Click here to switch to the map view.

The map label for this gene is 85375349

Identifier: 85375349

GI number: 85375349

Start: 2551288

End: 2552010

Strand: Direct

Name: 85375349

Synonym: ELI_12610

Alternate gene names: NA

Gene position: 2551288-2552010 (Clockwise)

Preceding gene: 85375348

Following gene: 85375350

Centisome position: 83.58

GC content: 60.86

Gene sequence:

>723_bases
ATGGGTTTCGCGATCGCCTTCTCGATACTGGCCATGATCGGCATCGTCGCTGCGCGCTATCTCGCGGCGAGCGGTATCTT
CGCGTGGCTGACCGCCAAAGTGCGGCCAGGGTTCTATACCGGCCTCGACATGCAAATGCGCCGCGAGATCGGCTGGTCGC
TGGCCGCGGCGACCATCTACGGTGTGCCTGCAGGCGTGGTGGCCTGGGGGTGGGACACCCTCGGCTGGACGCTGATCTAC
AGCGAGTGGAATGCCTATCCGTTATGGTACTTGCCGCTGTCGGTGCTGGTCTATCTGTTTGCCCACGACACCTGGTTTTA
CTGGACCCACCGCTGGATGCACCGGCCGCGCGCGTTCAGGCTCGCCCATGCCGTGCATCACGCCAGCCGCCCGCCGACAG
CCTGGGCCGCGATGAGCTTTCACCCTGTCGAGGCCATCATTGGCGCGGTGATTATCCCGCTCCTCGTCTTCATAATCCCG
ATCCATGTCGCTATGCTGGCCGCAGTTTTAACGGTGATGACGGTCATGGGGGTCACCAATCACATGGGCTGGGAGATATT
CCCGCGCAGGCTCGTTCATTCCCGCTTAGGGAACTGGCTGATAACCGCCAGTCATCACCAGCTTCATCACGAACGCTATT
CCTGCAATTACGGACTCTATTTCAGGTTTTGGGATCGCCTATGCAGAACCGACAAGGGGTTGGCCGACGCCTACCGGCCT
TAG

Upstream 100 bases:

>100_bases
ATGCGGCGCATGACCGTGGGGGCCGACCCGGATTGCGAGCCGTGGGGACAGCGCGAATAGGCCCTGTGCAACCTTTGCGG
CTCGCGGCATAAGCACGGCC

Downstream 100 bases:

>100_bases
CCATCGCCATGCTCTTGCCGTTGCTTGCGGCGAATGCGCCGGTCGCGCGGCATGATGTCACAGTAACCGTCACCGACCTG
CGATCGGGCGACGGGAAGGT

Product: sterol desaturase family protein

Products: NA

Alternate protein names: Sterol Desaturase Family Protein; Sterol Desaturase; C-5 Sterol Desaturase; Desaturase; Sterol Desaturase Superfamily; Fatty Acid Hydroxylase Superfamily

Number of amino acids: Translated: 240; Mature: 239

Protein sequence:

>240_residues
MGFAIAFSILAMIGIVAARYLAASGIFAWLTAKVRPGFYTGLDMQMRREIGWSLAAATIYGVPAGVVAWGWDTLGWTLIY
SEWNAYPLWYLPLSVLVYLFAHDTWFYWTHRWMHRPRAFRLAHAVHHASRPPTAWAAMSFHPVEAIIGAVIIPLLVFIIP
IHVAMLAAVLTVMTVMGVTNHMGWEIFPRRLVHSRLGNWLITASHHQLHHERYSCNYGLYFRFWDRLCRTDKGLADAYRP

Sequences:

>Translated_240_residues
MGFAIAFSILAMIGIVAARYLAASGIFAWLTAKVRPGFYTGLDMQMRREIGWSLAAATIYGVPAGVVAWGWDTLGWTLIY
SEWNAYPLWYLPLSVLVYLFAHDTWFYWTHRWMHRPRAFRLAHAVHHASRPPTAWAAMSFHPVEAIIGAVIIPLLVFIIP
IHVAMLAAVLTVMTVMGVTNHMGWEIFPRRLVHSRLGNWLITASHHQLHHERYSCNYGLYFRFWDRLCRTDKGLADAYRP
>Mature_239_residues
GFAIAFSILAMIGIVAARYLAASGIFAWLTAKVRPGFYTGLDMQMRREIGWSLAAATIYGVPAGVVAWGWDTLGWTLIYS
EWNAYPLWYLPLSVLVYLFAHDTWFYWTHRWMHRPRAFRLAHAVHHASRPPTAWAAMSFHPVEAIIGAVIIPLLVFIIPI
HVAMLAAVLTVMTVMGVTNHMGWEIFPRRLVHSRLGNWLITASHHQLHHERYSCNYGLYFRFWDRLCRTDKGLADAYRP

Specific function: Unknown

COG id: COG3000

COG function: function code I; Sterol desaturase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI68160945, Length=194, Percent_Identity=26.2886597938144, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI68160941, Length=194, Percent_Identity=26.2886597938144, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI5803157, Length=153, Percent_Identity=30.0653594771242, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI62865628, Length=148, Percent_Identity=30.4054054054054, Blast_Score=67, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6321497, Length=148, Percent_Identity=29.7297297297297, Blast_Score=67, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6323085, Length=202, Percent_Identity=26.2376237623762, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27540; Mature: 27408

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFAIAFSILAMIGIVAARYLAASGIFAWLTAKVRPGFYTGLDMQMRREIGWSLAAATIY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHCHHHHHHHHH
GVPAGVVAWGWDTLGWTLIYSEWNAYPLWYLPLSVLVYLFAHDTWFYWTHRWMHRPRAFR
CCCCCHHHCCHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHH
LAHAVHHASRPPTAWAAMSFHPVEAIIGAVIIPLLVFIIPIHVAMLAAVLTVMTVMGVTN
HHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HMGWEIFPRRLVHSRLGNWLITASHHQLHHERYSCNYGLYFRFWDRLCRTDKGLADAYRP
CCCHHHHHHHHHHHHHCCEEEEECHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
GFAIAFSILAMIGIVAARYLAASGIFAWLTAKVRPGFYTGLDMQMRREIGWSLAAATIY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHCHHHHHHHHH
GVPAGVVAWGWDTLGWTLIYSEWNAYPLWYLPLSVLVYLFAHDTWFYWTHRWMHRPRAFR
CCCCCHHHCCHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHH
LAHAVHHASRPPTAWAAMSFHPVEAIIGAVIIPLLVFIIPIHVAMLAAVLTVMTVMGVTN
HHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HMGWEIFPRRLVHSRLGNWLITASHHQLHHERYSCNYGLYFRFWDRLCRTDKGLADAYRP
CCCHHHHHHHHHHHHHCCEEEEECHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA