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The map label for this gene is yhaM [H]

Identifier: 85859576

GI number: 85859576

Start: 1806063

End: 1807106

Strand: Direct

Name: yhaM [H]

Synonym: SYN_02192

Alternate gene names: 85859576

Gene position: 1806063-1807106 (Clockwise)

Preceding gene: 85859575

Following gene: 85859578

Centisome position: 56.81

GC content: 46.17

Gene sequence:

>1044_bases
ATGCCGGCTTATAAAGTTCTACAAAAAGGGAAAACTGGTGATCTTTTGAATGTGAAACATCTTTACATAAAGGATATTCA
ATCGGGAGAAAAAGTTCAGGACTCATTTCTTGTTACAGAGAAAAACGTGGCCTATTCTCAGAAAGGCGCCCCATATCTTA
ATCTCCGCCTGAAAGACAAGACCGGTCAGGTCGATGGAAAAATCTGGGATAATGCCCTGGAATGGGATAAACGATTTCGT
AAGGGAGACGTTGTTCAGGTCAACGCCCGGGCTGTGAGTTTCAGGAACTCACTGCAGCTTTCCATCCTGTCCCTGAATAC
TCTCGATGATTCCGAAGTTATTCTGAATGATTACGTACCAACGACCCGGATGAACGTCGAAGTTATGTTCAGTGAACTGC
AATCCATCATCGACCGGATCGATACCCCACCGCTGAAAAAATTACTTAAATCCTTCTTTGATGACCGTGAAATTGCGGAA
CGTTTCAAGCGGGCGCCGGCAGCCAAAGGGTTCCATCATATCTACCTGGGAGGACTTCTGGAGCATACCCATTCCGTAAC
CCGATTGCTGAGCCAGATCGCATCCCATTACCCTGGAGTGAACCGGGATCTTCTTCTGACAGGAGGAATCCTTCATGATA
TCGGCAAGATCAATGAATTTTCCTATGATCGCTTGGTTGAGTACAGTGACGAGGGCAGACTCATCGGTCACATTATCATC
GGTGTAGAAATGATTGATGAAAAAATTACCGCAATCCCGGATTTCCCCGCTTATCTTGCCATGGAACTCCGCCATTTGAT
TCTGAGTCATCATGGCATACTGGAATACGGTTCCCCCAAGCGGCCCAAAACCCTGGAAGCCCTTATGGTTCATTATGTGG
ATGACTTAGATGCCAAGGTCAACGCCTTCCAGGAATATTTGAATGATTTCCGTGATGAAGATACGGGGTGGACGCCTTTC
CACCGTTTTCTTGAACGGTATCTTTATCGGGGAAGAGTTCAGGAAATCACAGCAGAAGAACCGATTTCCCCGAAGGAATT
TTGA

Upstream 100 bases:

>100_bases
GAATATTTCGATCTTACGAAACTCACCATCCGTGCAGGGGAACACCGTCTTTTACGCGAGAAATAAGCATCATAGCCATT
GGGCACAGTAAGGTTGATCA

Downstream 100 bases:

>100_bases
TTCCTCAACGAAACCGTTCCTTTGTTGCTCTCGCCGTCAAAATACAGAACCCGCAGGGAGATTGCCACTGCGGGTTCTTT
TTAAGGTATTACGGTGTAGT

Product: HD-superfamily hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 347; Mature: 346

Protein sequence:

>347_residues
MPAYKVLQKGKTGDLLNVKHLYIKDIQSGEKVQDSFLVTEKNVAYSQKGAPYLNLRLKDKTGQVDGKIWDNALEWDKRFR
KGDVVQVNARAVSFRNSLQLSILSLNTLDDSEVILNDYVPTTRMNVEVMFSELQSIIDRIDTPPLKKLLKSFFDDREIAE
RFKRAPAAKGFHHIYLGGLLEHTHSVTRLLSQIASHYPGVNRDLLLTGGILHDIGKINEFSYDRLVEYSDEGRLIGHIII
GVEMIDEKITAIPDFPAYLAMELRHLILSHHGILEYGSPKRPKTLEALMVHYVDDLDAKVNAFQEYLNDFRDEDTGWTPF
HRFLERYLYRGRVQEITAEEPISPKEF

Sequences:

>Translated_347_residues
MPAYKVLQKGKTGDLLNVKHLYIKDIQSGEKVQDSFLVTEKNVAYSQKGAPYLNLRLKDKTGQVDGKIWDNALEWDKRFR
KGDVVQVNARAVSFRNSLQLSILSLNTLDDSEVILNDYVPTTRMNVEVMFSELQSIIDRIDTPPLKKLLKSFFDDREIAE
RFKRAPAAKGFHHIYLGGLLEHTHSVTRLLSQIASHYPGVNRDLLLTGGILHDIGKINEFSYDRLVEYSDEGRLIGHIII
GVEMIDEKITAIPDFPAYLAMELRHLILSHHGILEYGSPKRPKTLEALMVHYVDDLDAKVNAFQEYLNDFRDEDTGWTPF
HRFLERYLYRGRVQEITAEEPISPKEF
>Mature_346_residues
PAYKVLQKGKTGDLLNVKHLYIKDIQSGEKVQDSFLVTEKNVAYSQKGAPYLNLRLKDKTGQVDGKIWDNALEWDKRFRK
GDVVQVNARAVSFRNSLQLSILSLNTLDDSEVILNDYVPTTRMNVEVMFSELQSIIDRIDTPPLKKLLKSFFDDREIAER
FKRAPAAKGFHHIYLGGLLEHTHSVTRLLSQIASHYPGVNRDLLLTGGILHDIGKINEFSYDRLVEYSDEGRLIGHIIIG
VEMIDEKITAIPDFPAYLAMELRHLILSHHGILEYGSPKRPKTLEALMVHYVDDLDAKVNAFQEYLNDFRDEDTGWTPFH
RFLERYLYRGRVQEITAEEPISPKEF

Specific function: Shows a 3'-5' exoribonuclease activity [H]

COG id: COG3481

COG function: function code R; Predicted HD-superfamily hydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yhaM family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020873
- InterPro:   IPR003607
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR004365 [H]

Pfam domain/function: PF01336 tRNA_anti [H]

EC number: NA

Molecular weight: Translated: 39915; Mature: 39784

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAYKVLQKGKTGDLLNVKHLYIKDIQSGEKVQDSFLVTEKNVAYSQKGAPYLNLRLKDK
CCCHHHHHCCCCCCEECCHHHHHHHCCCCCHHHHHHEEEECCCCCCCCCCCEEEEEEECC
TGQVDGKIWDNALEWDKRFRKGDVVQVNARAVSFRNSLQLSILSLNTLDDSEVILNDYVP
CCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHEECCCCEEEEEEEECCCCCCHHHHHCCCC
TTRMNVEVMFSELQSIIDRIDTPPLKKLLKSFFDDREIAERFKRAPAAKGFHHIYLGGLL
CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHH
EHTHSVTRLLSQIASHYPGVNRDLLLTGGILHDIGKINEFSYDRLVEYSDEGRLIGHIII
HHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHCCCCCHHHHHEECCCCCEEEHHHH
GVEMIDEKITAIPDFPAYLAMELRHLILSHHGILEYGSPKRPKTLEALMVHYVDDLDAKV
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
NAFQEYLNDFRDEDTGWTPFHRFLERYLYRGRVQEITAEEPISPKEF
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
PAYKVLQKGKTGDLLNVKHLYIKDIQSGEKVQDSFLVTEKNVAYSQKGAPYLNLRLKDK
CCHHHHHCCCCCCEECCHHHHHHHCCCCCHHHHHHEEEECCCCCCCCCCCEEEEEEECC
TGQVDGKIWDNALEWDKRFRKGDVVQVNARAVSFRNSLQLSILSLNTLDDSEVILNDYVP
CCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHEECCCCEEEEEEEECCCCCCHHHHHCCCC
TTRMNVEVMFSELQSIIDRIDTPPLKKLLKSFFDDREIAERFKRAPAAKGFHHIYLGGLL
CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHH
EHTHSVTRLLSQIASHYPGVNRDLLLTGGILHDIGKINEFSYDRLVEYSDEGRLIGHIII
HHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHCCCCCHHHHHEECCCCCEEEHHHH
GVEMIDEKITAIPDFPAYLAMELRHLILSHHGILEYGSPKRPKTLEALMVHYVDDLDAKV
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
NAFQEYLNDFRDEDTGWTPFHRFLERYLYRGRVQEITAEEPISPKEF
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA