Definition Syntrophus aciditrophicus SB chromosome, complete genome.
Accession NC_007759
Length 3,179,300

Click here to switch to the map view.

The map label for this gene is 85859528

Identifier: 85859528

GI number: 85859528

Start: 1754437

End: 1755396

Strand: Direct

Name: 85859528

Synonym: SYN_01870

Alternate gene names: NA

Gene position: 1754437-1755396 (Clockwise)

Preceding gene: 85859527

Following gene: 85859529

Centisome position: 55.18

GC content: 55.62

Gene sequence:

>960_bases
GTGCCATCCCTTCGGGAGGACGGGGCTCATCTGGGGAGCGCTCAAGAACCCGCCGCTCGTAGGGGACAACTTCGTCTGGC
AGCTCTTCAGGAGAAGGTCATGCTGCGCTTTCTGATCAAGAAAGGAACCCGGATGGGACTACTGATCCTTTTCGCGTTTA
TGGGTTTCTTACATGCGTCCATTCCCGACTCTGGAGCGGATGACATGGAGGACATCAGCCGATTCATGGAGAACGCAGGC
CGGATCGGCCGGAACATCGAGATCCCGGAGAATCTCCACAAGGCTCAGGGGCAGAAAGAAGCGGGAAAGCTGCTGGAATA
CTACCAGTCGGAGGCGTTCAAGAGGAAATACGAGGCGGAGATCGAGCGTCTCAAGGGAACGGTTTTCAAGGATACGATCG
ATTCCTATTACGGAGATTCCAACGGAGCGGAAAAAGACAGCGTCAAAGGGGGAACCCTCCCCGGAAACGAACGGATCTAT
CTTTTCATATCCTCATCCGTTCCCATCGGCACGCTAAGGAACTATGCGAGGGACCTGGATAGGCTTGGCGACCCGAACGT
CTTCATGGTGCTGCAGGGCTTCGTGGGCGGGATGAAGCGCGTGAAGCCCACGATGGATTTCGTGCGTAAGATCATCACCG
AAGATGCGGACTGTGACATTCAAAAGAACAAATGCAGCGCTTACAAGGTCAAAGTCAAGATTGACCCCCTCCTCTTCCGA
AAATACGGGATCACCCGGGTGCCTGCCGCCGTTTACGTGCCGGACGTCCGGATCATGGATGTGACGTTGAGCGAGGGAAT
GGAAGGGAACGCGAAGACGGGCGATCATTATGTTCTCCACGGAGACGCTTCACTGGCATACATGCTGGAGACCCTGCGCA
GGCCATCCGGGAGGCGCTCGATCGACCTCCTGATCGAGGCACTGAAAGGCGGAATTTACCACGAGGTGAACAAGAGATGA

Upstream 100 bases:

>100_bases
TCTGCGACACGGCCCTCAACCTGTGCGCCTGCGTCCCCACGCCCATCTGGGTGAAGCACAACTGGCGCATGCACGTCGCC
AAGCCGGTGCGCGACTTCAT

Downstream 100 bases:

>100_bases
AGGAAAGCATTGAGAAAGAAGAAATGATGGAGTCCAGCGCCGCTCAACCGGGAGAAATCCCCGCGGGTGCAGGGAAAACG
AAACAGGAAGGCAAGGTGGG

Product: cytoplasmic protein

Products: NA

Alternate protein names: Cytoplasmic Protein

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MPSLREDGAHLGSAQEPAARRGQLRLAALQEKVMLRFLIKKGTRMGLLILFAFMGFLHASIPDSGADDMEDISRFMENAG
RIGRNIEIPENLHKAQGQKEAGKLLEYYQSEAFKRKYEAEIERLKGTVFKDTIDSYYGDSNGAEKDSVKGGTLPGNERIY
LFISSSVPIGTLRNYARDLDRLGDPNVFMVLQGFVGGMKRVKPTMDFVRKIITEDADCDIQKNKCSAYKVKVKIDPLLFR
KYGITRVPAAVYVPDVRIMDVTLSEGMEGNAKTGDHYVLHGDASLAYMLETLRRPSGRRSIDLLIEALKGGIYHEVNKR

Sequences:

>Translated_319_residues
MPSLREDGAHLGSAQEPAARRGQLRLAALQEKVMLRFLIKKGTRMGLLILFAFMGFLHASIPDSGADDMEDISRFMENAG
RIGRNIEIPENLHKAQGQKEAGKLLEYYQSEAFKRKYEAEIERLKGTVFKDTIDSYYGDSNGAEKDSVKGGTLPGNERIY
LFISSSVPIGTLRNYARDLDRLGDPNVFMVLQGFVGGMKRVKPTMDFVRKIITEDADCDIQKNKCSAYKVKVKIDPLLFR
KYGITRVPAAVYVPDVRIMDVTLSEGMEGNAKTGDHYVLHGDASLAYMLETLRRPSGRRSIDLLIEALKGGIYHEVNKR
>Mature_318_residues
PSLREDGAHLGSAQEPAARRGQLRLAALQEKVMLRFLIKKGTRMGLLILFAFMGFLHASIPDSGADDMEDISRFMENAGR
IGRNIEIPENLHKAQGQKEAGKLLEYYQSEAFKRKYEAEIERLKGTVFKDTIDSYYGDSNGAEKDSVKGGTLPGNERIYL
FISSSVPIGTLRNYARDLDRLGDPNVFMVLQGFVGGMKRVKPTMDFVRKIITEDADCDIQKNKCSAYKVKVKIDPLLFRK
YGITRVPAAVYVPDVRIMDVTLSEGMEGNAKTGDHYVLHGDASLAYMLETLRRPSGRRSIDLLIEALKGGIYHEVNKR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35744; Mature: 35613

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSLREDGAHLGSAQEPAARRGQLRLAALQEKVMLRFLIKKGTRMGLLILFAFMGFLHAS
CCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
IPDSGADDMEDISRFMENAGRIGRNIEIPENLHKAQGQKEAGKLLEYYQSEAFKRKYEAE
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
IERLKGTVFKDTIDSYYGDSNGAEKDSVKGGTLPGNERIYLFISSSVPIGTLRNYARDLD
HHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHH
RLGDPNVFMVLQGFVGGMKRVKPTMDFVRKIITEDADCDIQKNKCSAYKVKVKIDPLLFR
HCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECHHHHH
KYGITRVPAAVYVPDVRIMDVTLSEGMEGNAKTGDHYVLHGDASLAYMLETLRRPSGRRS
HCCCCCCCCEEECCCEEEEEEEHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCHH
IDLLIEALKGGIYHEVNKR
HHHHHHHHHCCHHHHCCCC
>Mature Secondary Structure 
PSLREDGAHLGSAQEPAARRGQLRLAALQEKVMLRFLIKKGTRMGLLILFAFMGFLHAS
CCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
IPDSGADDMEDISRFMENAGRIGRNIEIPENLHKAQGQKEAGKLLEYYQSEAFKRKYEAE
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
IERLKGTVFKDTIDSYYGDSNGAEKDSVKGGTLPGNERIYLFISSSVPIGTLRNYARDLD
HHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHH
RLGDPNVFMVLQGFVGGMKRVKPTMDFVRKIITEDADCDIQKNKCSAYKVKVKIDPLLFR
HCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECHHHHH
KYGITRVPAAVYVPDVRIMDVTLSEGMEGNAKTGDHYVLHGDASLAYMLETLRRPSGRRS
HCCCCCCCCEEECCCEEEEEEEHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCHH
IDLLIEALKGGIYHEVNKR
HHHHHHHHHCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA