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The map label for this gene is yabD [H]

Identifier: 85859109

GI number: 85859109

Start: 1286584

End: 1287351

Strand: Direct

Name: yabD [H]

Synonym: SYN_03204

Alternate gene names: 85859109

Gene position: 1286584-1287351 (Clockwise)

Preceding gene: 85859108

Following gene: 85859110

Centisome position: 40.47

GC content: 55.6

Gene sequence:

>768_bases
ATGATGATTGATTCGCACGCTCATCTTGAGCTGCCGGAATTTGATTCCGACCGGGACGAAGTGATTGCCCGGGCAAAGGA
AGCGGGTGTTGATGCCATTGTCACGATTGGAATCGATCTCGATGATTGCCTCAAAGCGGTGGAAATTGCCGACCGTTACG
ATATGGTCTACGCGGCGGTGGGGATTCATCCCCATGAAGTCAAAGTGATCGACAGGCAGACCTACGACCGGATGCGGGAT
CTGGCCGCCCGCCCCAAGGTTGTGGCCTACGGTGAGATCGGGCTGGATTTTTTTCGGAATCTTTCCCCCAGGGATGTGCA
GATCCGCCGCTTCGGGGAACAACTGGAACTGGCTCAGGACCTGAATCTTCCCGTGATCATTCACGATCGCGAGGCCCACA
GGGAAACGCTGGAAATCCTGAGCAGCTGGAAAGGGCAACGGCGGGGGATCATCCACTGCTTTTCCGGCGATTACGCCATG
GCCCGGAAATGTCTGGACCTGGGATTCTATATTTCCATACCGGGAACGGTGACCTTTACCAAGGCGGACACCCTGCGGGA
CGTCGTCCGCCGCGTCCCGGCCGAATCTCTCCTTGTGGAAACGGACGCGCCTTTTCTGACGCCGGAGCCACACCGGGGGA
AGCGTAACGAATCGGCTTACGTGAAGTACACCGCGATGCGGGTCGCGGAACTCAAGGAAATGAAGTTTGAGGAACTCGCG
GAAATAACATCGCGAAATGCCAGTGAAATATTTTCGATTAAACTATAA

Upstream 100 bases:

>100_bases
CCGGAGGAACTGAGAGCATACACGGATTCGCTTCCTGATGTTTTCGAAAACGCGGATGAAATAATTGTGGAAATAACGGA
CGAGACCGCGGAACAGCGAC

Downstream 100 bases:

>100_bases
GTCAGGACGGGAAAACGGAGGAAAGGGCCATATCCCGGAATGGGTATGGCCCTTTCCTGTCCGGAGGAGGGCGTCATGAA
AGAAAAAGCCGTTTTAGTCT

Product: sec-independent protein translocase protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MMIDSHAHLELPEFDSDRDEVIARAKEAGVDAIVTIGIDLDDCLKAVEIADRYDMVYAAVGIHPHEVKVIDRQTYDRMRD
LAARPKVVAYGEIGLDFFRNLSPRDVQIRRFGEQLELAQDLNLPVIIHDREAHRETLEILSSWKGQRRGIIHCFSGDYAM
ARKCLDLGFYISIPGTVTFTKADTLRDVVRRVPAESLLVETDAPFLTPEPHRGKRNESAYVKYTAMRVAELKEMKFEELA
EITSRNASEIFSIKL

Sequences:

>Translated_255_residues
MMIDSHAHLELPEFDSDRDEVIARAKEAGVDAIVTIGIDLDDCLKAVEIADRYDMVYAAVGIHPHEVKVIDRQTYDRMRD
LAARPKVVAYGEIGLDFFRNLSPRDVQIRRFGEQLELAQDLNLPVIIHDREAHRETLEILSSWKGQRRGIIHCFSGDYAM
ARKCLDLGFYISIPGTVTFTKADTLRDVVRRVPAESLLVETDAPFLTPEPHRGKRNESAYVKYTAMRVAELKEMKFEELA
EITSRNASEIFSIKL
>Mature_255_residues
MMIDSHAHLELPEFDSDRDEVIARAKEAGVDAIVTIGIDLDDCLKAVEIADRYDMVYAAVGIHPHEVKVIDRQTYDRMRD
LAARPKVVAYGEIGLDFFRNLSPRDVQIRRFGEQLELAQDLNLPVIIHDREAHRETLEILSSWKGQRRGIIHCFSGDYAM
ARKCLDLGFYISIPGTVTFTKADTLRDVVRRVPAESLLVETDAPFLTPEPHRGKRNESAYVKYTAMRVAELKEMKFEELA
EITSRNASEIFSIKL

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=267, Percent_Identity=31.8352059925094, Blast_Score=125, Evalue=5e-29,
Organism=Homo sapiens, GI110349734, Length=267, Percent_Identity=32.2097378277154, Blast_Score=124, Evalue=7e-29,
Organism=Homo sapiens, GI226061853, Length=275, Percent_Identity=32, Blast_Score=123, Evalue=2e-28,
Organism=Homo sapiens, GI14042943, Length=238, Percent_Identity=32.7731092436975, Blast_Score=117, Evalue=1e-26,
Organism=Homo sapiens, GI226061614, Length=252, Percent_Identity=30.952380952381, Blast_Score=116, Evalue=2e-26,
Organism=Homo sapiens, GI225903439, Length=218, Percent_Identity=32.1100917431193, Blast_Score=104, Evalue=6e-23,
Organism=Homo sapiens, GI226061595, Length=233, Percent_Identity=32.1888412017167, Blast_Score=101, Evalue=7e-22,
Organism=Homo sapiens, GI225903424, Length=173, Percent_Identity=33.5260115606936, Blast_Score=97, Evalue=1e-20,
Organism=Escherichia coli, GI1787342, Length=257, Percent_Identity=39.6887159533074, Blast_Score=174, Evalue=4e-45,
Organism=Escherichia coli, GI48994985, Length=261, Percent_Identity=36.7816091954023, Blast_Score=172, Evalue=1e-44,
Organism=Escherichia coli, GI87082439, Length=254, Percent_Identity=32.6771653543307, Blast_Score=148, Evalue=4e-37,
Organism=Caenorhabditis elegans, GI17559024, Length=281, Percent_Identity=30.9608540925267, Blast_Score=150, Evalue=7e-37,
Organism=Caenorhabditis elegans, GI71980746, Length=266, Percent_Identity=28.9473684210526, Blast_Score=106, Evalue=9e-24,
Organism=Caenorhabditis elegans, GI17565396, Length=216, Percent_Identity=28.2407407407407, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17543026, Length=215, Percent_Identity=27.4418604651163, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24648690, Length=286, Percent_Identity=32.5174825174825, Blast_Score=127, Evalue=5e-30,
Organism=Drosophila melanogaster, GI24586117, Length=208, Percent_Identity=31.7307692307692, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI221330018, Length=208, Percent_Identity=31.7307692307692, Blast_Score=92, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 29062; Mature: 29062

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMIDSHAHLELPEFDSDRDEVIARAKEAGVDAIVTIGIDLDDCLKAVEIADRYDMVYAAV
CCCCCCCCEECCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHEEEHEE
GIHPHEVKVIDRQTYDRMRDLAARPKVVAYGEIGLDFFRNLSPRDVQIRRFGEQLELAQD
CCCCHHEEEECHHHHHHHHHHHCCCCEEEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHH
LNLPVIIHDREAHRETLEILSSWKGQRRGIIHCFSGDYAMARKCLDLGFYISIPGTVTFT
CCCCEEEECCHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHCCEEEECCCEEEEE
KADTLRDVVRRVPAESLLVETDAPFLTPEPHRGKRNESAYVKYTAMRVAELKEMKFEELA
CHHHHHHHHHHCCHHHEEEECCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCHHHHH
EITSRNASEIFSIKL
HHHCCCCHHEEEECC
>Mature Secondary Structure
MMIDSHAHLELPEFDSDRDEVIARAKEAGVDAIVTIGIDLDDCLKAVEIADRYDMVYAAV
CCCCCCCCEECCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHEEEHEE
GIHPHEVKVIDRQTYDRMRDLAARPKVVAYGEIGLDFFRNLSPRDVQIRRFGEQLELAQD
CCCCHHEEEECHHHHHHHHHHHCCCCEEEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHH
LNLPVIIHDREAHRETLEILSSWKGQRRGIIHCFSGDYAMARKCLDLGFYISIPGTVTFT
CCCCEEEECCHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHCCEEEECCCEEEEE
KADTLRDVVRRVPAESLLVETDAPFLTPEPHRGKRNESAYVKYTAMRVAELKEMKFEELA
CHHHHHHHHHHCCHHHEEEECCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCHHHHH
EITSRNASEIFSIKL
HHHCCCCHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]