACCTGCTCCCCGGAAACACTGGTCCGCATCAAAGAGGCGGCCCGAA GGGAAAAAATCCTCTACGTTCTGCATCTTTCCGAAACCCGTGAGGAAGTTTCCCTGATCCAGGATTGTTATGGGAAACGG CCTGCTTTACATCTCCACAACCTGGACGTTCTTGATCCGGATACCCTTGCCGTGCACTGCGTATGGCTCGACGAGGAAGA GCAGGGCGTCCTGGCGGACTGCGGCGTCCGGGTTTCTCATACCCCGCAAAGCAACATGAAACTGGCGGCGGGCATCGCTC CTGTCCCGGCCATGCAGGCCATGGGCATTTCCGTATCTCTGGGAACTGACGGCTCAGCCAGCAATAACGATCTGGACCTT TTCCGGGAAATGGATTCGACGGCAAAGATCCACAAGGTCGCCACTGGAAACCCGGCCGTCATGGATGCCGCAAGGGTCGT CCGGATGGCCACTTCCGAAGGGGCCGGAGCCCTGGGGTTGCAGGACCGGATTGGGTCTCTTGAAGTCGGCAAGGCTGCGG ATCTCATCATCCTCGATCTGAATCAACCTCATCTCACGCCGATGTACCATCCCTTTTCTCATCTCGTCTACGCGGCCTCC GGCGCGGATGTGCTCACCACCGTCATTGACGGCAACGTGGTCATGGAAAATCGGAAAATCCTCTCTTTCGACCTGGAGGC AATCATGAGGGAAGTCGAGAAAATCGCGGAGAAGATAAGAAAAAGCTGCAGGAAATAA
Upstream 100 bases:
>100_bases CAATAAAAAATCAGCAGAAAGACACGATTGACAAAAAAATTGAACCCATATTTTTAAGTGCAGGGGATATCTTCAGATTT TCCCGACGAGGTCATTTTTC
Downstream 100 bases:
>100_bases CACCATCATATCATGCCGCATTCCATAAAGAAAAAAGTGAACAGAGATGCGGCAATACACAGCACCGATGGATCGTGCGT TGACATGCAGGCAATAAAGC
Product: chlorohydrolase/deaminase family protein
Products: NA
Alternate protein names: MTA/SAH deaminase 2
Number of amino acids: Translated: 445; Mature: 444
Protein sequence:
>445_residues MAKTELDLLIRGSVLLTMREEEAVIENPVVGIRNGKIVLIMQNDLFTEEEYTARKVLDRSNTLIMPGLVNTHTHLAMSCF RGLADDLPLMAWLHEYIFPAEARHVNPEMVYAGSLLAMAEMILSGTTTFCDGYFFVDQVARAAKDAGMRAVVCQGFIDFP TPDTSDPSRQMETAERFIGTWKDASPLIQPALFCHSPYTCSPETLVRIKEAARREKILYVLHLSETREEVSLIQDCYGKR PALHLHNLDVLDPDTLAVHCVWLDEEEQGVLADCGVRVSHTPQSNMKLAAGIAPVPAMQAMGISVSLGTDGSASNNDLDL FREMDSTAKIHKVATGNPAVMDAARVVRMATSEGAGALGLQDRIGSLEVGKAADLIILDLNQPHLTPMYHPFSHLVYAAS GADVLTTVIDGNVVMENRKILSFDLEAIMREVEKIAEKIRKSCRK
Sequences:
>Translated_445_residues MAKTELDLLIRGSVLLTMREEEAVIENPVVGIRNGKIVLIMQNDLFTEEEYTARKVLDRSNTLIMPGLVNTHTHLAMSCF RGLADDLPLMAWLHEYIFPAEARHVNPEMVYAGSLLAMAEMILSGTTTFCDGYFFVDQVARAAKDAGMRAVVCQGFIDFP TPDTSDPSRQMETAERFIGTWKDASPLIQPALFCHSPYTCSPETLVRIKEAARREKILYVLHLSETREEVSLIQDCYGKR PALHLHNLDVLDPDTLAVHCVWLDEEEQGVLADCGVRVSHTPQSNMKLAAGIAPVPAMQAMGISVSLGTDGSASNNDLDL FREMDSTAKIHKVATGNPAVMDAARVVRMATSEGAGALGLQDRIGSLEVGKAADLIILDLNQPHLTPMYHPFSHLVYAAS GADVLTTVIDGNVVMENRKILSFDLEAIMREVEKIAEKIRKSCRK >Mature_444_residues AKTELDLLIRGSVLLTMREEEAVIENPVVGIRNGKIVLIMQNDLFTEEEYTARKVLDRSNTLIMPGLVNTHTHLAMSCFR GLADDLPLMAWLHEYIFPAEARHVNPEMVYAGSLLAMAEMILSGTTTFCDGYFFVDQVARAAKDAGMRAVVCQGFIDFPT PDTSDPSRQMETAERFIGTWKDASPLIQPALFCHSPYTCSPETLVRIKEAARREKILYVLHLSETREEVSLIQDCYGKRP ALHLHNLDVLDPDTLAVHCVWLDEEEQGVLADCGVRVSHTPQSNMKLAAGIAPVPAMQAMGISVSLGTDGSASNNDLDLF REMDSTAKIHKVATGNPAVMDAARVVRMATSEGAGALGLQDRIGSLEVGKAADLIILDLNQPHLTPMYHPFSHLVYAASG ADVLTTVIDGNVVMENRKILSFDLEAIMREVEKIAEKIRKSCRK
Specific function: Catalyzes the deamination of 5-methylthioadenosine and S-adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine
COG id: COG0402
COG function: function code FR; Cytosine deaminase and related metal-dependent hydrolases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the MTA/SAH deaminase family
Homologues:
Organism=Homo sapiens, GI4758426, Length=382, Percent_Identity=28.5340314136126, Blast_Score=133, Evalue=3e-31, Organism=Escherichia coli, GI1789249, Length=442, Percent_Identity=25.1131221719457, Blast_Score=112, Evalue=6e-26, Organism=Escherichia coli, GI87082177, Length=458, Percent_Identity=24.6724890829694, Blast_Score=100, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17540282, Length=361, Percent_Identity=26.8698060941828, Blast_Score=91, Evalue=1e-18, Organism=Saccharomyces cerevisiae, GI6319963, Length=392, Percent_Identity=25.5102040816327, Blast_Score=115, Evalue=1e-26, Organism=Drosophila melanogaster, GI24643849, Length=352, Percent_Identity=28.4090909090909, Blast_Score=126, Evalue=3e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): MTAD2_SYNAS (Q2LUH4)
Other databases:
- EMBL: CP000252 - RefSeq: YP_461898.1 - ProteinModelPortal: Q2LUH4 - SMR: Q2LUH4 - STRING: Q2LUH4 - GeneID: 3882630 - GenomeReviews: CP000252_GR - KEGG: sat:SYN_01991 - NMPDR: fig|56780.10.peg.1838 - eggNOG: COG0402 - HOGENOM: HBG668170 - OMA: HTHIHET - PhylomeDB: Q2LUH4 - ProtClustDB: CLSK771790 - BioCyc: SACI56780:SYN_01991-MONOMER - HAMAP: MF_01281 - InterPro: IPR006680 - InterPro: IPR011059
Pfam domain/function: PF01979 Amidohydro_1; SSF51338 Metalo_hydrolase
EC number: =3.5.4.28
Molecular weight: Translated: 49006; Mature: 48875
Theoretical pI: Translated: 5.10; Mature: 5.10
Prosite motif: NA
Important sites: BINDING 101-101 BINDING 195-195 BINDING 225-225 BINDING 310-310
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 6.5 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 6.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKTELDLLIRGSVLLTMREEEAVIENPVVGIRNGKIVLIMQNDLFTEEEYTARKVLDRS CCCCCEEEEEECEEEEEEECCHHHHCCCCEEECCCEEEEEEECCCCCCHHHHHHHHHCCC NTLIMPGLVNTHTHLAMSCFRGLADDLPLMAWLHEYIFPAEARHVNPEMVYAGSLLAMAE CCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHH MILSGTTTFCDGYFFVDQVARAAKDAGMRAVVCQGFIDFPTPDTSDPSRQMETAERFIGT HHHCCCCHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHC WKDASPLIQPALFCHSPYTCSPETLVRIKEAARREKILYVLHLSETREEVSLIQDCYGKR CCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCEEEEEEEECHHHHHHHHHHHHHCCC PALHLHNLDVLDPDTLAVHCVWLDEEEQGVLADCGVRVSHTPQSNMKLAAGIAPVPAMQA CEEEECCCCCCCCCCEEEEEEEECCCCCCCHHHCCEEEECCCCCCCEEEECCCCCCCHHH MGISVSLGTDGSASNNDLDLFREMDSTAKIHKVATGNPAVMDAARVVRMATSEGAGALGL CCEEEEECCCCCCCCCHHHHHHHHCCHHHEEEECCCCCHHHHHHHHHHHHCCCCCCCCCH QDRIGSLEVGKAADLIILDLNQPHLTPMYHPFSHLVYAASGADVLTTVIDGNVVMENRKI HHCCCCEECCCCCCEEEEECCCCCCCCCCCCHHHHEEECCCCCEEEEEECCCEEEECCEE LSFDLEAIMREVEKIAEKIRKSCRK EEHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure AKTELDLLIRGSVLLTMREEEAVIENPVVGIRNGKIVLIMQNDLFTEEEYTARKVLDRS CCCCEEEEEECEEEEEEECCHHHHCCCCEEECCCEEEEEEECCCCCCHHHHHHHHHCCC NTLIMPGLVNTHTHLAMSCFRGLADDLPLMAWLHEYIFPAEARHVNPEMVYAGSLLAMAE CCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHH MILSGTTTFCDGYFFVDQVARAAKDAGMRAVVCQGFIDFPTPDTSDPSRQMETAERFIGT HHHCCCCHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHC WKDASPLIQPALFCHSPYTCSPETLVRIKEAARREKILYVLHLSETREEVSLIQDCYGKR CCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCEEEEEEEECHHHHHHHHHHHHHCCC PALHLHNLDVLDPDTLAVHCVWLDEEEQGVLADCGVRVSHTPQSNMKLAAGIAPVPAMQA CEEEECCCCCCCCCCEEEEEEEECCCCCCCHHHCCEEEECCCCCCCEEEECCCCCCCHHH MGISVSLGTDGSASNNDLDLFREMDSTAKIHKVATGNPAVMDAARVVRMATSEGAGALGL CCEEEEECCCCCCCCCHHHHHHHHCCHHHEEEECCCCCHHHHHHHHHHHHCCCCCCCCCH QDRIGSLEVGKAADLIILDLNQPHLTPMYHPFSHLVYAASGADVLTTVIDGNVVMENRKI HHCCCCEECCCCCCEEEEECCCCCCCCCCCCHHHHEEECCCCCEEEEEECCCEEEECCEE LSFDLEAIMREVEKIAEKIRKSCRK EEHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA