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The map label for this gene is rimM

Identifier: 85374321

GI number: 85374321

Start: 1548824

End: 1549333

Strand: Reverse

Name: rimM

Synonym: ELI_07470

Alternate gene names: 85374321

Gene position: 1549333-1548824 (Counterclockwise)

Preceding gene: 85374322

Following gene: 85374320

Centisome position: 50.76

GC content: 63.73

Gene sequence:

>510_bases
GTGACCGATAACACGCCCCTCACGCTGGCCGCCATTACCGGCGCGCATGGCGTGAGGGGCGACGTGCGTCTGAAGCTGCT
GGGCGAGGGGCTGGAGGCGCTCAAGGCGCATTCGAGCTTCAACGAGGGCACCCTGACCCTCAAAAGCGTCCGTAGCGACA
ACAAGGGCGGCGCGATCGCCCGCTTCGCCGAGGTGCAGGGCCGCGAGCAGGCCGAAAAACTGCGCGGTACGACTCTCACG
GTCCCGCGCGAGGCGCTGCCGCCGCTGGAAGAGGGCGAATACTATTTCGCCGACCTGATCGGCCTTGATGCGGTCACCGA
TGCGGGCAAGCGCGTTGGTAAAGTAATCGACGTTCACAATTACGGCGCGACCGATATCGTCGAGATCGCAAAGGACCCCG
TGCCGGAGAAGGGCATGAAGACCTTCATGGTGCCAATGACGACGCACGCGGTGGTCGAATGGAATGGCGAGCGGATCGTG
ATCGCCACGGACTTTGCCCATCCCGATTGA

Upstream 100 bases:

>100_bases
TTACGTCGCCAAGCCTTCGTATCCTTCTCCCACTTGAAGAAGGATAGCGCAGCTTACGCGCGCAGCGCGGTAGCGAAGCT
TGGATGAGGGTGACTCGCCA

Downstream 100 bases:

>100_bases
TGGAACAATCGGCGGTGTTCGTGCGCTAAAAAAGCATGAGACAATTGCCAAAACGATCAATCATCCTTCTCGCCTTCACC
GCAGCGGCCAGCGTGGCCTG

Product: 16S rRNA processing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 168

Protein sequence:

>169_residues
MTDNTPLTLAAITGAHGVRGDVRLKLLGEGLEALKAHSSFNEGTLTLKSVRSDNKGGAIARFAEVQGREQAEKLRGTTLT
VPREALPPLEEGEYYFADLIGLDAVTDAGKRVGKVIDVHNYGATDIVEIAKDPVPEKGMKTFMVPMTTHAVVEWNGERIV
IATDFAHPD

Sequences:

>Translated_169_residues
MTDNTPLTLAAITGAHGVRGDVRLKLLGEGLEALKAHSSFNEGTLTLKSVRSDNKGGAIARFAEVQGREQAEKLRGTTLT
VPREALPPLEEGEYYFADLIGLDAVTDAGKRVGKVIDVHNYGATDIVEIAKDPVPEKGMKTFMVPMTTHAVVEWNGERIV
IATDFAHPD
>Mature_168_residues
TDNTPLTLAAITGAHGVRGDVRLKLLGEGLEALKAHSSFNEGTLTLKSVRSDNKGGAIARFAEVQGREQAEKLRGTTLTV
PREALPPLEEGEYYFADLIGLDAVTDAGKRVGKVIDVHNYGATDIVEIAKDPVPEKGMKTFMVPMTTHAVVEWNGERIVI
ATDFAHPD

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=154, Percent_Identity=27.9220779220779, Blast_Score=69, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_ERYLH (Q2N9Q5)

Other databases:

- EMBL:   CP000157
- RefSeq:   YP_458383.1
- ProteinModelPortal:   Q2N9Q5
- STRING:   Q2N9Q5
- GeneID:   3869564
- GenomeReviews:   CP000157_GR
- KEGG:   eli:ELI_07470
- NMPDR:   fig|314225.3.peg.1550
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   HQDLLVV
- PhylomeDB:   Q2N9Q5
- ProtClustDB:   CLSK835335
- BioCyc:   ELIT314225:ELI_07470-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 18209; Mature: 18078

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDNTPLTLAAITGAHGVRGDVRLKLLGEGLEALKAHSSFNEGTLTLKSVRSDNKGGAIA
CCCCCCEEEEEECCCCCCCCCEEEEEECCCHHHHHHHCCCCCCEEEEEEECCCCCCCCEE
RFAEVQGREQAEKLRGTTLTVPREALPPLEEGEYYFADLIGLDAVTDAGKRVGKVIDVHN
HHHHHCCHHHHHHHCCCEEECCHHHCCCCCCCCEEEEEHHCCHHHHHHHHHHCCEEEECC
YGATDIVEIAKDPVPEKGMKTFMVPMTTHAVVEWNGERIVIATDFAHPD
CCCHHHHHHHCCCCCCCCCEEEEEEEEEEEEEEECCCEEEEEECCCCCC
>Mature Secondary Structure 
TDNTPLTLAAITGAHGVRGDVRLKLLGEGLEALKAHSSFNEGTLTLKSVRSDNKGGAIA
CCCCCEEEEEECCCCCCCCCEEEEEECCCHHHHHHHCCCCCCEEEEEEECCCCCCCCEE
RFAEVQGREQAEKLRGTTLTVPREALPPLEEGEYYFADLIGLDAVTDAGKRVGKVIDVHN
HHHHHCCHHHHHHHCCCEEECCHHHCCCCCCCCEEEEEHHCCHHHHHHHHHHCCEEEECC
YGATDIVEIAKDPVPEKGMKTFMVPMTTHAVVEWNGERIVIATDFAHPD
CCCHHHHHHHCCCCCCCCCEEEEEEEEEEEEEEECCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA