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The map label for this gene is rlpA [C]

Identifier: 85859620

GI number: 85859620

Start: 1850245

End: 1850697

Strand: Direct

Name: rlpA [C]

Synonym: SYN_01997

Alternate gene names: 85859620

Gene position: 1850245-1850697 (Clockwise)

Preceding gene: 85859619

Following gene: 85859626

Centisome position: 58.2

GC content: 46.36

Gene sequence:

>453_bases
GTGATGCATTTCAGAAATCGAATAAGCAGGATAGCGCGCTGTCTTTTGGCCTTTCAGATTGTTTTTCTTTTCGCGGCACA
CCCACTTCAGGCGGAAGATACATCCGAACTGAAAACAGATCCAATAAATCAGAAGGATATTTCCGATCTTCAAAAACCGG
AAGGAACGGTCGGAAGAGCATACTATTACAGAAAGAGCCTCAAGAACAAAAAAACGAGTTCGGGAGCGATATACTGTCCG
CATAAGCTGACTGCGGCTCATCCGACCCTTCCCCTTGGTAAAAAGGTCAAAGTCATCAACATCGGGAACAAAAAGTCCGT
GGTCGTGACGGTCAATGATCGCTGCCGAAAACACCATTTTGAATTCATTGATTTATCTCAGGCCGCGGCGCGTGCGCTGG
GTTTTTTTGGCAAGGGAATGGCGATGGTGCAAATCATTCCCTTCGAAGAATAG

Upstream 100 bases:

>100_bases
TGGGGAAAAGCAAGTCTTTACGCAAAGGAATATTCTACGATCTCGACGTAATATAAAGATCTTTCAAACCGACTGCTCTG
AACTGTGCTGAAAGGAGTTC

Downstream 100 bases:

>100_bases
CCCACTCACCGCCGGGAAGCAATATTCACCGAAGTTAAGCAAGTGGACTGTGATCTCTCGCGCGCCGTTATGATGACATC
AGGGATTCAGCCCCCGTTTT

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MMHFRNRISRIARCLLAFQIVFLFAAHPLQAEDTSELKTDPINQKDISDLQKPEGTVGRAYYYRKSLKNKKTSSGAIYCP
HKLTAAHPTLPLGKKVKVINIGNKKSVVVTVNDRCRKHHFEFIDLSQAAARALGFFGKGMAMVQIIPFEE

Sequences:

>Translated_150_residues
MMHFRNRISRIARCLLAFQIVFLFAAHPLQAEDTSELKTDPINQKDISDLQKPEGTVGRAYYYRKSLKNKKTSSGAIYCP
HKLTAAHPTLPLGKKVKVINIGNKKSVVVTVNDRCRKHHFEFIDLSQAAARALGFFGKGMAMVQIIPFEE
>Mature_150_residues
MMHFRNRISRIARCLLAFQIVFLFAAHPLQAEDTSELKTDPINQKDISDLQKPEGTVGRAYYYRKSLKNKKTSSGAIYCP
HKLTAAHPTLPLGKKVKVINIGNKKSVVVTVNDRCRKHHFEFIDLSQAAARALGFFGKGMAMVQIIPFEE

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 16930; Mature: 16930

Theoretical pI: Translated: 10.51; Mature: 10.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMHFRNRISRIARCLLAFQIVFLFAAHPLQAEDTSELKTDPINQKDISDLQKPEGTVGRA
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHH
YYYRKSLKNKKTSSGAIYCPHKLTAAHPTLPLGKKVKVINIGNKKSVVVTVNDRCRKHHF
HHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCHHHHHCC
EFIDLSQAAARALGFFGKGMAMVQIIPFEE
CEECHHHHHHHHHHHHCCCEEEEEEEECCC
>Mature Secondary Structure
MMHFRNRISRIARCLLAFQIVFLFAAHPLQAEDTSELKTDPINQKDISDLQKPEGTVGRA
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHH
YYYRKSLKNKKTSSGAIYCPHKLTAAHPTLPLGKKVKVINIGNKKSVVVTVNDRCRKHHF
HHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCHHHHHCC
EFIDLSQAAARALGFFGKGMAMVQIIPFEE
CEECHHHHHHHHHHHHCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]