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The map label for this gene is ntrC [H]

Identifier: 85857913

GI number: 85857913

Start: 71250

End: 71660

Strand: Direct

Name: ntrC [H]

Synonym: SYN_00173

Alternate gene names: 85857913

Gene position: 71250-71660 (Clockwise)

Preceding gene: 85857912

Following gene: 85857914

Centisome position: 2.24

GC content: 59.12

Gene sequence:

>411_bases
GTGTCGGGAGTAACTGAGGGGGCAAAGATGCCGCGTATTCTGGTTGTGGAAGATGATGAACCGCTGCGGTCCGTTCTGAG
GCAGATTCTGGAACGAACAGGCCATGAAGTGGCTGAAGCGGCGGATGGCAGGGCGGCCATGGAGATTCAGCGTCAGAAGG
GAGCCGACCTTGTGATTACGGACATCATCATGCCGGAAGTGGACGGCATCGAAACGATCATGGTCCTGCGGCGGGAATTT
CCGTCGGTCAAGATCATCGCCATCTCCGGGGGCAGCCGCGTCGGTCCCAGGGAGTTCCTGAATCTTGCCAGGGTGCTGGG
GGCGCATCGGACGCTTCATAAACCTTTTGCTCTGCAGGAGATGCTCGATGCCGTTGATGAGCTCCTCGGCGAAGGCGGTG
CATCCGGTTAG

Upstream 100 bases:

>100_bases
AGATCATTGAAGAAAAGGCGAGAAAACTGGGCATCCGGGAATTTATTTTCAAACCGTTCATCATGAGCACAATGGCACAG
GTTATTCGGGATGTCCTGGA

Downstream 100 bases:

>100_bases
AGGAGAACGTTCCGGAGCAGACGAAAGGAGCCGGATGTTTCATGTGCGTGTTGAATTCCGATCAACTGGAACCGGGGATG
ATACTGGCCGGACCGATCTT

Product: response regulator receiver domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 135

Protein sequence:

>136_residues
MSGVTEGAKMPRILVVEDDEPLRSVLRQILERTGHEVAEAADGRAAMEIQRQKGADLVITDIIMPEVDGIETIMVLRREF
PSVKIIAISGGSRVGPREFLNLARVLGAHRTLHKPFALQEMLDAVDELLGEGGASG

Sequences:

>Translated_136_residues
MSGVTEGAKMPRILVVEDDEPLRSVLRQILERTGHEVAEAADGRAAMEIQRQKGADLVITDIIMPEVDGIETIMVLRREF
PSVKIIAISGGSRVGPREFLNLARVLGAHRTLHKPFALQEMLDAVDELLGEGGASG
>Mature_135_residues
SGVTEGAKMPRILVVEDDEPLRSVLRQILERTGHEVAEAADGRAAMEIQRQKGADLVITDIIMPEVDGIETIMVLRREFP
SVKIIAISGGSRVGPREFLNLARVLGAHRTLHKPFALQEMLDAVDELLGEGGASG

Specific function: Member of the two-component regulatory system ntrB/ntrC involved in the activation of nitrogen assimilatory genes such as glnA. NtrC is phosphorylated by ntrB and interacts with sigma-54 [H]

COG id: COG0784

COG function: function code T; FOG: CheY-like receiver

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR011006
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR002078
- InterPro:   IPR010114
- InterPro:   IPR001789 [H]

Pfam domain/function: PF02954 HTH_8; PF00072 Response_reg; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 14752; Mature: 14621

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGVTEGAKMPRILVVEDDEPLRSVLRQILERTGHEVAEAADGRAAMEIQRQKGADLVIT
CCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCHHHHHHCCCHHHHHHHHHCCCCEEEE
DIIMPEVDGIETIMVLRREFPSVKIIAISGGSRVGPREFLNLARVLGAHRTLHKPFALQE
HHHCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHH
MLDAVDELLGEGGASG
HHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SGVTEGAKMPRILVVEDDEPLRSVLRQILERTGHEVAEAADGRAAMEIQRQKGADLVIT
CCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCHHHHHHCCCHHHHHHHHHCCCCEEEE
DIIMPEVDGIETIMVLRREFPSVKIIAISGGSRVGPREFLNLARVLGAHRTLHKPFALQE
HHHCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHH
MLDAVDELLGEGGASG
HHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1661370 [H]