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The map label for this gene is flgD [H]

Identifier: 85859174

GI number: 85859174

Start: 1352445

End: 1353107

Strand: Direct

Name: flgD [H]

Synonym: SYN_02840

Alternate gene names: 85859174

Gene position: 1352445-1353107 (Clockwise)

Preceding gene: 85859173

Following gene: 85859175

Centisome position: 42.54

GC content: 50.08

Gene sequence:

>663_bases
ATGTGGGGCGTGACGAATATAGGCAAGGCGGCCAGCGCAGGTTCAGAAGGAACATCAACGAATAAATTAACGGGAAAAGA
TGAATTTTTGAAGATGCTCATTGCGCAGCTTCAAAATCAGAATCCTCTAAATCCCCTTGATGGAACCGATTTTGCCGCTC
AGCTCGCCCAGTTTTCGAGTCTGGAACAGCTGACCAACATGAATTCAACACTGGAATCCTTAAGCGCACTTCAGACAACG
CAGAACGGCATCATGGCTGCGAATCTGATCGGCAGGCAGGTTTCGGCCAATCAGGAGGGAGGGAATATCCTTACCGTGAC
CGGATCCAGCGCAAATTTGAGTTACAGCCTCGCTAAAGATGCAAAGAAGGTGACGGTAAACATTTACAATGAGGAAGGCA
AACTGGTGAAAACCCTCGAAGGAAGAAATCAAAGCGCCGGACACAATACCCTCACATGGGACTGCGGTGTCGATGCGCAG
GGCGCCTATACCTTTGATGTCAGCGCGGAAGATTCCAGTGGAAACGATGTATCTGTGAATACGACGATTACAGGCATTGT
GACGGAGGTCCGGTTCACGGATCAATCTCTTCTGGTGACGGTGAACGGCCGGCAGATTTCCATTGCCGATATTGTCGAAG
TCAGCGGCACACCGGCAACTTGA

Upstream 100 bases:

>100_bases
GAACAGGCTGATGGCATAATGGATCTGCTCAAGGGATCGAGGTTTTATCCGGGTGATCGTTATAACCGAATAAGCCTGTT
TATTTAGGAGGTGTCAGGAG

Downstream 100 bases:

>100_bases
TGGTTCAGCGGCAGGACATGTTTTTCATCAGGAATGAAAAGCGATTTTTATAAAAATGAAAATTGAAGATTATATGGAAA
ATCAGGAGGAGAGAGATGTC

Product: flagellar hook capping protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MWGVTNIGKAASAGSEGTSTNKLTGKDEFLKMLIAQLQNQNPLNPLDGTDFAAQLAQFSSLEQLTNMNSTLESLSALQTT
QNGIMAANLIGRQVSANQEGGNILTVTGSSANLSYSLAKDAKKVTVNIYNEEGKLVKTLEGRNQSAGHNTLTWDCGVDAQ
GAYTFDVSAEDSSGNDVSVNTTITGIVTEVRFTDQSLLVTVNGRQISIADIVEVSGTPAT

Sequences:

>Translated_220_residues
MWGVTNIGKAASAGSEGTSTNKLTGKDEFLKMLIAQLQNQNPLNPLDGTDFAAQLAQFSSLEQLTNMNSTLESLSALQTT
QNGIMAANLIGRQVSANQEGGNILTVTGSSANLSYSLAKDAKKVTVNIYNEEGKLVKTLEGRNQSAGHNTLTWDCGVDAQ
GAYTFDVSAEDSSGNDVSVNTTITGIVTEVRFTDQSLLVTVNGRQISIADIVEVSGTPAT
>Mature_220_residues
MWGVTNIGKAASAGSEGTSTNKLTGKDEFLKMLIAQLQNQNPLNPLDGTDFAAQLAQFSSLEQLTNMNSTLESLSALQTT
QNGIMAANLIGRQVSANQEGGNILTVTGSSANLSYSLAKDAKKVTVNIYNEEGKLVKTLEGRNQSAGHNTLTWDCGVDAQ
GAYTFDVSAEDSSGNDVSVNTTITGIVTEVRFTDQSLLVTVNGRQISIADIVEVSGTPAT

Specific function: Required for flagellar hook formation. May act as a scaffolding protein [H]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

Organism=Escherichia coli, GI1787315, Length=158, Percent_Identity=31.6455696202532, Blast_Score=77, Evalue=8e-16,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 23124; Mature: 23124

Theoretical pI: Translated: 4.26; Mature: 4.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWGVTNIGKAASAGSEGTSTNKLTGKDEFLKMLIAQLQNQNPLNPLDGTDFAAQLAQFSS
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
LEQLTNMNSTLESLSALQTTQNGIMAANLIGRQVSANQEGGNILTVTGSSANLSYSLAKD
HHHHHHHHHHHHHHHHHHHHCCCEEEEHHHCCCCCCCCCCCEEEEEECCCCCEEEHCCCC
AKKVTVNIYNEEGKLVKTLEGRNQSAGHNTLTWDCGVDAQGAYTFDVSAEDSSGNDVSVN
CEEEEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCEEEEE
TTITGIVTEVRFTDQSLLVTVNGRQISIADIVEVSGTPAT
EEEEEEEEEEEECCCEEEEEECCCEEEEEHEEEECCCCCC
>Mature Secondary Structure
MWGVTNIGKAASAGSEGTSTNKLTGKDEFLKMLIAQLQNQNPLNPLDGTDFAAQLAQFSS
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
LEQLTNMNSTLESLSALQTTQNGIMAANLIGRQVSANQEGGNILTVTGSSANLSYSLAKD
HHHHHHHHHHHHHHHHHHHHCCCEEEEHHHCCCCCCCCCCCEEEEEECCCCCEEEHCCCC
AKKVTVNIYNEEGKLVKTLEGRNQSAGHNTLTWDCGVDAQGAYTFDVSAEDSSGNDVSVN
CEEEEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCEEEEE
TTITGIVTEVRFTDQSLLVTVNGRQISIADIVEVSGTPAT
EEEEEEEEEEEECCCEEEEEECCCEEEEEHEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]