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The map label for this gene is ydaM [H]

Identifier: 85374409

GI number: 85374409

Start: 1637487

End: 1638638

Strand: Direct

Name: ydaM [H]

Synonym: ELI_07910

Alternate gene names: 85374409

Gene position: 1637487-1638638 (Clockwise)

Preceding gene: 85374408

Following gene: 85374412

Centisome position: 53.65

GC content: 67.53

Gene sequence:

>1152_bases
ATGCGGATGGCCGCTCTCTTGCGAAGCCCGCAATCGCTTGCCGTCCGGACCGAGGTCATGCGCGCGATGGTGGAGCGCGA
GGATCGCGTCGCCCCGGCCAACGTCGTTTCGCTGTGTCTCTTTGGCTTCGCTCTGTTTCTGGTCGCGCAACCTGCTCTGC
TCGGTGTGGCGCTGTTGCTGCGGATCGCTTCCCTGGTCTTCGTGCGCGGCTCGACCCGCAGGCTCGCCGCTTCGCTGGAA
GCGGGGCTCCCTTCGCGATGGGGGCTGACCCGGCTTACGCTGGCGCTGGTGACGGCGGGGGCGACCTGGGCCGGCCTGAT
GGTATCGCTCGATCCGGTGGCCGATCCGCCGATGGCGGTGGTCGCGGTCAGCGGGATGACGCTTGTCGCCATCTCGCTGG
TGATCGTTACCTACGGCCCGATCAGGCGCGGCATGACGGCGCTGGTGGGGGCCTTCTGCGCCACGATTTTCGTAGCCAAG
GCCCTCGATCCCGCACCGCTGCCGCTGTGGACCGCGCCGATCATCGCGCTGATCCTGGTCGGCTCGGTCCTGTTCAGCCG
CGGCATGGTGCGCCACTCGATCGACGCGGCGCAGATGACGGTTGAGAACCGCGCGCTGACCGCTACGCTGCAAGGGGCGC
TGCAAGAGGCCGAGCACAATGCGCGGCACGATGCGCTGACCGGGTTGCTCAACCGCCGCGCATTCTTCGGCGATTATGCC
GATCCCCCCGCAGCGGGCCGCGACCGGTTCCTGCTGATGATCGATCTCGACCATTTCAAACGGATCAATGATAATTTCGG
GCACGATACCGGCGATATCGTGCTGCGCGCCATGGCAGAGCAAATGCAAGCGGTGGCTGCTGATTTCCCCGAGGACACCG
CAGGCTGTGTGCGGCTGGGCGGCGAGGAATTCATCCTCGTCATCGACGGCATCGACGAGCGGCATGCCGCTTTGGCGGCG
GAAAACCTGCGCCTGCGCGCGCGGCGCATCGTGACAGCGCAGAAGCTCGACCCGCAGCTGCGCGTCTCGGCCTCGATCGG
CCTCGCCCGCCAGCGAGAGCACGAAAGCCTCGACGACGTGCTCCAGCGCTCCGACCTCGCACTCTACCGCGCCAAGGACC
GCGGCCGCGACCAGGTGGCGCTGGCGGCCTGA

Upstream 100 bases:

>100_bases
GCGTGACTCCAATGGCGTATCGTGCGCCGATGGAGACTGACCCGCGATGTCGCGTGAGGACACTTACAGTCTGCGCCAAA
CCGCTTCCGGCTCGACTGGA

Downstream 100 bases:

>100_bases
GGTCCGAATGGTCAAAGCAAAAGCAGTCGACGCTCAGGGGTGTCCCGGCGGGACCGTTCCTACCCCATCGCCACCAAAAC
CCGCATCACGGACGTCTCGC

Product: response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MRMAALLRSPQSLAVRTEVMRAMVEREDRVAPANVVSLCLFGFALFLVAQPALLGVALLLRIASLVFVRGSTRRLAASLE
AGLPSRWGLTRLTLALVTAGATWAGLMVSLDPVADPPMAVVAVSGMTLVAISLVIVTYGPIRRGMTALVGAFCATIFVAK
ALDPAPLPLWTAPIIALILVGSVLFSRGMVRHSIDAAQMTVENRALTATLQGALQEAEHNARHDALTGLLNRRAFFGDYA
DPPAAGRDRFLLMIDLDHFKRINDNFGHDTGDIVLRAMAEQMQAVAADFPEDTAGCVRLGGEEFILVIDGIDERHAALAA
ENLRLRARRIVTAQKLDPQLRVSASIGLARQREHESLDDVLQRSDLALYRAKDRGRDQVALAA

Sequences:

>Translated_383_residues
MRMAALLRSPQSLAVRTEVMRAMVEREDRVAPANVVSLCLFGFALFLVAQPALLGVALLLRIASLVFVRGSTRRLAASLE
AGLPSRWGLTRLTLALVTAGATWAGLMVSLDPVADPPMAVVAVSGMTLVAISLVIVTYGPIRRGMTALVGAFCATIFVAK
ALDPAPLPLWTAPIIALILVGSVLFSRGMVRHSIDAAQMTVENRALTATLQGALQEAEHNARHDALTGLLNRRAFFGDYA
DPPAAGRDRFLLMIDLDHFKRINDNFGHDTGDIVLRAMAEQMQAVAADFPEDTAGCVRLGGEEFILVIDGIDERHAALAA
ENLRLRARRIVTAQKLDPQLRVSASIGLARQREHESLDDVLQRSDLALYRAKDRGRDQVALAA
>Mature_383_residues
MRMAALLRSPQSLAVRTEVMRAMVEREDRVAPANVVSLCLFGFALFLVAQPALLGVALLLRIASLVFVRGSTRRLAASLE
AGLPSRWGLTRLTLALVTAGATWAGLMVSLDPVADPPMAVVAVSGMTLVAISLVIVTYGPIRRGMTALVGAFCATIFVAK
ALDPAPLPLWTAPIIALILVGSVLFSRGMVRHSIDAAQMTVENRALTATLQGALQEAEHNARHDALTGLLNRRAFFGDYA
DPPAAGRDRFLLMIDLDHFKRINDNFGHDTGDIVLRAMAEQMQAVAADFPEDTAGCVRLGGEEFILVIDGIDERHAALAA
ENLRLRARRIVTAQKLDPQLRVSASIGLARQREHESLDDVLQRSDLALYRAKDRGRDQVALAA

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=179, Percent_Identity=39.6648044692737, Blast_Score=104, Evalue=9e-24,
Organism=Escherichia coli, GI1786584, Length=188, Percent_Identity=34.0425531914894, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1787262, Length=246, Percent_Identity=27.2357723577236, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI145693134, Length=169, Percent_Identity=34.9112426035503, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI1787802, Length=179, Percent_Identity=29.608938547486, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI87082007, Length=177, Percent_Identity=38.4180790960452, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787816, Length=161, Percent_Identity=31.055900621118, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787056, Length=229, Percent_Identity=27.9475982532751, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788085, Length=172, Percent_Identity=29.0697674418605, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788381, Length=180, Percent_Identity=31.1111111111111, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788956, Length=157, Percent_Identity=31.8471337579618, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI87081977, Length=168, Percent_Identity=30.3571428571429, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI87081974, Length=155, Percent_Identity=30.3225806451613, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1787541, Length=170, Percent_Identity=32.3529411764706, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 41351; Mature: 41351

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRMAALLRSPQSLAVRTEVMRAMVEREDRVAPANVVSLCLFGFALFLVAQPALLGVALLL
CCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RIASLVFVRGSTRRLAASLEAGLPSRWGLTRLTLALVTAGATWAGLMVSLDPVADPPMAV
HHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHEEEECCCCCCCCEE
VAVSGMTLVAISLVIVTYGPIRRGMTALVGAFCATIFVAKALDPAPLPLWTAPIIALILV
EEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
GSVLFSRGMVRHSIDAAQMTVENRALTATLQGALQEAEHNARHDALTGLLNRRAFFGDYA
HHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DPPAAGRDRFLLMIDLDHFKRINDNFGHDTGDIVLRAMAEQMQAVAADFPEDTAGCVRLG
CCCCCCCCCEEEEEEHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHEEC
GEEFILVIDGIDERHAALAAENLRLRARRIVTAQKLDPQLRVSASIGLARQREHESLDDV
CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHCHHHHHHHHHHHHH
LQRSDLALYRAKDRGRDQVALAA
HHHCCHHEEECCCCCCCCEEECC
>Mature Secondary Structure
MRMAALLRSPQSLAVRTEVMRAMVEREDRVAPANVVSLCLFGFALFLVAQPALLGVALLL
CCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RIASLVFVRGSTRRLAASLEAGLPSRWGLTRLTLALVTAGATWAGLMVSLDPVADPPMAV
HHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHEEEECCCCCCCCEE
VAVSGMTLVAISLVIVTYGPIRRGMTALVGAFCATIFVAKALDPAPLPLWTAPIIALILV
EEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
GSVLFSRGMVRHSIDAAQMTVENRALTATLQGALQEAEHNARHDALTGLLNRRAFFGDYA
HHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DPPAAGRDRFLLMIDLDHFKRINDNFGHDTGDIVLRAMAEQMQAVAADFPEDTAGCVRLG
CCCCCCCCCEEEEEEHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHEEC
GEEFILVIDGIDERHAALAAENLRLRARRIVTAQKLDPQLRVSASIGLARQREHESLDDV
CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHCHHHHHHHHHHHHH
LQRSDLALYRAKDRGRDQVALAA
HHHCCHHEEECCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]