| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is nudF [H]
Identifier: 85858482
GI number: 85858482
Start: 637747
End: 638301
Strand: Direct
Name: nudF [H]
Synonym: SYN_00539
Alternate gene names: 85858482
Gene position: 637747-638301 (Clockwise)
Preceding gene: 85858480
Following gene: 85858483
Centisome position: 20.06
GC content: 51.17
Gene sequence:
>555_bases ATGCCACCAAAAGACTGGACCGTTTTGTCAAGCAGATCTGATCGTTCCAATCGGTTCCTTACCCTCCGGACTGATCGAGC CCTTTCTCCCCGGACCGGCCTGTCTTCGGACTTCGTTGTTTTCGAGTCGTCTCCCTGGGTCAATGTCATTCCTCTGACCT CTCAAAATGAAGTCGTGCTGGTCCATCAGTACCGTCACGGCACCCGGACGGTGACTCTTGAAATTCCAGGTGGGCTTGTT GAGGATTACGATTCGCCGGCGGGGGCTGCTCGGCGAGAACTTCAGGAGGAAACCGGATATGTGGATACTTCCCTGATTTC CCTGGGGACGGTATACCCCAATCCAGCGATCCAGAATAATCTCTGCTATACTTTCCTGGCTAAGGACGTTTATCTTGCCG GAGAGCAGAACCTGGATAAAAACGAGGATATTGAAGTCATTCTGAAGCCTTTGGATGAGATCCCCAAACTGATCCGGGAG GGCGATATCAGCCATGCCCTTGTGATTGCGGCCTTTTATCGATTTTATATGGAATACCTGCAACAGGGAAAATGA
Upstream 100 bases:
>100_bases TATCAGTGAATTGAAATAATTCGTTATGCATGTTAAACGACTCTGAAAAATTGGGAATTGTTTATCATATTGATGTTTAT GAAAAGGAGCTGGTTCTGTT
Downstream 100 bases:
>100_bases AATTTCCCGTTTCATCATAAAGAAAAAGCATTATGCTGTTGATCTATCCCCCCGTTGTCAAGCCCTGTGAGCCTCCGGCT GGTATAGCTAAACTGGCCGG
Product: phosphohydrolase
Products: NA
Alternate protein names: ADP-ribose diphosphatase; ADP-ribose phosphohydrolase; ASPPase; Adenosine diphosphoribose pyrophosphatase; ADPR-PPase [H]
Number of amino acids: Translated: 184; Mature: 183
Protein sequence:
>184_residues MPPKDWTVLSSRSDRSNRFLTLRTDRALSPRTGLSSDFVVFESSPWVNVIPLTSQNEVVLVHQYRHGTRTVTLEIPGGLV EDYDSPAGAARRELQEETGYVDTSLISLGTVYPNPAIQNNLCYTFLAKDVYLAGEQNLDKNEDIEVILKPLDEIPKLIRE GDISHALVIAAFYRFYMEYLQQGK
Sequences:
>Translated_184_residues MPPKDWTVLSSRSDRSNRFLTLRTDRALSPRTGLSSDFVVFESSPWVNVIPLTSQNEVVLVHQYRHGTRTVTLEIPGGLV EDYDSPAGAARRELQEETGYVDTSLISLGTVYPNPAIQNNLCYTFLAKDVYLAGEQNLDKNEDIEVILKPLDEIPKLIRE GDISHALVIAAFYRFYMEYLQQGK >Mature_183_residues PPKDWTVLSSRSDRSNRFLTLRTDRALSPRTGLSSDFVVFESSPWVNVIPLTSQNEVVLVHQYRHGTRTVTLEIPGGLVE DYDSPAGAARRELQEETGYVDTSLISLGTVYPNPAIQNNLCYTFLAKDVYLAGEQNLDKNEDIEVILKPLDEIPKLIREG DISHALVIAAFYRFYMEYLQQGK
Specific function: Acts on ADP-mannose and ADP-glucose as well as ADP- ribose. Prevents glycogen biosynthesis. The reaction catalyzed by this enzyme is a limiting step of the gluconeogenic process [H]
COG id: COG0494
COG function: function code LR; NTP pyrophosphohydrolases including oxidative damage repair enzymes
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 nudix hydrolase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004385 - InterPro: IPR020476 - InterPro: IPR020084 - InterPro: IPR000086 - InterPro: IPR015797 [H]
Pfam domain/function: PF00293 NUDIX [H]
EC number: =3.6.1.13 [H]
Molecular weight: Translated: 20809; Mature: 20678
Theoretical pI: Translated: 4.73; Mature: 4.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPPKDWTVLSSRSDRSNRFLTLRTDRALSPRTGLSSDFVVFESSPWVNVIPLTSQNEVVL CCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCEEE VHQYRHGTRTVTLEIPGGLVEDYDSPAGAARRELQEETGYVDTSLISLGTVYPNPAIQNN EEEECCCCEEEEEEECCCHHHCCCCCCHHHHHHHHHHCCCCCHHHEEECCCCCCCCCCCC LCYTFLAKDVYLAGEQNLDKNEDIEVILKPLDEIPKLIREGDISHALVIAAFYRFYMEYL CEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH QQGK HCCC >Mature Secondary Structure PPKDWTVLSSRSDRSNRFLTLRTDRALSPRTGLSSDFVVFESSPWVNVIPLTSQNEVVL CCCCCEEEECCCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCEEE VHQYRHGTRTVTLEIPGGLVEDYDSPAGAARRELQEETGYVDTSLISLGTVYPNPAIQNN EEEECCCCEEEEEEECCCHHHCCCCCCHHHHHHHHHHCCCCCHHHEEECCCCCCCCCCCC LCYTFLAKDVYLAGEQNLDKNEDIEVILKPLDEIPKLIREGDISHALVIAAFYRFYMEYL CEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH QQGK HCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8969508; 9384377; 10542272 [H]