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The map label for this gene is exbD2 [H]

Identifier: 85375575

GI number: 85375575

Start: 2770527

End: 2770991

Strand: Reverse

Name: exbD2 [H]

Synonym: ELI_13740

Alternate gene names: 85375575

Gene position: 2770991-2770527 (Counterclockwise)

Preceding gene: 85375576

Following gene: 85375574

Centisome position: 90.78

GC content: 60.86

Gene sequence:

>465_bases
ATGGCAATGTCAGGTGGTAAGGACGATGGCAGCCCGATGCTGGACATGAACATGACGCCGTTGATCGACGTCCTGCTCGT
GCTCCTCATCATGTTCATCATCACCATCCCGGTCGCGACCCACTCGGTCAATATCGACCTGCCGCAACCGAACCCCAACC
CCCCGCCCGAGGACATGATCGATCCGATCAAGAACAAGATCGTCCTCACGCAGACCGGCGAGATCCTCTGGAACGGTGAA
GGCATCGACCAGAGCGAACTGGTTCGCAACCTGCAGCTCACCCGGGACATCGTGCCCGAGCCGGAGCTCCAGTTCGAACC
CGAAGCGCAGGCGAGCTACGATCTCTCGGCGCGCGTACTGAACGTGATCAAGAGTTCGGGCGTGACCAAGTTCGGCTTCG
TCGGCAACGAGCAATACCGCGTGTTCGGCAAGTCGCCCAGCGCACCGGCGGGTGGCCAGCAGTAA

Upstream 100 bases:

>100_bases
ACAATGTGCAGGCGGCGGGCTACCCGACCGTCGGCTTCATCTCCAACCCGGTCGACCCCAACGGTTGATCGGGAACAGAG
AAACACAGGAGTAACCGACC

Downstream 100 bases:

>100_bases
GCCGGCCACACCCAAACAGATGCAGAAAGGGGCGGAGCGATCCGCCCCTTTTTTTTGCTGGGCATGCGAGACATGCGCCA
GCGCGTGCGAACTCTCTACG

Product: biopolymer transport exbD transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 153

Protein sequence:

>154_residues
MAMSGGKDDGSPMLDMNMTPLIDVLLVLLIMFIITIPVATHSVNIDLPQPNPNPPPEDMIDPIKNKIVLTQTGEILWNGE
GIDQSELVRNLQLTRDIVPEPELQFEPEAQASYDLSARVLNVIKSSGVTKFGFVGNEQYRVFGKSPSAPAGGQQ

Sequences:

>Translated_154_residues
MAMSGGKDDGSPMLDMNMTPLIDVLLVLLIMFIITIPVATHSVNIDLPQPNPNPPPEDMIDPIKNKIVLTQTGEILWNGE
GIDQSELVRNLQLTRDIVPEPELQFEPEAQASYDLSARVLNVIKSSGVTKFGFVGNEQYRVFGKSPSAPAGGQQ
>Mature_153_residues
AMSGGKDDGSPMLDMNMTPLIDVLLVLLIMFIITIPVATHSVNIDLPQPNPNPPPEDMIDPIKNKIVLTQTGEILWNGEG
IDQSELVRNLQLTRDIVPEPELQFEPEAQASYDLSARVLNVIKSSGVTKFGFVGNEQYRVFGKSPSAPAGGQQ

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=141, Percent_Identity=26.9503546099291, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 16785; Mature: 16653

Theoretical pI: Translated: 4.15; Mature: 4.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMSGGKDDGSPMLDMNMTPLIDVLLVLLIMFIITIPVATHSVNIDLPQPNPNPPPEDMI
CCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHH
DPIKNKIVLTQTGEILWNGEGIDQSELVRNLQLTRDIVPEPELQFEPEAQASYDLSARVL
HHHHCCEEEEECCCEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
NVIKSSGVTKFGFVGNEQYRVFGKSPSAPAGGQQ
HHHHHCCCEEEEECCCCEEEEEECCCCCCCCCCC
>Mature Secondary Structure 
AMSGGKDDGSPMLDMNMTPLIDVLLVLLIMFIITIPVATHSVNIDLPQPNPNPPPEDMI
CCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHH
DPIKNKIVLTQTGEILWNGEGIDQSELVRNLQLTRDIVPEPELQFEPEAQASYDLSARVL
HHHHCCEEEEECCCEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
NVIKSSGVTKFGFVGNEQYRVFGKSPSAPAGGQQ
HHHHHCCCEEEEECCCCEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371459 [H]