| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is traC [H]
Identifier: 85859523
GI number: 85859523
Start: 1744023
End: 1746557
Strand: Direct
Name: traC [H]
Synonym: SYN_01865
Alternate gene names: 85859523
Gene position: 1744023-1746557 (Clockwise)
Preceding gene: 85859522
Following gene: 85859524
Centisome position: 54.86
GC content: 57.32
Gene sequence:
>2535_bases TTGGATCATGGGCGGCTACCTGAAGGAAGGAGCGGCCGACTGATGGGAAAGCTCTTTGACGTGATCTTCGGCGCCCGCGG GGGAATGACCCGCAAGGATCTCCGAAATTTGACCCGCAGAGACCGGTTTTCCGATTATCTCCCCTGGATCGCTTACGACG GGGAAACGGAAGCATACCACAACGCGGACGGGACCAAGGGCTTTCTCTGGGAATGCAGCCCATTGTGCTTCGCAGGGGAA AAGACCCTCTTCACCCTGGAGGGGCTCTTCCGGCTGGGGCTTCCGCACGGATCGGTCATGCAGTTCATCCTGCACGCCGA CAGCCACATCGATCCCTACATCGAGGCGTACCGGTCGGGGAAAACGCGTGACCTCGCGATCGTTCACGAGGCCTCCGAGA AGTTCGCCGCTTTCCTTGAGAAGGGCGTGGAGGGCATGGACATCTTCCTCAAAACCCCTCTGAGAAATTTCCGCCTCTTC GTGGCGGTGAAGTTCCCCGAAGAACGGGAGATGAAGCTCCACGCGAAGGATCTCTCCAACTCCATACTGGAGATCCTGAG GGGGGCGGACCTCTATCCCAGGCCCGTGCCTCCCCATGCGCTCGTCGAATGGATGCGCAGATACCTAAACGACGTTCCTT CCCCGAATAACGACGCCTACGACGATTCGATTCCCATTCGGAAACAGGTGATCTTCTCCGATACGGTCATCGAAAAATCC ATGGACCGAATGAAGGTAGGGAACCGGTATTTCCGCTGCACCACGGTAAAACACTATCCCAAGGAAGTGGACCCGCTCCA GACGAACGAGCTCTTCGGGGGCGTGTGGGGAGTGGTCTCCGACGCCAACCAGATCACGACGCCGTTTTTCTTCGCGCTGA ACGTCGTATTTCACAATCTCAAGTCGAAGCTCCACACGAAGTGCAACCTCGTTTTGCAGCAGCAGGGGGTTGGAAGCTTC GCCCCTTCCCTCATGAGAAAGAAAGACGAGTACATGACCGCGGTGGACGAGGTGGAAAAGGGGACCCCTTTCGTGAGGGT GATCCCGATCCTCTGGGTCTGGGGGGACAGCGAAAAGACCGTGAGTGAATCGATCGTGAGGGCCAAGCGGATGTGGGAAG CGCAGGGCTACGTCATGCAGGAGGACAGGGGGATCTTGCCCGTCCTCTTTCTCTCGTCCCTTCCCTTCGGCCTCTATGAC CGGGACGACAACGTGGACAACCTCGACCGGGACTTTATCGCGCCCTGTGACAGCGTAGCGGTGACCCTCCCCGTCCAGGC GGACTTCTCCGGCGGAGGCAAGCCGAGTCTCATCTTCATCGGGAGAAAGGGGCAGCCCTGTTCCCTGGACGTTTTCGACC GGCACGCCAACAACCATAACATTTTCATCGCAGCCTCTTCGGGAAGCGGAAAATCCTTCCTCGTGAATTACCTCGTCTAC AACTATTTCGCTTCCAGCGCCCTCATACGCATCGTGGACATCGGCGGCTCCTACAAGAAGATGACGAGGCTCTTTGGCGC CCGTTTCCTCGATTTCTCCGAGCAATCGAGGATTTGCATGAACCCGTTCACGAACGTCATGGACCCTGCGGGCGATCTCC CCGTCATCGCTTCCATCGTCCTGCAGATGGTCTACTCGTCCACGGACATCGTCCCGGAGGACACGGCGGAGACGGCCATG TCGCTCATCAAGTCGGCGGTCAAGTGGGCCTGGCGGACGGAAGGAGCGGACGCCTCAATCGACACCGTCTACGAGTACCT GTCCACCTTCCCTGAGCACGCGGAGGAGTTCGATTCCTGCCACGAGAATGATATCGCGGCATTCCGGTCCCTTTCTCGCA ACCTCTCGTTCAACCTGACAGAATTCACGAGCGGGCACCTCTACGGGAAATGGTTCAACGGGACTTCCGATTTCAACATC GCCGGAGATGAGTTTGTCGTCCTCGAATTGGAACATCTAAAACCCCAGAAGGAGCTCTTCAAGGTCATTACGCTCCAAGT GATCAACGCCGTGACTCAGGACCTCTATATCTCAGACCGGTCGAGGCCCAGGTTCATCATTTTCGACGAGGCGTGGCAGT TCATGCAGGAGGGAAGCTCACTGAAAGGGGTCATTGAAGAAGGATACCGGCGGGCGAGAAAATACGGTGGGAGCTTCACG GTCATCACACAGTCCATTCTCGATTTGAAGCAGTTCGGAAGCATCGGGGACGTGATCCGTTCAAACAGCGCCTTCAAGTT TTATCTGGAATCCAGCGATTTCGATCGGGCGAAGCTGGAGGGTCTGATCGAGCACGAAGGGTTCGCCCTCAAGATCCTGA AGTCGGTCCGGAGCAACAAGCCCAAGTACTCGGAGATCTTCATGGACACCCCGTTCGGTCAGGGCGTGGCCAGGCTCGCC GTGGACCCCTTCTCCTATTACCTCTACACGTCCGATGCGGCGGAAATCGCCGAGATCGAATCCCTCGTGGACAACGGAAT GAGCTATGGCGAAGCGATCAATGAAATGGTCAAGAGATACAGGACGGCCGGTTAG
Upstream 100 bases:
>100_bases CGCCTCCCCGGGTCATGAGGGTGCTTCTCCTCCCTTACAAAGGCGATGGAGGGGAACTCTTCATGCCGAGATACGTCTAC TTCATGGCCGACGATGCCCG
Downstream 100 bases:
>100_bases GGTCCTGTTCCTTCTTTTCCTGTGCTTCGCCCCGGGGATCGTCCATGCGGCGGGTTCCGGAGATCCCGGTCAGGCCGGAA ATGATCTCGGGAGTGCCGCC
Product: sex pilus assembly protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 844; Mature: 844
Protein sequence:
>844_residues MDHGRLPEGRSGRLMGKLFDVIFGARGGMTRKDLRNLTRRDRFSDYLPWIAYDGETEAYHNADGTKGFLWECSPLCFAGE KTLFTLEGLFRLGLPHGSVMQFILHADSHIDPYIEAYRSGKTRDLAIVHEASEKFAAFLEKGVEGMDIFLKTPLRNFRLF VAVKFPEEREMKLHAKDLSNSILEILRGADLYPRPVPPHALVEWMRRYLNDVPSPNNDAYDDSIPIRKQVIFSDTVIEKS MDRMKVGNRYFRCTTVKHYPKEVDPLQTNELFGGVWGVVSDANQITTPFFFALNVVFHNLKSKLHTKCNLVLQQQGVGSF APSLMRKKDEYMTAVDEVEKGTPFVRVIPILWVWGDSEKTVSESIVRAKRMWEAQGYVMQEDRGILPVLFLSSLPFGLYD RDDNVDNLDRDFIAPCDSVAVTLPVQADFSGGGKPSLIFIGRKGQPCSLDVFDRHANNHNIFIAASSGSGKSFLVNYLVY NYFASSALIRIVDIGGSYKKMTRLFGARFLDFSEQSRICMNPFTNVMDPAGDLPVIASIVLQMVYSSTDIVPEDTAETAM SLIKSAVKWAWRTEGADASIDTVYEYLSTFPEHAEEFDSCHENDIAAFRSLSRNLSFNLTEFTSGHLYGKWFNGTSDFNI AGDEFVVLELEHLKPQKELFKVITLQVINAVTQDLYISDRSRPRFIIFDEAWQFMQEGSSLKGVIEEGYRRARKYGGSFT VITQSILDLKQFGSIGDVIRSNSAFKFYLESSDFDRAKLEGLIEHEGFALKILKSVRSNKPKYSEIFMDTPFGQGVARLA VDPFSYYLYTSDAAEIAEIESLVDNGMSYGEAINEMVKRYRTAG
Sequences:
>Translated_844_residues MDHGRLPEGRSGRLMGKLFDVIFGARGGMTRKDLRNLTRRDRFSDYLPWIAYDGETEAYHNADGTKGFLWECSPLCFAGE KTLFTLEGLFRLGLPHGSVMQFILHADSHIDPYIEAYRSGKTRDLAIVHEASEKFAAFLEKGVEGMDIFLKTPLRNFRLF VAVKFPEEREMKLHAKDLSNSILEILRGADLYPRPVPPHALVEWMRRYLNDVPSPNNDAYDDSIPIRKQVIFSDTVIEKS MDRMKVGNRYFRCTTVKHYPKEVDPLQTNELFGGVWGVVSDANQITTPFFFALNVVFHNLKSKLHTKCNLVLQQQGVGSF APSLMRKKDEYMTAVDEVEKGTPFVRVIPILWVWGDSEKTVSESIVRAKRMWEAQGYVMQEDRGILPVLFLSSLPFGLYD RDDNVDNLDRDFIAPCDSVAVTLPVQADFSGGGKPSLIFIGRKGQPCSLDVFDRHANNHNIFIAASSGSGKSFLVNYLVY NYFASSALIRIVDIGGSYKKMTRLFGARFLDFSEQSRICMNPFTNVMDPAGDLPVIASIVLQMVYSSTDIVPEDTAETAM SLIKSAVKWAWRTEGADASIDTVYEYLSTFPEHAEEFDSCHENDIAAFRSLSRNLSFNLTEFTSGHLYGKWFNGTSDFNI AGDEFVVLELEHLKPQKELFKVITLQVINAVTQDLYISDRSRPRFIIFDEAWQFMQEGSSLKGVIEEGYRRARKYGGSFT VITQSILDLKQFGSIGDVIRSNSAFKFYLESSDFDRAKLEGLIEHEGFALKILKSVRSNKPKYSEIFMDTPFGQGVARLA VDPFSYYLYTSDAAEIAEIESLVDNGMSYGEAINEMVKRYRTAG >Mature_844_residues MDHGRLPEGRSGRLMGKLFDVIFGARGGMTRKDLRNLTRRDRFSDYLPWIAYDGETEAYHNADGTKGFLWECSPLCFAGE KTLFTLEGLFRLGLPHGSVMQFILHADSHIDPYIEAYRSGKTRDLAIVHEASEKFAAFLEKGVEGMDIFLKTPLRNFRLF VAVKFPEEREMKLHAKDLSNSILEILRGADLYPRPVPPHALVEWMRRYLNDVPSPNNDAYDDSIPIRKQVIFSDTVIEKS MDRMKVGNRYFRCTTVKHYPKEVDPLQTNELFGGVWGVVSDANQITTPFFFALNVVFHNLKSKLHTKCNLVLQQQGVGSF APSLMRKKDEYMTAVDEVEKGTPFVRVIPILWVWGDSEKTVSESIVRAKRMWEAQGYVMQEDRGILPVLFLSSLPFGLYD RDDNVDNLDRDFIAPCDSVAVTLPVQADFSGGGKPSLIFIGRKGQPCSLDVFDRHANNHNIFIAASSGSGKSFLVNYLVY NYFASSALIRIVDIGGSYKKMTRLFGARFLDFSEQSRICMNPFTNVMDPAGDLPVIASIVLQMVYSSTDIVPEDTAETAM SLIKSAVKWAWRTEGADASIDTVYEYLSTFPEHAEEFDSCHENDIAAFRSLSRNLSFNLTEFTSGHLYGKWFNGTSDFNI AGDEFVVLELEHLKPQKELFKVITLQVINAVTQDLYISDRSRPRFIIFDEAWQFMQEGSSLKGVIEEGYRRARKYGGSFT VITQSILDLKQFGSIGDVIRSNSAFKFYLESSDFDRAKLEGLIEHEGFALKILKSVRSNKPKYSEIFMDTPFGQGVARLA VDPFSYYLYTSDAAEIAEIESLVDNGMSYGEAINEMVKRYRTAG
Specific function: Required for the assembly of mature F-pilin subunits into extended F pili [H]
COG id: COG3451
COG function: function code U; Type IV secretory pathway, VirB4 components
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002789 - InterPro: IPR014117 [H]
Pfam domain/function: PF01935 DUF87 [H]
EC number: NA
Molecular weight: Translated: 95530; Mature: 95530
Theoretical pI: Translated: 5.88; Mature: 5.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDHGRLPEGRSGRLMGKLFDVIFGARGGMTRKDLRNLTRRDRFSDYLPWIAYDGETEAYH CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCEE NADGTKGFLWECSPLCFAGEKTLFTLEGLFRLGLPHGSVMQFILHADSHIDPYIEAYRSG CCCCCCCEEEECCCCEECCCCEEEEHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHCC KTRDLAIVHEASEKFAAFLEKGVEGMDIFLKTPLRNFRLFVAVKFPEEREMKLHAKDLSN CCCEEEEEEHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHH SILEILRGADLYPRPVPPHALVEWMRRYLNDVPSPNNDAYDDSIPIRKQVIFSDTVIEKS HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH MDRMKVGNRYFRCTTVKHYPKEVDPLQTNELFGGVWGVVSDANQITTPFFFALNVVFHNL HHHHHHCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHH KSKLHTKCNLVLQQQGVGSFAPSLMRKKDEYMTAVDEVEKGTPFVRVIPILWVWGDSEKT HHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCHH VSESIVRAKRMWEAQGYVMQEDRGILPVLFLSSLPFGLYDRDDNVDNLDRDFIAPCDSVA HHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCEE VTLPVQADFSGGGKPSLIFIGRKGQPCSLDVFDRHANNHNIFIAASSGSGKSFLVNYLVY EEEEEEECCCCCCCCCEEEEECCCCCCEEEHHHCCCCCCEEEEEECCCCCHHHHHHHHHH NYFASSALIRIVDIGGSYKKMTRLFGARFLDFSEQSRICMNPFTNVMDPAGDLPVIASIV HHHHHCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCHHCCHHHHCCCCCCHHHHHHHH LQMVYSSTDIVPEDTAETAMSLIKSAVKWAWRTEGADASIDTVYEYLSTFPEHAEEFDSC HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCC HENDIAAFRSLSRNLSFNLTEFTSGHLYGKWFNGTSDFNIAGDEFVVLELEHLKPQKELF CCCHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEEHHHCCCHHHHH KVITLQVINAVTQDLYISDRSRPRFIIFDEAWQFMQEGSSLKGVIEEGYRRARKYGGSFT HHHHHHHHHHHHHHHEECCCCCCCEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCH VITQSILDLKQFGSIGDVIRSNSAFKFYLESSDFDRAKLEGLIEHEGFALKILKSVRSNK HHHHHHHHHHHHCCHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHCCC PKYSEIFMDTPFGQGVARLAVDPFSYYLYTSDAAEIAEIESLVDNGMSYGEAINEMVKRY CCCHHEEEECCCCCCHHHHEECCEEEEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHH RTAG HCCC >Mature Secondary Structure MDHGRLPEGRSGRLMGKLFDVIFGARGGMTRKDLRNLTRRDRFSDYLPWIAYDGETEAYH CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCEE NADGTKGFLWECSPLCFAGEKTLFTLEGLFRLGLPHGSVMQFILHADSHIDPYIEAYRSG CCCCCCCEEEECCCCEECCCCEEEEHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHCC KTRDLAIVHEASEKFAAFLEKGVEGMDIFLKTPLRNFRLFVAVKFPEEREMKLHAKDLSN CCCEEEEEEHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHH SILEILRGADLYPRPVPPHALVEWMRRYLNDVPSPNNDAYDDSIPIRKQVIFSDTVIEKS HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH MDRMKVGNRYFRCTTVKHYPKEVDPLQTNELFGGVWGVVSDANQITTPFFFALNVVFHNL HHHHHHCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHH KSKLHTKCNLVLQQQGVGSFAPSLMRKKDEYMTAVDEVEKGTPFVRVIPILWVWGDSEKT HHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCHH VSESIVRAKRMWEAQGYVMQEDRGILPVLFLSSLPFGLYDRDDNVDNLDRDFIAPCDSVA HHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCEE VTLPVQADFSGGGKPSLIFIGRKGQPCSLDVFDRHANNHNIFIAASSGSGKSFLVNYLVY EEEEEEECCCCCCCCCEEEEECCCCCCEEEHHHCCCCCCEEEEEECCCCCHHHHHHHHHH NYFASSALIRIVDIGGSYKKMTRLFGARFLDFSEQSRICMNPFTNVMDPAGDLPVIASIV HHHHHCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCHHCCHHHHCCCCCCHHHHHHHH LQMVYSSTDIVPEDTAETAMSLIKSAVKWAWRTEGADASIDTVYEYLSTFPEHAEEFDSC HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCC HENDIAAFRSLSRNLSFNLTEFTSGHLYGKWFNGTSDFNIAGDEFVVLELEHLKPQKELF CCCHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEEHHHCCCHHHHH KVITLQVINAVTQDLYISDRSRPRFIIFDEAWQFMQEGSSLKGVIEEGYRRARKYGGSFT HHHHHHHHHHHHHHHEECCCCCCCEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCH VITQSILDLKQFGSIGDVIRSNSAFKFYLESSDFDRAKLEGLIEHEGFALKILKSVRSNK HHHHHHHHHHHHCCHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHCCC PKYSEIFMDTPFGQGVARLAVDPFSYYLYTSDAAEIAEIESLVDNGMSYGEAINEMVKRY CCCHHEEEECCCCCCHHHHEECCEEEEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHH RTAG HCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2265751; 7915817; 1355084 [H]