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The map label for this gene is ydeB [H]

Identifier: 85375450

GI number: 85375450

Start: 2640347

End: 2640883

Strand: Reverse

Name: ydeB [H]

Synonym: ELI_13115

Alternate gene names: 85375450

Gene position: 2640883-2640347 (Counterclockwise)

Preceding gene: 85375451

Following gene: 85375449

Centisome position: 86.52

GC content: 60.52

Gene sequence:

>537_bases
ATGGCAGCCAAGGCCCTCGCCTTCGACGTAGGCGATTATGTTGTTTACCCCAAGCACGGCGTCGGTCGCGTGATCGAGCT
TCAGAACGAGGAAATCGCCGGCATGCAGCTCGAGCTTTACGTGCTGCGCTTCGAGAAGGAGCGCATGACGCTCCGCGTGC
CCACCAACAAGGTCGAATCGATCGGCATGCGCAAGCTGTCGAGCGACAAGACGCTGAAGGAAGCGATGGAAACGCTCAAG
GGCAAGCCCAAGGTCAAGCGGACCATGTGGAGCCGCCGCGCGCAGGAATACGAAGCCAAGATCAATTCGGGCGAAATCGT
GCTGATCGCCGAAGTGACGCGCGACCTCTTCCGCCCGGACGACCAGCCCGAGCAGAGCTATTCCGAACGCCAGATCTTCG
AAGCCGCATCGAGCCGCCTCGCTCGCGAACTCGCGGCGATGGAAAAGACCGACGAAGCGACCGCGCTCGAGAAAATCCTC
GACGTTCTGCGCGAGCATGCGCCGCAATATTACAACAACGAGGAAGAGGACGCCTGA

Upstream 100 bases:

>100_bases
GAATTTTCGACAAGTTGAGGCCCATGCCGGCGCGCCTCGCGCGGCCGATTACGGGGCGACTGTCGGAAACACGCCTGTCT
TTTGAAAGGAAGGATACTTC

Downstream 100 bases:

>100_bases
TCGAAAGGCGACAATCCGACTTCGATGAGGGTCGCTACCGCAAGGAGCGGCCCTTTTTCGTGGGTTGAAGATATGCCCGC
AGTGTATTACGTCGGCAATA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 177

Protein sequence:

>178_residues
MAAKALAFDVGDYVVYPKHGVGRVIELQNEEIAGMQLELYVLRFEKERMTLRVPTNKVESIGMRKLSSDKTLKEAMETLK
GKPKVKRTMWSRRAQEYEAKINSGEIVLIAEVTRDLFRPDDQPEQSYSERQIFEAASSRLARELAAMEKTDEATALEKIL
DVLREHAPQYYNNEEEDA

Sequences:

>Translated_178_residues
MAAKALAFDVGDYVVYPKHGVGRVIELQNEEIAGMQLELYVLRFEKERMTLRVPTNKVESIGMRKLSSDKTLKEAMETLK
GKPKVKRTMWSRRAQEYEAKINSGEIVLIAEVTRDLFRPDDQPEQSYSERQIFEAASSRLARELAAMEKTDEATALEKIL
DVLREHAPQYYNNEEEDA
>Mature_177_residues
AAKALAFDVGDYVVYPKHGVGRVIELQNEEIAGMQLELYVLRFEKERMTLRVPTNKVESIGMRKLSSDKTLKEAMETLKG
KPKVKRTMWSRRAQEYEAKINSGEIVLIAEVTRDLFRPDDQPEQSYSERQIFEAASSRLARELAAMEKTDEATALEKILD
VLREHAPQYYNNEEEDA

Specific function: Unknown

COG id: COG1329

COG function: function code K; Transcriptional regulators, similar to M. xanthus CarD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003711 [H]

Pfam domain/function: PF02559 CarD_TRCF [H]

EC number: NA

Molecular weight: Translated: 20471; Mature: 20339

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAKALAFDVGDYVVYPKHGVGRVIELQNEEIAGMQLELYVLRFEKERMTLRVPTNKVES
CCCCHHEEECCCEEEECCCCCCCEEEECCCCCCCEEEEEEEEEEECCCEEEECCCHHHHH
IGMRKLSSDKTLKEAMETLKGKPKVKRTMWSRRAQEYEAKINSGEIVLIAEVTRDLFRPD
HHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHCCC
DQPEQSYSERQIFEAASSRLARELAAMEKTDEATALEKILDVLREHAPQYYNNEEEDA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHCCCCCCCC
>Mature Secondary Structure 
AAKALAFDVGDYVVYPKHGVGRVIELQNEEIAGMQLELYVLRFEKERMTLRVPTNKVES
CCCHHEEECCCEEEECCCCCCCEEEECCCCCCCEEEEEEEEEEECCCEEEECCCHHHHH
IGMRKLSSDKTLKEAMETLKGKPKVKRTMWSRRAQEYEAKINSGEIVLIAEVTRDLFRPD
HHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHCCC
DQPEQSYSERQIFEAASSRLARELAAMEKTDEATALEKILDVLREHAPQYYNNEEEDA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]