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The map label for this gene is capD [H]

Identifier: 85375501

GI number: 85375501

Start: 2693409

End: 2695361

Strand: Direct

Name: capD [H]

Synonym: ELI_13370

Alternate gene names: 85375501

Gene position: 2693409-2695361 (Clockwise)

Preceding gene: 85375499

Following gene: 85375507

Centisome position: 88.24

GC content: 58.42

Gene sequence:

>1953_bases
TTGAAATCAAGCGGCATCCGCAAAACGGGCGAATTTCTCGAAAAACGCCTTGTGCGTATTTTGCGTTGGGCGGTGAACCT
CAATCGGTTCGCAAAGCTCGTGGCCGTTCTCACGGTCGACCTCGCATTGTGCGTGGCGGCGGTTATCATAGCTTTCTCAT
TGCGGTTCGGAGAATGGGAATTCTGGTCCGGCGCAATTCAGTCGGTGGTGGTCGTGGCGGTCGCGCTGTGGTTGCCGATT
TTCTATCTCGCCGGCATTTATCGAACCGTTGTCCGCTTCATCGGTACGCGTACCTTGATGGGGATCGCCGTCTCGTGCGG
TCTGATGGCAGTCGGTCTGGCCTTCGCCTTCACGCTCAATTCAACCCCGGGAATCCCGCGCACCGTTGCGTTCATCCAAC
CGCTGATGTTCGCTCTGCTTTTGGTCTTCAGCCGACTTCTCGCCAGATATTTCCTGTTCGACCTGCTGAACCAGTATCAC
AAGAGCGGCCCGCGCAGCCGCGTGCTGATTTACGGCGCCGGTTCGGCGGGGCGACAATTGGCACTGTCTCTCCGTCACGA
ACCTGCGATGCATCTGGCAGGGTATATCGACGACGATGACCGCTTGGCCCGCAAGCATGTCGATGGCGTAAGGGTTCATC
CGCCGACCGGTCTGGAAGACCTGATTCACGATCTCGAGATCGACACCGTCCTGCTGGCGCTGCCGCGAATAGGCCGCAAG
CAGCGTGAAATGATCGTCCGCCAGTTCGAAGGGATCAGCGTTCGAGTTCTTACCCTCCCGGCGATGGGAGATCTGATCGA
CGGCCGCGTTTCGGTAGGCGACCTGCGCGAGATCGAAATCTCGGACCTTCTGGGGCGCGACCCCGTACCGCCCAACCACC
TGCTGTTGCACAAGACTATCCAGGACAAGGTCGTCATGGTTACCGGGGCCGGCGGCTCGATCGGCAGCGAGCTCTGTCGC
CAAGTCAGCCAGCTGAAGCCTGAAGTACTTATCCTGGTGGAGATGGCCGAACACGCGCTCTACCTGATCGAAACCGAACT
GCGCGGATTGCAGGAAAGCGGTGATATCGATCCCTCGATCGCTATAGTCACCGAACTTTGCAACGTGTCCAACACCGACC
AGGTCAAGCGGATCATGCAACGCTGGCGACCGGGTACGGTTTTCCACGCTGCGGCTTACAAGCATGTGCCTCTGGTCGAG
GACAATGTCATTTCCGGGATGACAAACAATATATTCGGCACGCTGAATTGCGCGCGCGCCGCGGCGGATGCAGGCGTTGC
GCACTTCATTCTTATCAGCACGGACAAGGCCGTACGTCCGACCAATGTCATGGGTGCCAGCAAGCGGGTCTGCGAACTCA
TTCTGCAAGCTCTGGCGGCAAATGGCAGCGAGACACTTTTCGCCATCGTCCGCTTCGGCAATGTGCTCGGCTCGAGCGGG
TCGGTTGTACCGCGCTTCAAGGAGCAGATAAAAAACGGCGGGCCGATCACTCTGACCCATCGGGAGATCACGCGCTACTT
CATGACCATCCCTGAGGCCTCGCAGCTGGTGATCCAGGCTGGAGCGATGGCCGAAGGCGGCGAAGTCTATGTCCTCGATA
TGGGTGAGCCCGTGAAAATCTACGATCTTGCCAAGACGATGATCAATTTGTCCGGCCTGAGCGTAAAGGATGCGGAACAT
CCGGATGGCGATATCGAAATCATAGAGGTCGGGCTTCGCAAGGGCGAGAAGCTGTACGAAGAATTGCTTATCGGGAATTC
GCCCAAGCCAACACGGCACCAACGCATTATGCAGGCTCGAGAGGTCATGCTTCCATGGCCGGAACTCGAACCCCAACTTG
CTGAACTGCGGAAGTTGCTGTCGGGCGGAAATCGCAGCGAAGCGCTGCATATCCTGCGCGCATTGGTGCCGGAGTACACG
GCGCCGGCGACGGATTCCCATCGCGCCGCCTGA

Upstream 100 bases:

>100_bases
TGAGCCTACGGCCTGGCCGGTTGAATCCCGGCGGGTTTGGGACTACCGCGCGTAGCGTTGCCGGGTTCGACCGCCGGTGA
GGCACGAGGGGCGATAGGTG

Downstream 100 bases:

>100_bases
GTGCGGCTAAGTGACGGTGGTCGGATACGAAGCATATCGTTGCTTCAGTCAGGCGGACCTTCGGGTTTCGGCTCTGTCTG
CGGCGAACGGCGGTTCTGGT

Product: polysaccharide biosynthesis protein CapD-type

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 650; Mature: 650

Protein sequence:

>650_residues
MKSSGIRKTGEFLEKRLVRILRWAVNLNRFAKLVAVLTVDLALCVAAVIIAFSLRFGEWEFWSGAIQSVVVVAVALWLPI
FYLAGIYRTVVRFIGTRTLMGIAVSCGLMAVGLAFAFTLNSTPGIPRTVAFIQPLMFALLLVFSRLLARYFLFDLLNQYH
KSGPRSRVLIYGAGSAGRQLALSLRHEPAMHLAGYIDDDDRLARKHVDGVRVHPPTGLEDLIHDLEIDTVLLALPRIGRK
QREMIVRQFEGISVRVLTLPAMGDLIDGRVSVGDLREIEISDLLGRDPVPPNHLLLHKTIQDKVVMVTGAGGSIGSELCR
QVSQLKPEVLILVEMAEHALYLIETELRGLQESGDIDPSIAIVTELCNVSNTDQVKRIMQRWRPGTVFHAAAYKHVPLVE
DNVISGMTNNIFGTLNCARAAADAGVAHFILISTDKAVRPTNVMGASKRVCELILQALAANGSETLFAIVRFGNVLGSSG
SVVPRFKEQIKNGGPITLTHREITRYFMTIPEASQLVIQAGAMAEGGEVYVLDMGEPVKIYDLAKTMINLSGLSVKDAEH
PDGDIEIIEVGLRKGEKLYEELLIGNSPKPTRHQRIMQAREVMLPWPELEPQLAELRKLLSGGNRSEALHILRALVPEYT
APATDSHRAA

Sequences:

>Translated_650_residues
MKSSGIRKTGEFLEKRLVRILRWAVNLNRFAKLVAVLTVDLALCVAAVIIAFSLRFGEWEFWSGAIQSVVVVAVALWLPI
FYLAGIYRTVVRFIGTRTLMGIAVSCGLMAVGLAFAFTLNSTPGIPRTVAFIQPLMFALLLVFSRLLARYFLFDLLNQYH
KSGPRSRVLIYGAGSAGRQLALSLRHEPAMHLAGYIDDDDRLARKHVDGVRVHPPTGLEDLIHDLEIDTVLLALPRIGRK
QREMIVRQFEGISVRVLTLPAMGDLIDGRVSVGDLREIEISDLLGRDPVPPNHLLLHKTIQDKVVMVTGAGGSIGSELCR
QVSQLKPEVLILVEMAEHALYLIETELRGLQESGDIDPSIAIVTELCNVSNTDQVKRIMQRWRPGTVFHAAAYKHVPLVE
DNVISGMTNNIFGTLNCARAAADAGVAHFILISTDKAVRPTNVMGASKRVCELILQALAANGSETLFAIVRFGNVLGSSG
SVVPRFKEQIKNGGPITLTHREITRYFMTIPEASQLVIQAGAMAEGGEVYVLDMGEPVKIYDLAKTMINLSGLSVKDAEH
PDGDIEIIEVGLRKGEKLYEELLIGNSPKPTRHQRIMQAREVMLPWPELEPQLAELRKLLSGGNRSEALHILRALVPEYT
APATDSHRAA
>Mature_650_residues
MKSSGIRKTGEFLEKRLVRILRWAVNLNRFAKLVAVLTVDLALCVAAVIIAFSLRFGEWEFWSGAIQSVVVVAVALWLPI
FYLAGIYRTVVRFIGTRTLMGIAVSCGLMAVGLAFAFTLNSTPGIPRTVAFIQPLMFALLLVFSRLLARYFLFDLLNQYH
KSGPRSRVLIYGAGSAGRQLALSLRHEPAMHLAGYIDDDDRLARKHVDGVRVHPPTGLEDLIHDLEIDTVLLALPRIGRK
QREMIVRQFEGISVRVLTLPAMGDLIDGRVSVGDLREIEISDLLGRDPVPPNHLLLHKTIQDKVVMVTGAGGSIGSELCR
QVSQLKPEVLILVEMAEHALYLIETELRGLQESGDIDPSIAIVTELCNVSNTDQVKRIMQRWRPGTVFHAAAYKHVPLVE
DNVISGMTNNIFGTLNCARAAADAGVAHFILISTDKAVRPTNVMGASKRVCELILQALAANGSETLFAIVRFGNVLGSSG
SVVPRFKEQIKNGGPITLTHREITRYFMTIPEASQLVIQAGAMAEGGEVYVLDMGEPVKIYDLAKTMINLSGLSVKDAEH
PDGDIEIIEVGLRKGEKLYEELLIGNSPKPTRHQRIMQAREVMLPWPELEPQLAELRKLLSGGNRSEALHILRALVPEYT
APATDSHRAA

Specific function: Required for the biosynthesis of type 1 capsular polysaccharide [H]

COG id: COG1086

COG function: function code MG; Predicted nucleoside-diphosphate sugar epimerases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003869 [H]

Pfam domain/function: PF02719 Polysacc_synt_2 [H]

EC number: NA

Molecular weight: Translated: 71530; Mature: 71530

Theoretical pI: Translated: 8.16; Mature: 8.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSSGIRKTGEFLEKRLVRILRWAVNLNRFAKLVAVLTVDLALCVAAVIIAFSLRFGEWE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
FWSGAIQSVVVVAVALWLPIFYLAGIYRTVVRFIGTRTLMGIAVSCGLMAVGLAFAFTLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEC
STPGIPRTVAFIQPLMFALLLVFSRLLARYFLFDLLNQYHKSGPRSRVLIYGAGSAGRQL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHH
ALSLRHEPAMHLAGYIDDDDRLARKHVDGVRVHPPTGLEDLIHDLEIDTVLLALPRIGRK
HHHHCCCCCHHHCCCCCCHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCHH
QREMIVRQFEGISVRVLTLPAMGDLIDGRVSVGDLREIEISDLLGRDPVPPNHLLLHKTI
HHHHHHHHHCCCEEEEEEECCCCCHHCCCCCCCCCCEEEHHHHCCCCCCCCCCEEEEEEC
QDKVVMVTGAGGSIGSELCRQVSQLKPEVLILVEMAEHALYLIETELRGLQESGDIDPSI
CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHCCHHCCCCCCHH
AIVTELCNVSNTDQVKRIMQRWRPGTVFHAAAYKHVPLVEDNVISGMTNNIFGTLNCARA
HHHHHHHCCCCHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCHHHHCHHHCHHCCHHHHHH
AADAGVAHFILISTDKAVRPTNVMGASKRVCELILQALAANGSETLFAIVRFGNVLGSSG
HHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
SVVPRFKEQIKNGGPITLTHREITRYFMTIPEASQLVIQAGAMAEGGEVYVLDMGEPVKI
CCCHHHHHHHCCCCCEEEEHHHHHHHHHCCCCHHHHHHEECCCCCCCEEEEEECCCCCHH
YDLAKTMINLSGLSVKDAEHPDGDIEIIEVGLRKGEKLYEELLIGNSPKPTRHQRIMQAR
HHHHHHHHHHCCCCCCCCCCCCCCEEEEEEHHHCHHHHHHHHHCCCCCCCHHHHHHHHHH
EVMLPWPELEPQLAELRKLLSGGNRSEALHILRALVPEYTAPATDSHRAA
HHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MKSSGIRKTGEFLEKRLVRILRWAVNLNRFAKLVAVLTVDLALCVAAVIIAFSLRFGEWE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
FWSGAIQSVVVVAVALWLPIFYLAGIYRTVVRFIGTRTLMGIAVSCGLMAVGLAFAFTLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEC
STPGIPRTVAFIQPLMFALLLVFSRLLARYFLFDLLNQYHKSGPRSRVLIYGAGSAGRQL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHH
ALSLRHEPAMHLAGYIDDDDRLARKHVDGVRVHPPTGLEDLIHDLEIDTVLLALPRIGRK
HHHHCCCCCHHHCCCCCCHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCHH
QREMIVRQFEGISVRVLTLPAMGDLIDGRVSVGDLREIEISDLLGRDPVPPNHLLLHKTI
HHHHHHHHHCCCEEEEEEECCCCCHHCCCCCCCCCCEEEHHHHCCCCCCCCCCEEEEEEC
QDKVVMVTGAGGSIGSELCRQVSQLKPEVLILVEMAEHALYLIETELRGLQESGDIDPSI
CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHCCHHCCCCCCHH
AIVTELCNVSNTDQVKRIMQRWRPGTVFHAAAYKHVPLVEDNVISGMTNNIFGTLNCARA
HHHHHHHCCCCHHHHHHHHHHCCCCCEEEHHHHCCCCCCCCHHHHCHHHCHHCCHHHHHH
AADAGVAHFILISTDKAVRPTNVMGASKRVCELILQALAANGSETLFAIVRFGNVLGSSG
HHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
SVVPRFKEQIKNGGPITLTHREITRYFMTIPEASQLVIQAGAMAEGGEVYVLDMGEPVKI
CCCHHHHHHHCCCCCEEEEHHHHHHHHHCCCCHHHHHHEECCCCCCCEEEEEECCCCCHH
YDLAKTMINLSGLSVKDAEHPDGDIEIIEVGLRKGEKLYEELLIGNSPKPTRHQRIMQAR
HHHHHHHHHHCCCCCCCCCCCCCCEEEEEEHHHCHHHHHHHHHCCCCCCCHHHHHHHHHH
EVMLPWPELEPQLAELRKLLSGGNRSEALHILRALVPEYTAPATDSHRAA
HHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7961465 [H]