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The map label for this gene is psd [H]

Identifier: 85375224

GI number: 85375224

Start: 2418064

End: 2418915

Strand: Reverse

Name: psd [H]

Synonym: ELI_11985

Alternate gene names: 85375224

Gene position: 2418915-2418064 (Counterclockwise)

Preceding gene: 85375225

Following gene: 85375220

Centisome position: 79.25

GC content: 65.38

Gene sequence:

>852_bases
ATGAGCAAACCCTTCGTATGGCTCCAGCATGCATTGCCGCAGCATGCCCTGTCGCGCCTCGCAGGTCGCTTCGCGGGCAG
CCGTCGCCCGTGGCTGCGAGACCGGATGATCGCGCGATTCGCCGCGACCTATGGCATCGACATGAGCGAAGCCGAACGTC
CGCTCGGCAGCTACGATAGCTTCAACGACTTCTTCACGCGCTCGCTGAAACCCGGTGCGCGTCCGCTGGCCGATGCCTCG
CAATACGTCCTGTCGCCCGCCGATGGCGCGGTCAGCCAGCTCGGTCGCATCGAGGAAGGGCGCATCTTTCAGGCCAAAGG
GCACAGCTTCACGGCAACAGAACTTCTCGGCGGGGACGAGCAGACTGCGGCGCGCTTCACCGACGGGCATTTCGCCACGA
TCTATCTCAGCCCGCGCGACTATCACTGGGTCCACATGCCGGTTTCGGGTACGCTGCTGGAAACGACCTACGTTCCGGGT
GAGCTGTTCTCGGTCAATGCCGTGACCGCCGAAGGCGTGCCGCGGCTGTTTGCCCGCAACGAGCGGCTGGCCTGCCTGTT
CGACAGCGACCTCGGACAGGTCGCCAGCGTGATGGTCGGCGCAATGATCGTTGCCGGTATCGAGACCGTGTGGGGCGGAC
GGGTCGAACCGCACGGCAGAAAGCTCACGCGGTCGGTTTATTCTCGGGAAGGCGCGGCCCCGCACCGCTACGAGGCCGGC
GAGGAGATGGGCCGCTTCCTGCTGGGATCCACAGTGGTCCTGCTGTTCGAGGAAAACCGGATCGAATTCTGCGAGGGCCT
GCAGGCAGGCAGCGCCGTGCGGATGGGCCAGGCGCTGGCCCACAAGCTCTAG

Upstream 100 bases:

>100_bases
CGCTAAGGCGGAACGCGGCACGCCCCTCGCCCGTTGAGGGCTGGAATGGAGTGCGCACCATAATCTTGATCCAAATCCGC
CGCGAGGGCATCGCACCTCT

Downstream 100 bases:

>100_bases
CCGTCGAAGGCCGGGGCGAGGGTCAGCTTGCCGCTCGGCTTCTCTCCTTCGAACACCAGGATCTGCAGGAAGGGATCGAG
TTCGTCCGACAACGACAGGT

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MSKPFVWLQHALPQHALSRLAGRFAGSRRPWLRDRMIARFAATYGIDMSEAERPLGSYDSFNDFFTRSLKPGARPLADAS
QYVLSPADGAVSQLGRIEEGRIFQAKGHSFTATELLGGDEQTAARFTDGHFATIYLSPRDYHWVHMPVSGTLLETTYVPG
ELFSVNAVTAEGVPRLFARNERLACLFDSDLGQVASVMVGAMIVAGIETVWGGRVEPHGRKLTRSVYSREGAAPHRYEAG
EEMGRFLLGSTVVLLFEENRIEFCEGLQAGSAVRMGQALAHKL

Sequences:

>Translated_283_residues
MSKPFVWLQHALPQHALSRLAGRFAGSRRPWLRDRMIARFAATYGIDMSEAERPLGSYDSFNDFFTRSLKPGARPLADAS
QYVLSPADGAVSQLGRIEEGRIFQAKGHSFTATELLGGDEQTAARFTDGHFATIYLSPRDYHWVHMPVSGTLLETTYVPG
ELFSVNAVTAEGVPRLFARNERLACLFDSDLGQVASVMVGAMIVAGIETVWGGRVEPHGRKLTRSVYSREGAAPHRYEAG
EEMGRFLLGSTVVLLFEENRIEFCEGLQAGSAVRMGQALAHKL
>Mature_282_residues
SKPFVWLQHALPQHALSRLAGRFAGSRRPWLRDRMIARFAATYGIDMSEAERPLGSYDSFNDFFTRSLKPGARPLADASQ
YVLSPADGAVSQLGRIEEGRIFQAKGHSFTATELLGGDEQTAARFTDGHFATIYLSPRDYHWVHMPVSGTLLETTYVPGE
LFSVNAVTAEGVPRLFARNERLACLFDSDLGQVASVMVGAMIVAGIETVWGGRVEPHGRKLTRSVYSREGAAPHRYEAGE
EMGRFLLGSTVVLLFEENRIEFCEGLQAGSAVRMGQALAHKL

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI13489112, Length=304, Percent_Identity=30.5921052631579, Blast_Score=127, Evalue=1e-29,
Organism=Escherichia coli, GI1790604, Length=276, Percent_Identity=47.1014492753623, Blast_Score=258, Evalue=4e-70,
Organism=Caenorhabditis elegans, GI71980843, Length=280, Percent_Identity=32.8571428571429, Blast_Score=135, Evalue=3e-32,
Organism=Caenorhabditis elegans, GI71980840, Length=280, Percent_Identity=32.8571428571429, Blast_Score=134, Evalue=4e-32,
Organism=Saccharomyces cerevisiae, GI6321609, Length=258, Percent_Identity=26.7441860465116, Blast_Score=95, Evalue=1e-20,
Organism=Saccharomyces cerevisiae, GI6324160, Length=167, Percent_Identity=38.9221556886228, Blast_Score=82, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24649526, Length=303, Percent_Identity=31.3531353135314, Blast_Score=117, Evalue=7e-27,
Organism=Drosophila melanogaster, GI24649528, Length=303, Percent_Identity=31.3531353135314, Blast_Score=117, Evalue=7e-27,
Organism=Drosophila melanogaster, GI24649524, Length=303, Percent_Identity=31.3531353135314, Blast_Score=117, Evalue=7e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR005221 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 31166; Mature: 31035

Theoretical pI: Translated: 7.32; Mature: 7.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKPFVWLQHALPQHALSRLAGRFAGSRRPWLRDRMIARFAATYGIDMSEAERPLGSYDS
CCCCEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCC
FNDFFTRSLKPGARPLADASQYVLSPADGAVSQLGRIEEGRIFQAKGHSFTATELLGGDE
HHHHHHHCCCCCCCCHHHHHHHEECCCCHHHHHHCCCCCCCEEEECCCCEEHHHHCCCCC
QTAARFTDGHFATIYLSPRDYHWVHMPVSGTLLETTYVPGELFSVNAVTAEGVPRLFARN
HHHHEECCCCEEEEEECCCCCEEEEECCCCEEEEEEECCCCEEEEEEECCCCCHHHHHCC
ERLACLFDSDLGQVASVMVGAMIVAGIETVWGGRVEPHGRKLTRSVYSREGAAPHRYEAG
CCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCH
EEMGRFLLGSTVVLLFEENRIEFCEGLQAGSAVRMGQALAHKL
HHHHHHHHCCEEEEEEECCCHHHHHCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
SKPFVWLQHALPQHALSRLAGRFAGSRRPWLRDRMIARFAATYGIDMSEAERPLGSYDS
CCCEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCC
FNDFFTRSLKPGARPLADASQYVLSPADGAVSQLGRIEEGRIFQAKGHSFTATELLGGDE
HHHHHHHCCCCCCCCHHHHHHHEECCCCHHHHHHCCCCCCCEEEECCCCEEHHHHCCCCC
QTAARFTDGHFATIYLSPRDYHWVHMPVSGTLLETTYVPGELFSVNAVTAEGVPRLFARN
HHHHEECCCCEEEEEECCCCCEEEEECCCCEEEEEEECCCCEEEEEEECCCCCHHHHHCC
ERLACLFDSDLGQVASVMVGAMIVAGIETVWGGRVEPHGRKLTRSVYSREGAAPHRYEAG
CCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCH
EEMGRFLLGSTVVLLFEENRIEFCEGLQAGSAVRMGQALAHKL
HHHHHHHHCCEEEEEEECCCHHHHHCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA