| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is alr [H]
Identifier: 85858827
GI number: 85858827
Start: 1019036
End: 1021021
Strand: Direct
Name: alr [H]
Synonym: SYN_01482
Alternate gene names: 85858827
Gene position: 1019036-1021021 (Clockwise)
Preceding gene: 85858826
Following gene: 85858828
Centisome position: 32.05
GC content: 56.45
Gene sequence:
>1986_bases ATGACACAATTGAAAGAACAAGCATACCGAAGCTGGGTTGAAGTCGATCTGGACAGTTTTACCTGGAACTGGGCGGAACT GAGACGGCTTGTCGGTCCGGCGGTCCGGGTGCTTCAGGTGGTCAAGGCGGATGCCTACGGCCACGGCGCCATCGAGATCT CCCATACGGCACTGAAAAACGGCGCCGCCTGCCTCGGGGTAGCCAATGCCGACGAAGGCGTACAGCTTCGGGTCAGCGGG ATCACCGCGCCGATCATTATCCTCAGTCCTTCCACAGGCGGGGAGATTCGGGAGATCATTAAGTATGGATTGACCCCGTC TCTGTCCGATCTTCTTTTTGCTTCGGAATTTCAGCGGCATCTGGCAAGGGCGGGCGTTACGTCTCCCGTTCATATCGAAA TCGATACAGGTATGGGGCGGGGCGGCATGCTTTGTGAGGAAGCCCCTGCGATCATTCGGAATATATTTGGCCTTCCGAAC ATCGCAGTCGAGGGGATTTTTACTCACCTGGCCTCCAGCGAGGTTTGTGTCGATTACAATGAACAGCAATGGAGCCTGTT TCGGGAACTGACCGACAGGCTGAACGCAATGGGAATCTCCATTCCGATCAAGCACATGGCCAACAGCGGGGCGATTCTCA ATTATCCCCGGTTTCATCTGGACATGGTGCGTCCCGGCCTGATGTCTTACGGGATCCACCCGGCTCCTTCCACGGAGGAC AGAGCGGATCTGCGGCCGGTCATGAGTTTCAAGACCCGGGTCGTTCTCCTCAAGGAGTTTCCTGCGGGAGCAAGCATCGG GTACAACCGGACCTACGTTACGGAACGGCCTTCGCGGATTGCGACGCTTCCTGTCGGCTATGGAGACGGTTATGGCGTGA TTCTGTCCAATCAGGGGGAGGTGCTGATCCGGGGAAGGCGGGCGCCTGTTGTCGGCCGGATTTCCATGGACATGACCACG GTGGATGTAAGCGCGATTCCTGACTGCCATATTGGCGATGAAGTGGTCCTTATGGGGCGGCAGGGAGAAGAAGTCATTTC TGCCAATGATATCGCCGTCCGGGTCCGGACCATCAGCTATGATATTCTCTGCGCCCTGGGAAAGCGGGCTCCCCGGATTT TTCTGCAGAAAGGGAAGACTGATGCTGTCGAGCCGCGTCTGAGAAGGATTTTTATTCCCCATGAGGAGCGGTCACGGGCA AGGATCGACGGGATGATCCGCCAGTGTTTTCAGGTTCGGGCGCGCAGCGAGGAATTGGGGGACGCCATTTTCTACGAAAT GTTCGAGGCGCTCTTCGGCAAGGATGACCGGCAACTGGAATTGCGCTCGAATTTCCGGTATGAAATTGCCGTTTCAGAAC CTGCCGGAGAAGAGGCACCGGAGAGGGAAGGGGATTCCGATGATTTCCGGGTGACAACCCGGATTGAATATACCAAGGTT TTCCGAAATCCTGTCTTCCTGATCGGCTGTGCGGGTAACAGCGAGCAACTGTCCTCGTTTTTTGAAGATCCGCTTTGTGA ATACCGATGGCTTCTTCAGGATGGCCATTTCCCCGTGCGTGACCGGGACTTCCGGGTGCAGCGGGTACGGATCGATTCGG AGGACGTTCCGGTGATCCGCACGGAAAATACGGGGCGCGGCTATGAAGTCTGGTGCGGCGGCGAGTATCTGCGGGAAAAG CTGAGCCGGCAGGTCCGGGTGGAACTGGAGATCGTCACCCGCACGGCGCGAAGCAGGCGCTTTTTTTCCGTTTACCTTGT TTATCCTACGAGAGGACTGGACATCACATTCTGCTATGAAGGAACGCCGATTGCCTCCGTCCGGGAGGTCAGTTTTTTTG CCGGCAGGCAACCTTATCCGGAAATTACCAGGGAAACCGGGCGCTCCATTCATCTCCGGATAAGGGATGATGAATGGGTC TTCCCCAACAGCGGTGTGACCTTTCTGTGGGACGATGCGGGATCTGAACGCGTCAAAGGGCAATGA
Upstream 100 bases:
>100_bases GCTTTATATTCAACGGTGTGAGACCCTCCGCGTTTGTCCGCCGGAAGCGGTCTGGGACGGCGTCTTCACGATGACGTCAA AATAAAATTTGAGCGGGGTT
Downstream 100 bases:
>100_bases ACAAAATGATGGTCCGTGCGAAACGCGGAGAAATAACAGGAAAAAATAATTTTTTAATGAGCGGGATTGGCAGTCTGATT CCCGGGAGATGAAAAGAGGG
Product: alanine racemase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 661; Mature: 660
Protein sequence:
>661_residues MTQLKEQAYRSWVEVDLDSFTWNWAELRRLVGPAVRVLQVVKADAYGHGAIEISHTALKNGAACLGVANADEGVQLRVSG ITAPIIILSPSTGGEIREIIKYGLTPSLSDLLFASEFQRHLARAGVTSPVHIEIDTGMGRGGMLCEEAPAIIRNIFGLPN IAVEGIFTHLASSEVCVDYNEQQWSLFRELTDRLNAMGISIPIKHMANSGAILNYPRFHLDMVRPGLMSYGIHPAPSTED RADLRPVMSFKTRVVLLKEFPAGASIGYNRTYVTERPSRIATLPVGYGDGYGVILSNQGEVLIRGRRAPVVGRISMDMTT VDVSAIPDCHIGDEVVLMGRQGEEVISANDIAVRVRTISYDILCALGKRAPRIFLQKGKTDAVEPRLRRIFIPHEERSRA RIDGMIRQCFQVRARSEELGDAIFYEMFEALFGKDDRQLELRSNFRYEIAVSEPAGEEAPEREGDSDDFRVTTRIEYTKV FRNPVFLIGCAGNSEQLSSFFEDPLCEYRWLLQDGHFPVRDRDFRVQRVRIDSEDVPVIRTENTGRGYEVWCGGEYLREK LSRQVRVELEIVTRTARSRRFFSVYLVYPTRGLDITFCYEGTPIASVREVSFFAGRQPYPEITRETGRSIHLRIRDDEWV FPNSGVTFLWDDAGSERVKGQ
Sequences:
>Translated_661_residues MTQLKEQAYRSWVEVDLDSFTWNWAELRRLVGPAVRVLQVVKADAYGHGAIEISHTALKNGAACLGVANADEGVQLRVSG ITAPIIILSPSTGGEIREIIKYGLTPSLSDLLFASEFQRHLARAGVTSPVHIEIDTGMGRGGMLCEEAPAIIRNIFGLPN IAVEGIFTHLASSEVCVDYNEQQWSLFRELTDRLNAMGISIPIKHMANSGAILNYPRFHLDMVRPGLMSYGIHPAPSTED RADLRPVMSFKTRVVLLKEFPAGASIGYNRTYVTERPSRIATLPVGYGDGYGVILSNQGEVLIRGRRAPVVGRISMDMTT VDVSAIPDCHIGDEVVLMGRQGEEVISANDIAVRVRTISYDILCALGKRAPRIFLQKGKTDAVEPRLRRIFIPHEERSRA RIDGMIRQCFQVRARSEELGDAIFYEMFEALFGKDDRQLELRSNFRYEIAVSEPAGEEAPEREGDSDDFRVTTRIEYTKV FRNPVFLIGCAGNSEQLSSFFEDPLCEYRWLLQDGHFPVRDRDFRVQRVRIDSEDVPVIRTENTGRGYEVWCGGEYLREK LSRQVRVELEIVTRTARSRRFFSVYLVYPTRGLDITFCYEGTPIASVREVSFFAGRQPYPEITRETGRSIHLRIRDDEWV FPNSGVTFLWDDAGSERVKGQ >Mature_660_residues TQLKEQAYRSWVEVDLDSFTWNWAELRRLVGPAVRVLQVVKADAYGHGAIEISHTALKNGAACLGVANADEGVQLRVSGI TAPIIILSPSTGGEIREIIKYGLTPSLSDLLFASEFQRHLARAGVTSPVHIEIDTGMGRGGMLCEEAPAIIRNIFGLPNI AVEGIFTHLASSEVCVDYNEQQWSLFRELTDRLNAMGISIPIKHMANSGAILNYPRFHLDMVRPGLMSYGIHPAPSTEDR ADLRPVMSFKTRVVLLKEFPAGASIGYNRTYVTERPSRIATLPVGYGDGYGVILSNQGEVLIRGRRAPVVGRISMDMTTV DVSAIPDCHIGDEVVLMGRQGEEVISANDIAVRVRTISYDILCALGKRAPRIFLQKGKTDAVEPRLRRIFIPHEERSRAR IDGMIRQCFQVRARSEELGDAIFYEMFEALFGKDDRQLELRSNFRYEIAVSEPAGEEAPEREGDSDDFRVTTRIEYTKVF RNPVFLIGCAGNSEQLSSFFEDPLCEYRWLLQDGHFPVRDRDFRVQRVRIDSEDVPVIRTENTGRGYEVWCGGEYLREKL SRQVRVELEIVTRTARSRRFFSVYLVYPTRGLDITFCYEGTPIASVREVSFFAGRQPYPEITRETGRSIHLRIRDDEWVF PNSGVTFLWDDAGSERVKGQ
Specific function: Provides the D-alanine required for cell wall biosynthesis [H]
COG id: COG0787
COG function: function code M; Alanine racemase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the alanine racemase family [H]
Homologues:
Organism=Escherichia coli, GI1790487, Length=358, Percent_Identity=32.122905027933, Blast_Score=159, Evalue=4e-40, Organism=Escherichia coli, GI1787439, Length=364, Percent_Identity=29.1208791208791, Blast_Score=142, Evalue=5e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000821 - InterPro: IPR009006 - InterPro: IPR011079 - InterPro: IPR001608 - InterPro: IPR020622 [H]
Pfam domain/function: PF00842 Ala_racemase_C; PF01168 Ala_racemase_N [H]
EC number: =5.1.1.1 [H]
Molecular weight: Translated: 74531; Mature: 74400
Theoretical pI: Translated: 6.27; Mature: 6.27
Prosite motif: PS00395 ALANINE_RACEMASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQLKEQAYRSWVEVDLDSFTWNWAELRRLVGPAVRVLQVVKADAYGHGAIEISHTALKN CCCHHHHHHHHHEEEECCCCEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHCC GAACLGVANADEGVQLRVSGITAPIIILSPSTGGEIREIIKYGLTPSLSDLLFASEFQRH CCEEEEECCCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHH LARAGVTSPVHIEIDTGMGRGGMLCEEAPAIIRNIFGLPNIAVEGIFTHLASSEVCVDYN HHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEECC EQQWSLFRELTDRLNAMGISIPIKHMANSGAILNYPRFHLDMVRPGLMSYGIHPAPSTED HHHHHHHHHHHHHHHHCCCEEEHHHCCCCCCEECCCCHHHHHHCCCHHHCCCCCCCCCCC RADLRPVMSFKTRVVLLKEFPAGASIGYNRTYVTERPSRIATLPVGYGDGYGVILSNQGE HHHHHHHHHHCEEEEEEEECCCCCCCCCCCEEEECCCCEEEEEEEECCCCEEEEECCCCC VLIRGRRAPVVGRISMDMTTVDVSAIPDCHIGDEVVLMGRQGEEVISANDIAVRVRTISY EEEEECCCCEEEEEEECEEEEEHCCCCCCCCCCCEEEECCCCCCEEECCCEEEEEEEEEE DILCALGKRAPRIFLQKGKTDAVEPRLRRIFIPHEERSRARIDGMIRQCFQVRARSEELG EHHHHHCCCCCEEEEECCCCCCCCCCHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH DAIFYEMFEALFGKDDRQLELRSNFRYEIAVSEPAGEEAPEREGDSDDFRVTTRIEYTKV HHHHHHHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEHHH FRNPVFLIGCAGNSEQLSSFFEDPLCEYRWLLQDGHFPVRDRDFRVQRVRIDSEDVPVIR HCCCEEEEEECCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCEEE TENTGRGYEVWCGGEYLREKLSRQVRVELEIVTRTARSRRFFSVYLVYPTRGLDITFCYE ECCCCCCEEEEECHHHHHHHHCHHEEEEEEEEEHHHCCCEEEEEEEEEECCCCEEEEEEC GTPIASVREVSFFAGRQPYPEITRETGRSIHLRIRDDEWVFPNSGVTFLWDDAGSERVKG CCCCCHHHHHHHHCCCCCCHHHHHHCCCEEEEEECCCCEECCCCCEEEEECCCCCCCCCC Q C >Mature Secondary Structure TQLKEQAYRSWVEVDLDSFTWNWAELRRLVGPAVRVLQVVKADAYGHGAIEISHTALKN CCHHHHHHHHHEEEECCCCEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHCC GAACLGVANADEGVQLRVSGITAPIIILSPSTGGEIREIIKYGLTPSLSDLLFASEFQRH CCEEEEECCCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHH LARAGVTSPVHIEIDTGMGRGGMLCEEAPAIIRNIFGLPNIAVEGIFTHLASSEVCVDYN HHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEECC EQQWSLFRELTDRLNAMGISIPIKHMANSGAILNYPRFHLDMVRPGLMSYGIHPAPSTED HHHHHHHHHHHHHHHHCCCEEEHHHCCCCCCEECCCCHHHHHHCCCHHHCCCCCCCCCCC RADLRPVMSFKTRVVLLKEFPAGASIGYNRTYVTERPSRIATLPVGYGDGYGVILSNQGE HHHHHHHHHHCEEEEEEEECCCCCCCCCCCEEEECCCCEEEEEEEECCCCEEEEECCCCC VLIRGRRAPVVGRISMDMTTVDVSAIPDCHIGDEVVLMGRQGEEVISANDIAVRVRTISY EEEEECCCCEEEEEEECEEEEEHCCCCCCCCCCCEEEECCCCCCEEECCCEEEEEEEEEE DILCALGKRAPRIFLQKGKTDAVEPRLRRIFIPHEERSRARIDGMIRQCFQVRARSEELG EHHHHHCCCCCEEEEECCCCCCCCCCHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH DAIFYEMFEALFGKDDRQLELRSNFRYEIAVSEPAGEEAPEREGDSDDFRVTTRIEYTKV HHHHHHHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEHHH FRNPVFLIGCAGNSEQLSSFFEDPLCEYRWLLQDGHFPVRDRDFRVQRVRIDSEDVPVIR HCCCEEEEEECCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCEEE TENTGRGYEVWCGGEYLREKLSRQVRVELEIVTRTARSRRFFSVYLVYPTRGLDITFCYE ECCCCCCEEEEECHHHHHHHHCHHEEEEEEEEEHHHCCCEEEEEEEEEECCCCEEEEEEC GTPIASVREVSFFAGRQPYPEITRETGRSIHLRIRDDEWVFPNSGVTFLWDDAGSERVKG CCCCCHHHHHHHHCCCCCCHHHHHHCCCEEEEEECCCCEECCCCCEEEEECCCCCCCCCC Q C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA