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The map label for this gene is alsB [H]

Identifier: 85858886

GI number: 85858886

Start: 1069555

End: 1070553

Strand: Direct

Name: alsB [H]

Synonym: SYN_00391

Alternate gene names: 85858886

Gene position: 1069555-1070553 (Clockwise)

Preceding gene: 85858885

Following gene: 85858892

Centisome position: 33.64

GC content: 42.14

Gene sequence:

>999_bases
ATGGAAGGAGAGAAGATCATGAAAAGGCTTTTGAATTTATTGTCTGTCTTTATCCTCTTATTTGGACTATATGGACTGGT
TAACGCTGACGATATTAAAAGAAAGGAGATAACCAGATCAATGACTCTCAAAAAGGACCTACGCTTTGTAATAATCCCTA
AAGTAGTTCACCCTTGGTTTGATGAAGTAAATAAGGGTGCTCTATATCAAGCTGAATTACTTGAAAAACAACTGGGTATC
AAAGTTACTGTCGATTATATGGCGCCGAAATCGGCTGACGTAGCTGAGCAGAACTCAATTCTTGAAAAGGCCGCATCAAC
TGGTCCCGATGGCATTGCCATCGATCCTCTTGTTGCCATCGGCAATATGCCAGTTATAGACAAAATCAGAAAACAAGGTA
TTACGGTTATTGTATTCGACTCTCCGTCTCCGAAAGCCGGGATTTTAAGTGTCGGGAACGACTTTACTCAGCAGGGAGTT
ATTGCTGCTGAACGTCTGGTTGGGTTGATCGGAGGAACTGGAAAGGTTGCTGTAATGCAAGGTTTTCCGACGGCACCAAA
CCATAAAGAACGTTATGAGGCACAAATCGCCGTATTGAAAAAATATCCCAGCATAACAATTGTTGATGGAGGCATTGACA
ATGACGATATTCAAACTGCAAAGCAACAGGCAAAATCTGTTCTTGCATCGAATCCTGACCTGAAAGGTTACTTGTGCTGT
GACGCATCAGGTCCGATAGGCATTGCCGCAGCGATAAAGGAAGCCGGCAGGGTTGGTAAAGTAAAAGCTGTCGGTATGGA
TGGAATTAAACCGATACTTGAAGCAATAAAGCAAGGGGCACTAGAATCATCATCGTCAACCATTCCGAGAATGCAGGGCT
CAATGTCGATTTTGATGTTATGGCAAGCTTCAATCGGTGTTCCAATTCCACAAAGAATTGATACGGGCATTGATGTGATA
ACCAGTGATAATGTTGATTATTATTTAGGTTTGAACTGA

Upstream 100 bases:

>100_bases
ATTGTTTGTGTCTTTATAATCCTGTATTGTTAATCTGAGAACTTGGAAGATCGGCAATAAAAGAAGGGGTTCAAGTCCGA
ATAAATTACACACAGCTCAA

Downstream 100 bases:

>100_bases
TGCTCTTTTCTGTTCAATATTTCATTTAAATTTCCTTTGGATAAAAAAGTTGAATAATATATCACTGCAATGAAAAAAAC
ATCATCATTACGGGATTATC

Product: sugar ABC transporter periplasmic protein

Products: ADP; phosphate; ribose [Cytoplasm]; D-allose [Cytoplasm] [C]

Alternate protein names: ALBP [H]

Number of amino acids: Translated: 332; Mature: 332

Protein sequence:

>332_residues
MEGEKIMKRLLNLLSVFILLFGLYGLVNADDIKRKEITRSMTLKKDLRFVIIPKVVHPWFDEVNKGALYQAELLEKQLGI
KVTVDYMAPKSADVAEQNSILEKAASTGPDGIAIDPLVAIGNMPVIDKIRKQGITVIVFDSPSPKAGILSVGNDFTQQGV
IAAERLVGLIGGTGKVAVMQGFPTAPNHKERYEAQIAVLKKYPSITIVDGGIDNDDIQTAKQQAKSVLASNPDLKGYLCC
DASGPIGIAAAIKEAGRVGKVKAVGMDGIKPILEAIKQGALESSSSTIPRMQGSMSILMLWQASIGVPIPQRIDTGIDVI
TSDNVDYYLGLN

Sequences:

>Translated_332_residues
MEGEKIMKRLLNLLSVFILLFGLYGLVNADDIKRKEITRSMTLKKDLRFVIIPKVVHPWFDEVNKGALYQAELLEKQLGI
KVTVDYMAPKSADVAEQNSILEKAASTGPDGIAIDPLVAIGNMPVIDKIRKQGITVIVFDSPSPKAGILSVGNDFTQQGV
IAAERLVGLIGGTGKVAVMQGFPTAPNHKERYEAQIAVLKKYPSITIVDGGIDNDDIQTAKQQAKSVLASNPDLKGYLCC
DASGPIGIAAAIKEAGRVGKVKAVGMDGIKPILEAIKQGALESSSSTIPRMQGSMSILMLWQASIGVPIPQRIDTGIDVI
TSDNVDYYLGLN
>Mature_332_residues
MEGEKIMKRLLNLLSVFILLFGLYGLVNADDIKRKEITRSMTLKKDLRFVIIPKVVHPWFDEVNKGALYQAELLEKQLGI
KVTVDYMAPKSADVAEQNSILEKAASTGPDGIAIDPLVAIGNMPVIDKIRKQGITVIVFDSPSPKAGILSVGNDFTQQGV
IAAERLVGLIGGTGKVAVMQGFPTAPNHKERYEAQIAVLKKYPSITIVDGGIDNDDIQTAKQQAKSVLASNPDLKGYLCC
DASGPIGIAAAIKEAGRVGKVKAVGMDGIKPILEAIKQGALESSSSTIPRMQGSMSILMLWQASIGVPIPQRIDTGIDVI
TSDNVDYYLGLN

Specific function: Part of the binding-protein-dependent transport system AlsBAC for D-allose [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790526, Length=260, Percent_Identity=23.4615384615385, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 35627; Mature: 35627

Theoretical pI: Translated: 8.16; Mature: 8.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEGEKIMKRLLNLLSVFILLFGLYGLVNADDIKRKEITRSMTLKKDLRFVIIPKVVHPWF
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCEEEEEHHHHHHHH
DEVNKGALYQAELLEKQLGIKVTVDYMAPKSADVAEQNSILEKAASTGPDGIAIDPLVAI
HHHCCCCCHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECHHHHC
GNMPVIDKIRKQGITVIVFDSPSPKAGILSVGNDFTQQGVIAAERLVGLIGGTGKVAVMQ
CCCCHHHHHHHCCCEEEEECCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEE
GFPTAPNHKERYEAQIAVLKKYPSITIVDGGIDNDDIQTAKQQAKSVLASNPDLKGYLCC
CCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEE
DASGPIGIAAAIKEAGRVGKVKAVGMDGIKPILEAIKQGALESSSSTIPRMQGSMSILML
CCCCCCHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCCCCHHCCCCEEEEE
WQASIGVPIPQRIDTGIDVITSDNVDYYLGLN
EEHHCCCCCCHHHCCCCEEEECCCCCEEEECC
>Mature Secondary Structure
MEGEKIMKRLLNLLSVFILLFGLYGLVNADDIKRKEITRSMTLKKDLRFVIIPKVVHPWF
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCEEEEEHHHHHHHH
DEVNKGALYQAELLEKQLGIKVTVDYMAPKSADVAEQNSILEKAASTGPDGIAIDPLVAI
HHHCCCCCHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECHHHHC
GNMPVIDKIRKQGITVIVFDSPSPKAGILSVGNDFTQQGVIAAERLVGLIGGTGKVAVMQ
CCCCHHHHHHHCCCEEEEECCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEE
GFPTAPNHKERYEAQIAVLKKYPSITIVDGGIDNDDIQTAKQQAKSVLASNPDLKGYLCC
CCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEE
DASGPIGIAAAIKEAGRVGKVKAVGMDGIKPILEAIKQGALESSSSTIPRMQGSMSILML
CCCCCCHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCCCCHHCCCCEEEEE
WQASIGVPIPQRIDTGIDVITSDNVDYYLGLN
EEHHCCCCCCHHHCCCCEEEECCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; ribose [Periplasm]; D-allose [Periplasm]; ATP [C]

Specific reaction: ATP + H2O + ribose [Periplasm] = ADP + phosphate + ribose [Cytoplasm] D-allose [Periplasm] + ATP + H2O = D-allose [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 8576032; 9401019; 10064713 [H]