| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is zraS [C]
Identifier: 85858961
GI number: 85858961
Start: 1142901
End: 1144850
Strand: Direct
Name: zraS [C]
Synonym: SYN_00568
Alternate gene names: 85858961
Gene position: 1142901-1144850 (Clockwise)
Preceding gene: 85858959
Following gene: 85858962
Centisome position: 35.95
GC content: 53.59
Gene sequence:
>1950_bases TTGGAAATCTTCGAACAATTTCCTCTTGGGGTGTATGTCCATTTTTTTCAACATAAAGTACGCATAAACCGGATGAACCT TTTTTATTCTCTCCGCTGGAAGAGAATGCTCGGTTATACAGAAAGTGAAGTTGGAAACACCCCTGACGAGTGGGACAAAC GTGTCCATCCCGAGGACAGGAAACGTTGCCAGGAAGTGCTGGAAGCGCATTTAAGCGGAAAAACGCCGGTTTATGAAAGT GAATATCGCCTTCTATGCAAGAACGGCACTTATAAATGGATTATGGATCGCGGGACAGTCATTAATCGGACGGCAGACGG GAAACCGCTACGCGTTATTGGAACGCATGCAGACATCACCAGGCGCAGACTGATGGAGGATGAATTGCGGGAATCGAGGC AGAGGCTTGCCGACATCATCAACTTTCTTCCCGACGCAACCCTGGTCATCGACAGGGAAAGCCGGGTCATTTCCTGGAAT CAGGCGATAGAAAAAATGACGGGGATCAGCGCGGAAGAAATGCTCGGCAAGGGCAACTACGAGTATGCCCTTCCTTTTTA CGGGGAAAGAAGGCCGATTCTCATCGATCACGCTCTTCGTCCGGATATGCAGGCGAAAAAACAATACACGGCCTTTTACA GAGCGGGAGAGATTCTTTTCGGGCAATCCTGTGTGTCCGCACTTCCTTCCGGCGAACTCCATCTCTCCGCATCGGCATCT GTTCTGCGGGATTCCCGGGGAGAGATCATTGCCGCCATTGAATGCATCCGGGATAATACCGAACTGAAAAAACTGCAGGA CCGTCTGAACCGCGCCGAAAAGATGGAAGGGCTGGGAAGGCTGGCCGGAGGCGTAGCGCATGATCTCAATAATGTCCTGG GGGTCCTGGTGGGATATTCGGAACTGCTTGCGGAAACCGTTCCCGGTGACAGCCCCTTGAAAAGGTATGCGAAAAACATC CTGCAATCCGGGATGAGGGGGGCGGCGATCGTTCAGGATCTTTTGACGCTGGCCAGGAGAGGGGTGGTCGTATCAGAAGT GATCAATCTGAACCAGGTGATTGCCGATTCCATCAAAACGCCGGAATATGAAATGCTGAAATTCGATCATCCGGATGTGC GGATTCGCACCCATCTGGCGGAGGGACTCCTGAATATCAAGGGTTCCCCCATCCATTTAAGCAAAACGGTGATGAATCTG ATTGTCAACGCCGCGGAGGCTGTCTCCGGTTGCGGCGACGTGACAATACGGACGGAGAATCGTTACCTGGACATGCCTGT CCGGGGGTACGGCTCGATCCAGGAGGGGGATTACGCCGTCCTGTCCATATCGGACACGGGCAGCGGCATTTCTGCGGACG ATCTGGACAAGATATTTGAACCCTTCTACACCAAAAAAGTCATGGGGAAAAGCGGGACGGGGCTGGGGCTGGCCGTTGTC TGGGGGACCGTTAAGGATCATAACGGCTACATCGACGTACATAGTGAAGAGGGAAAAGGGACGACCTTCGCAATTTATTT TCCCGTGACCAGCGAGGGAAGAACGGAAGCGGGCAAGGTGATACCCCCTGAATCCTATGCCGGCGGGGGTGAGTCGATTC TGGTGGTGGATGATATTCCCGAACAGAGGGAAATGGCGCTCAGCATGCTCAAAAGGCTCGGGTATCGGGTTGATGCGGTT CCCGGCGGTGAAGCGGCGGTTGATTATCTCCGCTCCCAGGCGATGGATCTTGTGGTGCTGGACATGATCATGCCCCCAGG TATGGATGGTCTGGAAACTTATGAGCGGATTCTGGAAATCAACCCGGCGCAGAAGGCGATCATCGTCAGCGGGTTTTCCC GGACGGAACGGGTGGAAAAAGCGCAGAAACTCGGGGCCGGAGCTTACGTCCGGAAACCCTATATCCTGGAAAACCTCGGG CTGGCGGTTCGGAAGGAACTCGACCGGTGA
Upstream 100 bases:
>100_bases CGTGATACTTCTTCCTTCGTATCGCGTCCTAACATAATCGTAGCCGACGAGGCTGAATCCGTGGTAAAGAAAACTCGTGG ACATGCTTCCCCTCCGTTAA
Downstream 100 bases:
>100_bases AGATCAAATCAAAAGGAAAGTCATTAAGGTCATCTCTCAAAACTATGCCGGAAGTCATTTATCATGTATAATGACGCGGT CAATGTATCCTGCTCATTGA
Product: signal transduction histidine kinase
Products: NA
Alternate protein names: Blue-light-activated histidine kinase; Response regulator [H]
Number of amino acids: Translated: 649; Mature: 649
Protein sequence:
>649_residues MEIFEQFPLGVYVHFFQHKVRINRMNLFYSLRWKRMLGYTESEVGNTPDEWDKRVHPEDRKRCQEVLEAHLSGKTPVYES EYRLLCKNGTYKWIMDRGTVINRTADGKPLRVIGTHADITRRRLMEDELRESRQRLADIINFLPDATLVIDRESRVISWN QAIEKMTGISAEEMLGKGNYEYALPFYGERRPILIDHALRPDMQAKKQYTAFYRAGEILFGQSCVSALPSGELHLSASAS VLRDSRGEIIAAIECIRDNTELKKLQDRLNRAEKMEGLGRLAGGVAHDLNNVLGVLVGYSELLAETVPGDSPLKRYAKNI LQSGMRGAAIVQDLLTLARRGVVVSEVINLNQVIADSIKTPEYEMLKFDHPDVRIRTHLAEGLLNIKGSPIHLSKTVMNL IVNAAEAVSGCGDVTIRTENRYLDMPVRGYGSIQEGDYAVLSISDTGSGISADDLDKIFEPFYTKKVMGKSGTGLGLAVV WGTVKDHNGYIDVHSEEGKGTTFAIYFPVTSEGRTEAGKVIPPESYAGGGESILVVDDIPEQREMALSMLKRLGYRVDAV PGGEAAVDYLRSQAMDLVVLDMIMPPGMDGLETYERILEINPAQKAIIVSGFSRTERVEKAQKLGAGAYVRKPYILENLG LAVRKELDR
Sequences:
>Translated_649_residues MEIFEQFPLGVYVHFFQHKVRINRMNLFYSLRWKRMLGYTESEVGNTPDEWDKRVHPEDRKRCQEVLEAHLSGKTPVYES EYRLLCKNGTYKWIMDRGTVINRTADGKPLRVIGTHADITRRRLMEDELRESRQRLADIINFLPDATLVIDRESRVISWN QAIEKMTGISAEEMLGKGNYEYALPFYGERRPILIDHALRPDMQAKKQYTAFYRAGEILFGQSCVSALPSGELHLSASAS VLRDSRGEIIAAIECIRDNTELKKLQDRLNRAEKMEGLGRLAGGVAHDLNNVLGVLVGYSELLAETVPGDSPLKRYAKNI LQSGMRGAAIVQDLLTLARRGVVVSEVINLNQVIADSIKTPEYEMLKFDHPDVRIRTHLAEGLLNIKGSPIHLSKTVMNL IVNAAEAVSGCGDVTIRTENRYLDMPVRGYGSIQEGDYAVLSISDTGSGISADDLDKIFEPFYTKKVMGKSGTGLGLAVV WGTVKDHNGYIDVHSEEGKGTTFAIYFPVTSEGRTEAGKVIPPESYAGGGESILVVDDIPEQREMALSMLKRLGYRVDAV PGGEAAVDYLRSQAMDLVVLDMIMPPGMDGLETYERILEINPAQKAIIVSGFSRTERVEKAQKLGAGAYVRKPYILENLG LAVRKELDR >Mature_649_residues MEIFEQFPLGVYVHFFQHKVRINRMNLFYSLRWKRMLGYTESEVGNTPDEWDKRVHPEDRKRCQEVLEAHLSGKTPVYES EYRLLCKNGTYKWIMDRGTVINRTADGKPLRVIGTHADITRRRLMEDELRESRQRLADIINFLPDATLVIDRESRVISWN QAIEKMTGISAEEMLGKGNYEYALPFYGERRPILIDHALRPDMQAKKQYTAFYRAGEILFGQSCVSALPSGELHLSASAS VLRDSRGEIIAAIECIRDNTELKKLQDRLNRAEKMEGLGRLAGGVAHDLNNVLGVLVGYSELLAETVPGDSPLKRYAKNI LQSGMRGAAIVQDLLTLARRGVVVSEVINLNQVIADSIKTPEYEMLKFDHPDVRIRTHLAEGLLNIKGSPIHLSKTVMNL IVNAAEAVSGCGDVTIRTENRYLDMPVRGYGSIQEGDYAVLSISDTGSGISADDLDKIFEPFYTKKVMGKSGTGLGLAVV WGTVKDHNGYIDVHSEEGKGTTFAIYFPVTSEGRTEAGKVIPPESYAGGGESILVVDDIPEQREMALSMLKRLGYRVDAV PGGEAAVDYLRSQAMDLVVLDMIMPPGMDGLETYERILEINPAQKAIIVSGFSRTERVEKAQKLGAGAYVRKPYILENLG LAVRKELDR
Specific function: Photosensitive kinase and response regulator that is involved in increased bacterial virulence upon exposure to light [H]
COG id: COG0642
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1790436, Length=245, Percent_Identity=32.2448979591837, Blast_Score=134, Evalue=1e-32, Organism=Escherichia coli, GI1788549, Length=398, Percent_Identity=28.391959798995, Blast_Score=126, Evalue=4e-30, Organism=Escherichia coli, GI48994928, Length=408, Percent_Identity=28.921568627451, Blast_Score=107, Evalue=3e-24, Organism=Escherichia coli, GI1788713, Length=566, Percent_Identity=23.8515901060071, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1790300, Length=374, Percent_Identity=24.5989304812834, Blast_Score=77, Evalue=5e-15, Organism=Escherichia coli, GI1789808, Length=244, Percent_Identity=28.2786885245902, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI1786600, Length=245, Percent_Identity=24.4897959183673, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI1790861, Length=247, Percent_Identity=26.7206477732794, Blast_Score=70, Evalue=3e-13, Organism=Escherichia coli, GI1790346, Length=241, Percent_Identity=24.4813278008299, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI1790437, Length=115, Percent_Identity=35.6521739130435, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI145693157, Length=319, Percent_Identity=24.7648902821317, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1788381, Length=253, Percent_Identity=23.7154150197628, Blast_Score=63, Evalue=6e-11, Organism=Escherichia coli, GI87081816, Length=250, Percent_Identity=24.4, Blast_Score=63, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011006 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR001789 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS; PF00072 Response_reg [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 72460; Mature: 72460
Theoretical pI: Translated: 6.47; Mature: 6.47
Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEIFEQFPLGVYVHFFQHKVRINRMNLFYSLRWKRMLGYTESEVGNTPDEWDKRVHPEDR CCCHHHCCCHHHHHHHHHHHEEEEEEEEHHHHHHHHHCCCHHHCCCCCCHHHHCCCCHHH KRCQEVLEAHLSGKTPVYESEYRLLCKNGTYKWIMDRGTVINRTADGKPLRVIGTHADIT HHHHHHHHHHHCCCCCCCCCCCEEEECCCCEEEEECCCEEEEECCCCCCEEEEECCHHHH RRRLMEDELRESRQRLADIINFLPDATLVIDRESRVISWNQAIEKMTGISAEEMLGKGNY HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEHHHHHHHHHCCCHHHHHCCCCC EYALPFYGERRPILIDHALRPDMQAKKQYTAFYRAGEILFGQSCVSALPSGELHLSASAS EEECCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCEECCHHHHHCCCCCEEEECCHH VLRDSRGEIIAAIECIRDNTELKKLQDRLNRAEKMEGLGRLAGGVAHDLNNVLGVLVGYS HHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ELLAETVPGDSPLKRYAKNILQSGMRGAAIVQDLLTLARRGVVVSEVINLNQVIADSIKT HHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC PEYEMLKFDHPDVRIRTHLAEGLLNIKGSPIHLSKTVMNLIVNAAEAVSGCGDVTIRTEN CCHHEEECCCCCHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHCCCCCEEEEECC RYLDMPVRGYGSIQEGDYAVLSISDTGSGISADDLDKIFEPFYTKKVMGKSGTGLGLAVV EEEECCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEE WGTVKDHNGYIDVHSEEGKGTTFAIYFPVTSEGRTEAGKVIPPESYAGGGESILVVDDIP EEEEECCCCEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCC EQREMALSMLKRLGYRVDAVPGGEAAVDYLRSQAMDLVVLDMIMPPGMDGLETYERILEI HHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHC NPAQKAIIVSGFSRTERVEKAQKLGAGAYVRKPYILENLGLAVRKELDR CCCCCEEEEECCHHHHHHHHHHHCCCCCEECCCHHHHHCCHHHHHHCCC >Mature Secondary Structure MEIFEQFPLGVYVHFFQHKVRINRMNLFYSLRWKRMLGYTESEVGNTPDEWDKRVHPEDR CCCHHHCCCHHHHHHHHHHHEEEEEEEEHHHHHHHHHCCCHHHCCCCCCHHHHCCCCHHH KRCQEVLEAHLSGKTPVYESEYRLLCKNGTYKWIMDRGTVINRTADGKPLRVIGTHADIT HHHHHHHHHHHCCCCCCCCCCCEEEECCCCEEEEECCCEEEEECCCCCCEEEEECCHHHH RRRLMEDELRESRQRLADIINFLPDATLVIDRESRVISWNQAIEKMTGISAEEMLGKGNY HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEHHHHHHHHHCCCHHHHHCCCCC EYALPFYGERRPILIDHALRPDMQAKKQYTAFYRAGEILFGQSCVSALPSGELHLSASAS EEECCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCEECCHHHHHCCCCCEEEECCHH VLRDSRGEIIAAIECIRDNTELKKLQDRLNRAEKMEGLGRLAGGVAHDLNNVLGVLVGYS HHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ELLAETVPGDSPLKRYAKNILQSGMRGAAIVQDLLTLARRGVVVSEVINLNQVIADSIKT HHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC PEYEMLKFDHPDVRIRTHLAEGLLNIKGSPIHLSKTVMNLIVNAAEAVSGCGDVTIRTEN CCHHEEECCCCCHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHCCCCCEEEEECC RYLDMPVRGYGSIQEGDYAVLSISDTGSGISADDLDKIFEPFYTKKVMGKSGTGLGLAVV EEEECCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEE WGTVKDHNGYIDVHSEEGKGTTFAIYFPVTSEGRTEAGKVIPPESYAGGGESILVVDDIP EEEEECCCCEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCC EQREMALSMLKRLGYRVDAVPGGEAAVDYLRSQAMDLVVLDMIMPPGMDGLETYERILEI HHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHC NPAQKAIIVSGFSRTERVEKAQKLGAGAYVRKPYILENLGLAVRKELDR CCCCCEEEEECCHHHHHHHHHHHCCCCCEECCCHHHHHCCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA