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The map label for this gene is yfiA [C]

Identifier: 85375422

GI number: 85375422

Start: 2613852

End: 2614424

Strand: Reverse

Name: yfiA [C]

Synonym: ELI_12975

Alternate gene names: 85375422

Gene position: 2614424-2613852 (Counterclockwise)

Preceding gene: 85375423

Following gene: 85375421

Centisome position: 85.65

GC content: 61.08

Gene sequence:

>573_bases
ATGGATATTCGCGTTTCAGGCCACCAGATCGAAACCGGCAGCGCGCTGCAGGACCACGCCTCCGACCGGTTGAATGCCAT
CGTCGAAAAGTATTTCAGCCGGGCGATTTCTTCACACGTTACGTTCGGCAAGGCGCCTGCCGGGGCTTTTGCCTGCGACA
TCGTGACCCATGTCATGCAGGGGCTCGTGCTCAAGGCCCATGGCGAGGCGCATGACGCGCACCAGGCGCTCGACCAGGCG
GCGGAAAAGCTCGACAAGCAATTGCGGCGCTACAAGCGCCGGCTGCAAGACCGGCACGAACAGGCCGCCCATGCGCTCAA
GGAAGAGGAAGCGGCCTATACGATCTTCGCGGCATCCGATTCCGACGAGATCGAGGACGAGGACGGCGGCGAGGCCCCGC
TGGTCGTGGCGGAAACGAAAACCGATATTCCCGAGGCTTCCGTAGCGGATGCGGTCATGATGCTGGACTTGCGTGACACA
AACGCGATGTTCTTCAAAAACGCTGGAACGGGCCGACATAATATGGTCTATCGCCGCCGTGACGGATCGATCGGCTGGGT
CGAACCGCACTGA

Upstream 100 bases:

>100_bases
CAAAGTGTTCCTCGAAGGGATCGAGTCCCCGCTCTGGAACAATTGATACAGCCGTCGCTCGTGTGAGCAATGCCCCCAAG
ACAACAGGAGAGTGTCGCCG

Downstream 100 bases:

>100_bases
GAGGGACCACATCGGTATCGAGCAGCGCCTGATCGCGGGCGTTCGTCGCTTGTCTGTCCGCGCGGTCCGAAACCTGTCGA
GTGCTGGAAATACCCCCGAG

Product: ribosome-associated protein Y

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MDIRVSGHQIETGSALQDHASDRLNAIVEKYFSRAISSHVTFGKAPAGAFACDIVTHVMQGLVLKAHGEAHDAHQALDQA
AEKLDKQLRRYKRRLQDRHEQAAHALKEEEAAYTIFAASDSDEIEDEDGGEAPLVVAETKTDIPEASVADAVMMLDLRDT
NAMFFKNAGTGRHNMVYRRRDGSIGWVEPH

Sequences:

>Translated_190_residues
MDIRVSGHQIETGSALQDHASDRLNAIVEKYFSRAISSHVTFGKAPAGAFACDIVTHVMQGLVLKAHGEAHDAHQALDQA
AEKLDKQLRRYKRRLQDRHEQAAHALKEEEAAYTIFAASDSDEIEDEDGGEAPLVVAETKTDIPEASVADAVMMLDLRDT
NAMFFKNAGTGRHNMVYRRRDGSIGWVEPH
>Mature_190_residues
MDIRVSGHQIETGSALQDHASDRLNAIVEKYFSRAISSHVTFGKAPAGAFACDIVTHVMQGLVLKAHGEAHDAHQALDQA
AEKLDKQLRRYKRRLQDRHEQAAHALKEEEAAYTIFAASDSDEIEDEDGGEAPLVVAETKTDIPEASVADAVMMLDLRDT
NAMFFKNAGTGRHNMVYRRRDGSIGWVEPH

Specific function: Probably modulates the activity of sigma(54) (rpoN) [H]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma(54) modulation protein family [H]

Homologues:

None

Paralogues:

None

Copy number: 600 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 21007; Mature: 21007

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIRVSGHQIETGSALQDHASDRLNAIVEKYFSRAISSHVTFGKAPAGAFACDIVTHVMQ
CCEECCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
GLVLKAHGEAHDAHQALDQAAEKLDKQLRRYKRRLQDRHEQAAHALKEEEAAYTIFAASD
HHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCC
SDEIEDEDGGEAPLVVAETKTDIPEASVADAVMMLDLRDTNAMFFKNAGTGRHNMVYRRR
CCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHEEEECCCCEEEEECCCCCCCCEEEEEC
DGSIGWVEPH
CCCCCCCCCC
>Mature Secondary Structure
MDIRVSGHQIETGSALQDHASDRLNAIVEKYFSRAISSHVTFGKAPAGAFACDIVTHVMQ
CCEECCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
GLVLKAHGEAHDAHQALDQAAEKLDKQLRRYKRRLQDRHEQAAHALKEEEAAYTIFAASD
HHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCC
SDEIEDEDGGEAPLVVAETKTDIPEASVADAVMMLDLRDTNAMFFKNAGTGRHNMVYRRR
CCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHEEEECCCCEEEEECCCCCCCCEEEEEC
DGSIGWVEPH
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430; 3034856 [H]